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LotjaGi1g1v0478000.1

Overview

Field Value
Gene ID LotjaGi1g1v0478000
Transcript ID LotjaGi1g1v0478000.1
Lotus japonicus genome version Gifu v1.2
Description Cysteine synthase; TAIR: AT3G61440.1 cysteine synthase C1; Swiss-Prot: sp|Q1KLZ2|CAS1_MALDO L-3-cyanoalanine synthase 1, mitochondrial; TrEMBL-Plants: tr|I3S9T9|I3S9T9_LOTJA Cysteine synthase; Found in the gene: LotjaGi1g1v0478000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:98975281..98980241) extracted from Lotus japonicus Gifu genome v1.2.

CCCAGATGCATTAGGGAAAAAATAAAAATAAAATATATACATATGCAGCCAACAACTAGGCAACTACCAACTTCTGGTCT CAGACATTCAAAACTAAGACTAAATTGGACTCTTGCTTATAACAGCAGAGTCTATATAAGTGGGAAATAATAGCAACCCT TACTGTACTATAAACAGAGCCTTGAGATCTTATCACTTCATATCAATTCTCCATTAATGGCTTCCCTCAGTAGCTTCCTC AAGCAAAGGCCTTCTTCATATGCTGTTGCATGCCACCACACCCTGTTGAGGAGATTGTTCTCAACAGCAACCAGTGCTGA TTCCCCTTCTCTTGCTCAGAAAATCAGAGATTTGCCTAAGGATCTTCCTGGAAACAACATCAAAAAACATGTTTCTGAGG TATCTCTTTTCTCTGGCACTCTAACTTTTGTTACAAGCTGATGAGACAACATTCATGATTCAACTCTCCACTCATATCAT GCCATGTGTATGACAAAATTTTCACTCTTTCCAGCTCAATCTTTTCATCATCACTCAAATGGGAATTGAATTTTGGAACC AAATCTTGTTCTGTTTTTCCCCCCTTTGTCCTGGGGTTGGTTTGAAAAGCTGTTTTGAATTCTTAGCATAGATCTTGGAA TAATTACAAAATTGTGTTAGCAAAACCAAGATTAATGTCATGAAACTCAGTTGTTCTGTTTTGATTTCTTTGAATTGTTC TGCTATGTGATGACAAGAGCAGAAGAAAAAACAAAAAAAATTATCACCTTATGAAGTTCTTTATATTTTCTTTTTACTTC TCCATAGGAAAAAAAGAAACAAAACTTGAAGAAGAAACCATTTTGCAGAATAACTGACCTTTCCTTTGTAACCATTTTGT TTTATTGGAGCACACACTCTTGTTTCACTTATTCAATGCTTATCTGAAGTATAATATTCAATTTTTCAGCTTATTGGGAG GACTCCACTTGTTTATCTTAACAAAGTCACTGAAGGATGTGGAGCTTATATTGCTGTAAAGCAAGAGATGATGCAGCCCA CAGCCAGTGTCAAAGACAGGTACAGGCACAGCCCCTTTCTATTTCCAATTCAATAAGAATTTCTTTTAATTGTATCTACA TTAAATTTGATCAAGTTAACTTATATAATTTTCTTGAGTTTTTGCAGACCAGCACTTGCAATGATTGCTGATGCTGAGAA AAAGAATCTGATAACTCCTGGAAAGGTTTGTTTTGGCTTTTGATTTGATTTTGGATACCAATTCAGCTAATAGTGTGTTT GGATCAGTTTCTCTTTCATCAGAATTAATTCTGAAACCCATAAGCTACTCACAGAAGCTTCTACCCAGATTCTGGCTTCA AATTAAATTGTAGTTTTCAAACACAATTTTCAGATGTAGATGCTAATGTTGTGTACATAATTTTTTGGTGCAGACAATTT TGATAGAGCCCACATCTGGCAATATGGGTATCAGCATGGCTTTTATAGGTGCTTTGAAGGGATACAAGGTGGTTTTGACC ATGCCCTCATATACCAGCATGGAAAGAAGGGTGACCATGAGAGCATTTGGAGCTGAATTGATCCTCACTGACCCAGCTAA AGGAATGGGAGGCACAGTGAAGAAGGCTTATGACCTTCTGGAATCCACACCAAATGCTTTCATGCTGCAGCAATTTTCAA ACCCTGCCAACACTCAGGTTACCTGCCTAAATTCCTCTTTTTGTATTTGAAATACTTTACTGATAAAAAAATGTATAATA CTTTCTTTGTTCCTGTTGGAAAATCTCACATTGACTAGAGATATGGCCAAATAAGCGTTTATAAATGGTATAGAAAGCTT TACTCTAGATTTGTTTATCGGAAAACACCCATATATGGGCCACCTGCAAATGTTTTGTAAATTTCTCGCTCCAGATGTCT AGCCCTGGGCATGAGGTTTTGAGAAGTCTCACATCGACTAGATCAAATGAGTCTTATAATGGGTAGAGAAAACCTCATCT CTAAGCTAGCTTTTGATGTAGAGTTAGGCCTAACCCAAATTCTACAAGTTCTTATTCATAAGTCACTTTTAACTAATTCA CACAGATTGAGAATGTTATTTATCAGTCTCAAATTTATACAAGTTTATATTAATTTATGCTAGTGCTATACTTGTGTGTA ATGGTTGGTTGCTTTTAATTTTAATTGTAGATTCATTTCTAAAATCCTTGGCATTTGTCATTGTGAGTTTATATCTGACT TCAACATGGAAAACAGGTGCATTTTGAAACAACCGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTG TTATGGGAATAGGTAGTGGAGGCACAGTCTCTGGGGTTGGACAGTATCTTAAATCCAAAAACCCTAATGTTAAGGTGATG TTCTTCAGATCACAATTGAAATTACAAACTGTAACAGTGCCCTAGTGTTCTGTTAGATATCCTCATTAAATCCTTTGAAC TGTTTTCAATCATACCAGATATATGGAGTGGAGCCATCTGAAAGTAATGTGCTGAATGGTGGTAAACCTGGTAAGGATCA TTTATATTTCTTTGAATATCAGTTTACTTTTTTTGTATGGTAATTTTGTACATATTTTCTCCTTAAATGCTCCATTTCAG CTCCAAGCAACAATAGATTAAATCTAAAAGAAGTGGTGTAGAAGTCTCCAGAGTTTTTACATTTCATAGTCATTTCTTGC ATGGGTAAATTGATGAAATAATATAACGTATGTAAAAGGTCACTAAATATAAGAATCTGAAGTATTTAAAACAATTATTC TGGTCTGTGATATTCTGAAGCCCCTTCTCCTATATACAAATTGCAAACTCTGATGCTGTCCTTATATACAGGTCCTCATC ATATAACTGGCAATGGTGTTGGATTCAAACCAGACATATTGGACATGGATGTAATGGATAAAGTTCTTGAAGTAAGTACA TATTGTTAGATTCTTCTACTAGAAAATAGAAATTTGGTTTGAGAACCTTGGTCCTCATCATTTGTTGCAGTCAAAAAATG ATGTAGTCACTATAGTCATAAAATCTTGACCTTGGGATAAAGATTAGACGGTTCAGATTTCAAGTTCATGTTTTAATTCC AACTTTGTTGCAATTAAACATAGACCGTTTGATCTTCATTCAAAAATTCTGATCTACTGACTGCAGCGGCTGCACCCTAT TTTGACTGCAGCAAATCCAGAGTCGAATACCTTGTGTTTCTCCTAACTGTCATTGGAAACTTGTGTGTAGGTAAGCAGTG AAGATGCAGTTAAAATGGCTAGGATATTGGCCTTGAAGGAAGGACTCATGGTATTCTTCAAATGACAATTTTGTGGAAGT CTAAAAGCAAGAATGCATGAAGTTTTATTCATTTAACCATGGATTTCACCCTAAGATTTACATATGATTCTTAAATAACT GGCAATAGACTGTTTCTGAAATGCAAATTAAATTATGAAATTGTAAATATTTTTGTTCCAACTTTTCCAGGTTGGGATAT CTTCTGGAGCTAACACAGTTGCAGCACTCAGATTGGCTAGTCTGCCTGAGAACAAAGGCAAACTTATTGTGGTGAGAACA CTTTCCTTAAAACAACATCAAACTAATGGTGTAAGCCTAAATGATCATCACCCTCAGTAACTAATTCACACCAGGCATAA ACACTATGCAATCAATGGCACATTTTTTTCTGTAATATGGTTTTGGTCCCTGCATTTTTGGAAATTAGTCGCTCATTGTT TTTTTGTTTGACTTTAGTCCCTGTGTTTTCAAAATAGCCATGTTTCAATCCCTGAGATGACTAATAGTCTAATACCATAA GAGAGGCAATTTTTAGGATTGAAATTTACTAGAAAAATAGTCCTCGAAATTGTCTTTTTCTTTTGATATTGGTCTTCTAA GAGACTGAAATACGACTATTTCGAAAATATAGGAACCGGAGTCAAACAGAAAAACAAAGAGCGACTAAATCCAATAATTT CCAGTAATACAGACACCAAAAACACATCTAAACCTATTTTTATCATCATATGATTCGAAATTCGATTAAAAATGCTTAGA ACTATGATTTTAAAAATTGCTGGTGACTTATTTTCAGACTATTCATCCAAGTTTTGGGGAAAGATACCTGTCATCTGTCC TGTTCCAAGAGCTTCGTGATGAAGCTGAAAAAATGCAGCCAGTGTCAGTTGATTAATGCCCTCCATCAGGTCTCATAAAA CTAGAAAGTTTCGTTGTGGAGTTACAATCCTGTTGTAGCAAAAGTTGTCAACTTCAGCTTACAACTAGACTAAGACCCGT GCGCTGTTTGGGCGGACACAACTTAAATAATTGCAGAGTAGTCGTCTATGGTTTCAAATCGTTTCATCTTCCAAAATTTT TAGAAAGAGTTCAGCCACAATAACTAAGATTTTCTTACATTTTCGAAAACTGTCACTTTCATTTGTGAATTGTGATATTT ATGATGATAATAATCACTGTTAAGTGACTTTATTTTCTCTCAAAATGTCTACACTTGAATCGTCATTGTGTTATGTTCTC TACTATCCACTCCTCTACTTGTTGAAATGAAGGAGTTTTACAATGGAATCTAAAAAAGAAAAATGAGGTAGTTGTAGAGA AGCTATGAGTAGTTGTATCCAAACCAATTGCATCCACTTCAAGTTTTTTAGAGGAATGAAATCAACCACTAAAAACATGT TTTGCTGAAATTTTGAACAAACCTAAAAAAAAGTAAATATTAGGCTTAAATATGTTGGAGGTCCCTCTAAAATAGGGGTC TTTTGGTTAAGGCCCCTACAATTTTTTTTGGGTGGAATAAGCCCCTAATGTGAAAATAATATATAGTGATAAACCCCTGC CGTGAGGTTCCGTTTAATTTCTCATGATTCTGCAAACGACGCTGACGTGGATTATATTTTGTGAAAATTATTCAATTAAA G
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0478000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCCCTCAGTAGCTTCCTCAAGCAAAGGCCTTCTTCATATGCTGTTGCATGCCACCACACCCTGTTGAGGAGATT GTTCTCAACAGCAACCAGTGCTGATTCCCCTTCTCTTGCTCAGAAAATCAGAGATTTGCCTAAGGATCTTCCTGGAAACA ACATCAAAAAACATGTTTCTGAGCTTATTGGGAGGACTCCACTTGTTTATCTTAACAAAGTCACTGAAGGATGTGGAGCT TATATTGCTGTAAAGCAAGAGATGATGCAGCCCACAGCCAGTGTCAAAGACAGACCAGCACTTGCAATGATTGCTGATGC TGAGAAAAAGAATCTGATAACTCCTGGAAAGACAATTTTGATAGAGCCCACATCTGGCAATATGGGTATCAGCATGGCTT TTATAGGTGCTTTGAAGGGATACAAGGTGGTTTTGACCATGCCCTCATATACCAGCATGGAAAGAAGGGTGACCATGAGA GCATTTGGAGCTGAATTGATCCTCACTGACCCAGCTAAAGGAATGGGAGGCACAGTGAAGAAGGCTTATGACCTTCTGGA ATCCACACCAAATGCTTTCATGCTGCAGCAATTTTCAAACCCTGCCAACACTCAGGTGCATTTTGAAACAACCGGTCCTG AGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTTATGGGAATAGGTAGTGGAGGCACAGTCTCTGGGGTTGGA CAGTATCTTAAATCCAAAAACCCTAATGTTAAGATATATGGAGTGGAGCCATCTGAAAGTAATGTGCTGAATGGTGGTAA ACCTGGTCCTCATCATATAACTGGCAATGGTGTTGGATTCAAACCAGACATATTGGACATGGATGTAATGGATAAAGTTC TTGAAGTAAGCAGTGAAGATGCAGTTAAAATGGCTAGGATATTGGCCTTGAAGGAAGGACTCATGGTTGGGATATCTTCT GGAGCTAACACAGTTGCAGCACTCAGATTGGCTAGTCTGCCTGAGAACAAAGGCAAACTTATTGTGACTATTCATCCAAG TTTTGGGGAAAGATACCTGTCATCTGTCCTGTTCCAAGAGCTTCGTGATGAAGCTGAAAAAATGCAGCCAGTGTCAGTTG ATTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0478000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASLSSFLKQRPSSYAVACHHTLLRRLFSTATSADSPSLAQKIRDLPKDLPGNNIKKHVSELIGRTPLVYLNKVTEGCGA YIAVKQEMMQPTASVKDRPALAMIADAEKKNLITPGKTILIEPTSGNMGISMAFIGALKGYKVVLTMPSYTSMERRVTMR AFGAELILTDPAKGMGGTVKKAYDLLESTPNAFMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVG QYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDMDVMDKVLEVSSEDAVKMARILALKEGLMVGISS GANTVAALRLASLPENKGKLIVTIHPSFGERYLSSVLFQELRDEAEKMQPVSVD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10314
19 371 353 1.2E-218 –
PANTHER
PTHR10314:SF80
19 371 353 1.2E-218
IPR031111
SUPERFAMILY
SSF53686
55 361 307 1.7E-98
IPR036052
Pfam
PF00291
60 346 287 1.9E-67
IPR001926
TIGRFAM
TIGR01136
60 358 299 8.7E-123
IPR005856
TIGRFAM
TIGR01139
60 358 299 3.1E-125
IPR005859
Gene3D
G3DSA:3.40.50.1100
62 354 293 1.6E-117
IPR036052
CDD
cd01561
64 354 291 2.51607E-146 –
ProSitePatterns
PS00901
85 103 19 -
IPR001216
Gene3D
G3DSA:3.40.50.1100
90 197 108 1.6E-117
IPR036052

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004124
Molecular function Cysteine synthase activity Catalysis of the reaction: O3-acetyl-L-serine + hydrogen sulfide = L-cysteine + acetate.
Subterm of
GO:0005739
Cellular component Mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
Subterm of
GO:0006535
Biological process Cysteine biosynthetic process from serine The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine.
Subterm of
GO:0019499
Biological process Cyanide metabolic process The chemical reactions and pathways involving cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration, reacting with the ferric form of cytochrome aa3 and thus blocking the electron transport chain.
Subterm of
GO:0050017
Molecular function L-3-cyanoalanine synthase activity Catalysis of the reaction: L-cysteine + HCN = sulfide + L-3-cyanoalanine.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0478000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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