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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001216
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We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.026s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0160969.1
n.a. PREDICTED: cysteine synthase-like [Glycine max] gi|356557036|ref|XP_003546824.1| chr0 75651457 75653481 +
2 domain predictions
1 GO term
Lj1g3v0084900.1
n.a. cysteine synthase [Glycine max] gi|351727525|ref|NP_001235628.1| chr1 763200 772619 +
2 domain predictions
1 GO term
Lj1g3v2682510.1
n.a. Cysteine synthase [Medicago truncatula] gi|357507415|ref|XP_003623996.1| chr1 31191303 31195761 +
2 domain predictions
1 GO term
Lj1g3v3906730.1
n.a. cysteine synthase [Glycine max] gi|351727525|ref|NP_001235628.1| chr1 45569209 45574739 +
2 domain predictions
1 GO term
Lj1g3v4012900.1
n.a. Cysteine synthase [Medicago truncatula] gi|357508933|ref|XP_003624755.1| chr1 47527324 47532072 +
2 domain predictions
1 GO term
Lj1g3v4012900.2
n.a. Cysteine synthase [Medicago truncatula] gi|357508933|ref|XP_003624755.1| chr1 47527324 47532072 +
2 domain predictions
1 GO term
Lj1g3v4957650.1
n.a. PREDICTED: cysteine synthase-like [Glycine max] gi|356573072|ref|XP_003554689.1| chr1 60437752 60442482 -
2 domain predictions
1 GO term
Lj3g3v0948990.1
n.a. PREDICTED: cysteine synthase-like [Glycine max] gi|356557036|ref|XP_003546824.1| chr3 11879617 11883909 -
2 domain predictions
1 GO term
Lj3g3v0948990.2
n.a. PREDICTED: cysteine synthase-like [Glycine max] gi|356557036|ref|XP_003546824.1| chr3 11882437 11883909 -
2 domain predictions
1 GO term
Lj4g3v0510180.1
n.a. OAS-TL4 cysteine synthase [Glycine max] gi|351727959|ref|NP_001235131.1| chr4 8680234 8687409 +
2 domain predictions
1 GO term
Lj5g3v1425430.1
n.a. cysteine synthase [Glycine max] gi|351724467|ref|NP_001235267.1| chr5 21152304 21155179 +
2 domain predictions
1 GO term
LotjaGi1g1v0478000.1
n.a. Cysteine synthase; TAIR: AT3G61440.1 cysteine synthase C1; Swiss-Prot: sp|Q1KLZ2|CAS1_MALDO L-3-cyanoalanine synthase 1, mitochondrial; TrEMBL-Plants: tr|I3S9T9|I3S9T9_LOTJA Cysteine synthase; Found in the gene: LotjaGi1g1v0478000 LjG1.1_chr1 98975281 98980241 +
2 domain predictions
1 GO term
LotjaGi1g1v0650300.1
n.a. Cysteine synthase; TAIR: AT3G03630.1 cysteine synthase 26; Swiss-Prot: sp|O22682|CYSK4_ARATH Probable S-sulfocysteine synthase, chloroplastic; TrEMBL-Plants: tr|A0A0B2RJ41|A0A0B2RJ41_GLYSO Cysteine synthase; Found in the gene: LotjaGi1g1v0650300 LjG1.1_chr1 120872946 120879069 +
2 domain predictions
1 GO term
LotjaGi1g1v0778700.1
n.a. Cysteine synthase; TAIR: AT4G14880.1 O-acetylserine (thiol) lyase (OAS-TL) isoform A1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|I3RZE0|I3RZE0_LOTJA Cysteine synthase; Found in the gene: LotjaGi1g1v0778700 LjG1.1_chr1 135064783 135070569 -
2 domain predictions
1 GO term
LotjaGi1g1v0778700.2
n.a. Cysteine synthase; TAIR: AT4G14880.1 O-acetylserine (thiol) lyase (OAS-TL) isoform A1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|I3RZE0|I3RZE0_LOTJA Cysteine synthase; Found in the gene: LotjaGi1g1v0778700 LjG1.1_chr1 135065849 135069749 -
2 domain predictions
1 GO term
LotjaGi1g1v0778700.3
n.a. Cysteine synthase; TAIR: AT4G14880.1 O-acetylserine (thiol) lyase (OAS-TL) isoform A1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|I3RZE0|I3RZE0_LOTJA Cysteine synthase; Found in the gene: LotjaGi1g1v0778700 LjG1.1_chr1 135065849 135069749 -
2 domain predictions
1 GO term
LotjaGi1g1v0778700.4
n.a. Cysteine synthase; TAIR: AT4G14880.1 O-acetylserine (thiol) lyase (OAS-TL) isoform A1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|I3RZE0|I3RZE0_LOTJA Cysteine synthase; Found in the gene: LotjaGi1g1v0778700 LjG1.1_chr1 135065849 135069749 -
2 domain predictions
1 GO term
LotjaGi2g1v0455300.1
n.a. Cysteine synthase; TAIR: AT4G14880.1 O-acetylserine (thiol) lyase (OAS-TL) isoform A1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|Q8W1A0|Q8W1A0_SOYBN Cysteine synthase; Found in the gene: LotjaGi2g1v0455300 LjG1.1_chr2 94837168 94847490 -
2 domain predictions
1 GO term
LotjaGi2g1v0455300.2
n.a. Cysteine synthase; TAIR: AT4G14880.1 O-acetylserine (thiol) lyase (OAS-TL) isoform A1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|A0A0L9TAD9|A0A0L9TAD9_PHAAN Cysteine synthase; Found in the gene: LotjaGi2g1v0455300 LjG1.1_chr2 94838209 94846987 -
2 domain predictions
1 GO term
LotjaGi2g1v0455300.3
n.a. Cysteine synthase; TAIR: AT4G14880.1 O-acetylserine (thiol) lyase (OAS-TL) isoform A1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|Q8W1A0|Q8W1A0_SOYBN Cysteine synthase; Found in the gene: LotjaGi2g1v0455300 LjG1.1_chr2 94838209 94846987 -
2 domain predictions
1 GO term
LotjaGi3g1v0133300.1
n.a. Cysteine synthase; TAIR: AT3G04940.1 cysteine synthase D1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|I1MJD2|I1MJD2_SOYBN Cysteine synthase; Found in the gene: LotjaGi3g1v0133300 LjG1.1_chr3 16885256 16891506 -
2 domain predictions
1 GO term
LotjaGi4g1v0067900.1
n.a. Cysteine synthase; TAIR: AT2G43750.1 O-acetylserine (thiol) lyase B; Swiss-Prot: sp|O81155|CYSKP_SOLTU Cysteine synthase, chloroplastic/chromoplastic; TrEMBL-Plants: tr|A5YT88|A5YT88_SOYBN Cysteine synthase; Found in the gene: LotjaGi4g1v0067900 LjG1.1_chr4 8515451 8523315 +
2 domain predictions
1 GO term
LotjaGi5g1v0215100_LC.1
n.a. Cysteine synthase; TAIR: AT3G04940.1 cysteine synthase D1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|I1NIU6|I1NIU6_SOYBN Cysteine synthase; Found in the gene: LotjaGi5g1v0215100_LC LjG1.1_chr5 52064692 52066655 +
2 domain predictions
1 GO term
LotjaGi5g1v0215200.2
n.a. Cysteine synthase; TAIR: AT3G04940.1 cysteine synthase D1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|I1LBI3|I1LBI3_SOYBN Cysteine synthase; Found in the gene: LotjaGi5g1v0215200 LjG1.1_chr5 52075890 52082876 +
2 domain predictions
1 GO term
LotjaGi5g1v0215200.3
n.a. Cysteine synthase; TAIR: AT3G04940.1 cysteine synthase D1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|I1LBI3|I1LBI3_SOYBN Cysteine synthase; Found in the gene: LotjaGi5g1v0215200 LjG1.1_chr5 52076761 52079287 +
2 domain predictions
1 GO term
LotjaGi6g1v0124300.1
n.a. Cysteine synthase; TAIR: AT1G55880.1 Pyridoxal-5'-phosphate-dependent enzyme family protein; Swiss-Prot: sp|P87131|CYSKL_SCHPO Cysteine synthase 2; TrEMBL-Plants: tr|I3SSP2|I3SSP2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0124300 LjG1.1_chr6 31716999 31729536 +
2 domain predictions
1 GO term