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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0478800 |
| Transcript ID | LotjaGi1g1v0478800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|K7LWN5|K7LWN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0478800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99075408..99081260) extracted from Lotus japonicus Gifu genome v1.2.
CACAAGGTAAAGGTTTTTTTTTATTTTTTTTATAAGCCTCACAAGGTATAGGTGAATAAGTGAATTTAGTCTGTTAACCA AGCATTTCTTTAATTTTTTCCCCAATATTCGGAAGCAAGCCAAGGAAACTTGGCAGCGTCTAGCCTGTCTGGCACATGAT GTGTAGGGGTGTGGTCCACTGGCTTTGCATGATTATACAATAAGTCCAATGACAAGCTCATATACACACACTTATCATAT TGCAAAGCAAAACTCTCCGACCGATCGAGTCCATTTGTTTACCTGGCCACTATCATGGCAAATCTGAATCATCAAGAAAC ATCCTCCGATGATTTCTTCTATGATGTTTTCCTGAGTTTTCGAGGTGAAGACGGCGACGGAAGGTTTACCGATCATCTCT TCACTGCTTTGCGACAAAAGGGAATCAACACTTTCAGACATGATAAGGAGCTCAAGTTTGGGGCGCCAGAATTAATCAGG CCTGACATTTTGAAAGCAATCCGAAATTCGAGGATGTTAATTGTTGTTCTTTCTCAAAACTATGCATCTTCCACTTGCTG TCTTGACGAACTTGCCGAGATCGTTGACTCTTATGACAAAAAAGGATCACAGGTTTTGATCATTTTTTATAAAGTGGAAC CTTCTGATGTGTGGGACCTAAAAAATACTTATGCAGATGCTATGGCTGAACATGAAATAAGCTTCGAGAAAGACTTGGAG AAGGTCAAAACATGGAGGACAGCTTTGTCTAGGGTACGCGAACTCTCAAGAGAATATTGCAGTGACACCAAGTAAGTTTC TTTTTCCCCTCACTTGGCAGAAACATATTTTTCATTACACTTTTGGCAGTAAGGTTCGCGGATATTGGATATTGAATTGG TTTTCAAAGGAAAAATCATCCAATCCAAATTCATTGGGTTTGTTATTTTATCATCTAATGAATTTTTCTATAGATTCATT TTCGATCCAATCTAATATGTAGCGGTTTGAATTTTTTTTAATTATACTATAAATCTTAAAAAAATTATAATATAGGATCT ATGCAATGATAAATAATTAATAGCATTAACATAGCCAATATTTTAAAAACTTATGATTATCTGTCCTTCTAGTTTGGAGT TCTGTGTGATTTCAATCCTTATAGTTTTTTCGAGCTAATTAAGACCTTGCATTTTTTAAAATAACTACGTTTCTTTTATC ACTTTTTATATGCAAAATATATTTAAATCTTCATTTTTTTATTCAAATATTTTAGGACATATAATGGATTAGACACATAA TATAAAATTAAAACTATAAACATAAAAAACTTAGTGAAAATTTATCATTATTTGTCCTCGAATAATAGCTCAAGTGATAA GAGTTTGATGACATATGGGTTATGAAGGAAAATGTCCAGAATCAATTCTTGGAGCTTGTAATTTATCTTTCCGATGTATA AAAAAACACAATTTAAAGAGTTCTATAATATATGAGAGATTAGGGTAAAAGAAATTAAGGGTTTGCAGTCCACTCTGAGT GTAAAACTGTTTTACATAGACATTTACTTGAATTCCATCAAATTAGAAAATATTTTTGAGTAAAATACACTCACCCCCCT CAAGGTTTGCAAGAATGACACTCCACCCCATTCTTTTTTTAAATCTACACTCCACCCCATTTTTTATAAAGACAAAATTT AGTGACGAAAACAAATTCGTCACTAATAAAAAATAATTACTAATTAGATAAAATTTAAATAAGTTTAATGCATATACACT ATCATACATTAATTTATGAAAATAATTTTACTGAATTAAATTTAAAAAAACAATTCACTCTGTCTGTTAAGTCCACGTCC CATCTGTCTCCAAATCATATTTCTCACCACAAACAGTCACCACCAAGCCTTTGCTCCCTTTAACACGACGGCCACTGTCC CAGAATGTGAAACCCCATGGCACCACCATGCATCAAAGTTTTGTTGTGACCTGAACCACAGAACGTGAATCGCACATTCC CAAAGCTACCTGTTCAACTACTTTTTGTGAACTTCCCCCCCTTTAAGTTGCGAGCGAACGCTCTGTTGGTTTAAGATGTC GTTGGATTTTGTTAAAAGCGGTGCTCCACCGCATCGTTGGGTTCTAATAACCTCCGATCCACTTCATATTTCTTAATTTT GTTTCTCTATTTTCTTCACCCATTTGTCTTGCTTTTTGGGTCTACAATCCAATTTTCAAAATTTGAGGTATAAAGAGATT ATTTTGATTAAAATTGAATTATTACCAAATATGAAAACACAAACATGTTTCCCTATGTTCGAGATATGGTTTGTAAACCG GTCGGGTGTGCTATTGCAGAATTTGCATTGTGAATTTATGGAGGAAGACCACGATTGAGAGAAGGAGGAGGACTGTGATG TTTTCATTTTTTAAATTTATTGGATTATTTTGAAAATATTTTTTGAAATTATTGATTAAAAATTTAAATAATAACTAATT ATTAATGAAGAATATTTTTCGTCACTAAATTTACATCTATATAAAATGGGGTGGGGTGTAGATTTTAGACAAGAATGGGG TGGAGTGTAATTCTAACAAACCTTGAGAGAGGTGAGTGTACTTTACTCAATATTTTTTTATTTTAATTAAATTTAAAAGT AGTTTTGAGTAAAGCACAACCCTTTATTTCTTACTTTAATTGTAACTTGTATAAAACTTGTTCCGTTCAATAATATTATG AAGGACTTTAAATTTCATCAATCCGAATATTGAACATAATAACGTCGAACGCATTATAAATCGGACACTACTAGAAAAAG GATTTTTCACATCAGGGTTTTCACATCAGTTGATTAAATACCTGATGTGAAAGGTAATGCGGTGACAATTTCGAAATTAC AGTGAACTTTCATAAGACTTTTCACATCAGTTCAGAATATGTCCGATGTAAAAAATAATTAGTAAATATGTTTTACATCG GTTGCTATAAAACCCGATGTGAAAGGTTAAAGCGGTGGCATTTTTGAAATTTTAATGAATTATTTTTCACATCAGGTATA ATACAACCGATGTGAAAAGTCCCTCATGAAGTACTTTTCACATCAGATATAATACAACCGATGTGAAAAGTCCTTCATGA AAATTAAACCCAAACACATCACAAACCTAGCATTCTCACACAGAAACCCAAAACAAACCCAAAACCCGATCGTAGCCTCA CCGCTCTCGCTGCATTCGCATCGTCGCCTCACCGCCACTACTCACCGCTCTCGCTGTCACCGGTCCTCGCTGCCGCCGCT CTCGCTGTCGCCGGTCCTCGCTGCCGCCGCTCTCACTGCCTTCGCTCTCACTGCCTTCAAGGACCTTGTTGTTAGCTTCG TTCAGCGGCGAGTTGTTAGCTTCGTTCAGGACCTTGTTGTTAGCTTCCTTCAAGGACCTTGTGAATTCGACACAACCCTT TCTTCCTCTCATTACGAAAACAAATATCTCGCGCTCTAAGCTTGAAACCTCACCAGATCGAACTCTATCTCTGGCGCGGC GTCTTCGGTTTCGGTTTCTGGAGCTCTGTTTGACACTCCAGGCCTCGACCTCTCTCTCCCTCCCTTCAAAGCCTTCGTCA AGCAGATCGTGCAAGCTTTTCTCGAAGAGAAGCAGCAACAGCTAGATGAAGAACAACAAGAACAACAAGGAGTTACCCAG GACAAGGAGTTCGATGACGATGGCGATCTCATCATCTGCAAGGTCTGTTTCATCTTCACACTCTGGTTATTTTTTGAAGC AATGGTTGCTTAGGTTGAAGAAATTTGATTGTTTTCCTGTTTGTTTTGGTGGGTTGTTTCAGCTTTCGGAGAAGAGGAAG GTGACGATTCAGGATTTCAGAGGGAAAACACTGGTCTCCATTAGGGAGTATTACAGAAAGGACGGCAAGGACCTACCTAC TTCAAAAGGTGCTTGTATTTTCAATTCTGCTCTTTGCATACCTAGAGGAAAAACAATTTTGGATTGTGGGTTTTCAATAT TTTCTTTCTTTGTTGAAATAAGGATATTTTGGGAGTTTATGTTATGTTTTAAACATGTTCTAATCCATGACTTACTATAA ACCCTCGCTGTTGGCATTGCAAACTCCCAGTTGAGAACTTCCTTTGTAGCTTGGCATGAAAATGTTTGTGCACATTTGAG AGTATCTACTATGTATCTAGGGTTGTATTCTTGTGTAACGTGAAGCATTTCCCCTATACTAGTGTGATCAATAATTTCTG CAATCTGCATTTGTATTGTCAAGTTCATGCTCACTGGCTGTCTTGCTCATATGTGATTCAATAGCAGGTCTTTTCACTAA GAAATACAGAAGCTTCTCTTTTTATACAGATCACGCCTCGAATGATTTTGCCACTAAGAAGGTCAAGGTAATATATTTGA AAGTTCCTGAATGTTTAAACGGTCACTCAATTTAGTCACTACAATCAACTTAAACTTCTGTAACTTGACTGATGTTTTAT ACGTTCAGGGACTTGCAACTTTGCAAGTATTTTCTTCTTCCAAAGACATACTTACTAGCGGCAAAATCTTTTAGGGAACA GATTGACCATTAACACAGTTTTCAATTTTTTGAGCTGTACTTCCTATACCTATAGTTTCTAGTTATCAAAATTCAATTAT CCTCATTGTGTTATTCATCCTGCAGTTATACACTGGTTCCGTCCTCTTTGTTTCTTGGGTTTTTTGCTTCTATAATGTTG GTTGGACAGGTACATACATGGAAACATGTCTAAGTTCTATATTTTCTTCAAATTGTCATTAGCCTCTTGTATCTTTACTA ATCTAAGTTTGGGCTTTCAGGGAATATATCTCACTTCCACTGCACGCAGTCATGCTAAAGATAACAACTTGCATGAAGGT GCACTAATTGGCGACTTCAATGGGGAATTCTGGAGTGTGCACTACTAGAAAAATGAATTTTGGCATCAAGATCCATAGCT TTCTACTTTTCGTTCACCCTAAACCCTATGTTCAACTCCTTTGATGATTTTCGTTAAGATTGGTATATGGGTCAGATAAC AATGTTCATTTTCAGTCATCTTAGTTTCTCATTTGCTTGTTTGTTTAACTGGTTAAGTGCTGACCATTTTTTATTTTTTA TTAACTTTGAACTGTGCATTTGTGTCAATAATGTGCTTTTTTTCAAGTAATTTAATTTTGCATTCGTTTGTTCGTTTAGT TGGGTAATTCAAGTCTGATTTTTCTTGTTGATTAATTGAACTATGGATTTTGTCATTGTGTGATTAGGTGAGGAAAGTGG ATATGCTTGATGGAGTTTCCATTGTGCGATCTGAGAAGGTGAAGGATGAGTTGGTTTTCGATGGAAATGACATTGAGCTT GTTTCTAGGTCATGTGCCCTTATCAATCAGGTACAGTTTTTTTTCATTCTATGGATACATGCTAATGCCTGACTTTGTTG TTGTCTAATTTTTGTCTTGCTTGGATTTTAATTTTGGTTATTTTGTTGTTTTTGTTACATAAATTCCATGTTAAGAACAA GGATATCAGGAAGTTTCTTGATGGTATTTATGTTAGTGAGAAGGGGACCGCATTAATAAAGAAGGTACTTTTTTATCACC CTTTAAGTTCATTGATGATTTCCGTAAAGATTGTAATATATGATAGATAGTAATATTCATTTTCAGTGATCTTAATTTCT AATTTGCTTGTTTGTTTAACTGCTCATTTTGAATTCCTTACTTTTTTCCTAGCTAGAGAATGATTTTTTGAAGAGAGATA AAAGTGGTGGTTATTTGAAAAGAGTTTAGCTATATTGATATTGATTCCTCTTCCACATCGGTGACTGTCTCTGGCCAGAT TATTTTATGAGGT
CDS sequence (LotjaGi1g1v0478800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAATCTGAATCATCAAGAAACATCCTCCGATGATTTCTTCTATGATGTTTTCCTGAGTTTTCGAGGTGAAGACGG CGACGGAAGGTTTACCGATCATCTCTTCACTGCTTTGCGACAAAAGGGAATCAACACTTTCAGACATGATAAGGAGCTCA AGTTTGGGGCGCCAGAATTAATCAGGCCTGACATTTTGAAAGCAATCCGAAATTCGAGGATGTTAATTGTTGTTCTTTCT CAAAACTATGCATCTTCCACTTGCTGTCTTGACGAACTTGCCGAGATCGTTGACTCTTATGACAAAAAAGGATCACAGGT TTTGATCATTTTTTATAAAGTGGAACCTTCTGATGTGTGGGACCTAAAAAATACTTATGCAGATGCTATGGCTGAACATG AAATAAGCTTCGAGAAAGACTTGGAGAAGGTCAAAACATGGAGGACAGCTTTGTCTAGGGTACGCGAACTCTCAAGAGAA TATTGCAGTGACACCAAGTAA
Protein sequence (LotjaGi1g1v0478800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANLNHQETSSDDFFYDVFLSFRGEDGDGRFTDHLFTALRQKGINTFRHDKELKFGAPELIRPDILKAIRNSRMLIVVLS QNYASSTCCLDELAEIVDSYDKKGSQVLIIFYKVEPSDVWDLKNTYADAMAEHEISFEKDLEKVKTWRTALSRVRELSRE YCSDTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 7 | 157 | 151 | 1.26E-36 | ||
| Gene3D | 10 | 166 | 157 | 1.3E-48 | ||
| PANTHER | 11 | 164 | 154 | 4.4E-60 | – | |
| PANTHER | 11 | 164 | 154 | 4.4E-60 | – | |
| ProSiteProfiles | 14 | 157 | 144 | 24.232 | ||
| SMART | 15 | 157 | 143 | 9.6E-28 | ||
| Pfam | 16 | 153 | 138 | 3.3E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0478800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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