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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0480000 |
| Transcript ID | LotjaGi1g1v0480000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0R0F3J1|A0A0R0F3J1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0480000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99216138..99220891) extracted from Lotus japonicus Gifu genome v1.2.
GGGACTTTCACTCTTTGTTTTTCTTATATTGATTAGTAAGTTCTGTTTATGGAAAACCTTCAAAACAGAAGGTAAGTAAA AAGAGCATGCCCTCATAAATTTGGGAAACAAATCATGTAAAACAGAGCTCCTATGCCAAGTTGCAACTATGATGATATGA GACTTGCACTCATGACTGAACTATCATTCTTTTGGTATTCTCCATTTCTATGCCTCTTAATGATAGTTACATCTTTTTTC TTTTTTTCACATAAAAAAGCAATCTCTTAGGACAAGAAGCTAATGTAGTTTATATTTTTTCAACTTTTAGGAACCAATAA ACCTATAGGCATCAACTGAACTTCCTCTATAAATACTAGGCACAGCTTCACTCTCCACATATACCAAAGACAAATTCCAA AGTTCTTTTTCTTAGGATGGAGCTTTTGCAGAAAACTCACTTGAGAGTACAAGTGAGACCCTTTTTCCTCCTCTATTACT CTATCCCCTCTAACTAGTATTCTCATATTCTTCTCTTTTTATATGCACAACTTCAGTGTACATGCTTAAATAGATTCTTC AAGCAAGATTGTAAAGCTGCCTACACCTCATTTTCTTTTTTATTTTGCAGGTGCTTAGAATAGCTCTTGCTTTTCTTCTG GTGGCACTTCTGAGTTCAGAGAGAGGTGAGAGCAGAAAAGCAAAAATTGTGACCACTTCCTTTGAGTACAGTGCTATAAA CTGCAGAGCACACAGTGCTTCATTGACAGATTTTGGTGGTGTTGGTGATGGAAAGACATCAAACACAAAGGCATTTCAAT CTGCAGTCAGTCACCTGAGTCAGTATGCTTCTCAAGGTGGTTCTCAGCTCTATGTTCCTGCAGGAAAATGGCTCACTGGA AGTTTCAGCCTCACCAGTCACTTCACCCTCTATCTTGACAAAGAGGCTGTTCTCCTTGCTTCTCAGGTATCTCATTTAAT TTGTGCTCCATCTTTGACGACTAATTAACCAGAAAATGTTCATTCTGTGGTTTCTGAACAAATTTTGAAGTTTGATTCAA AATTCATCAATTTTGTGTTGAAAAATCTCACGTCAACTATATGGTCAAATAATACTTTATAAAGGGTAGAGTAATCTTCA CCCCTGGTTAGGATTGGAGCTTCCATCTGTTAGAATATGTTGTTTTAAGAACATTAAACTAAAATCTTTCACAATTTTAC CACTTACTTTCATTACTATCCTTACTTTGAATTTCTAAGTTGTATTATTGCTCCAAAGCCTTTCAAAGTAGAGCCAAAAT CTGTTCCTGATTCTACTGATTGAGCTAGTGTTGTTGTATCCCCTCACTTGGCCTCATGTGCCCATTCTTGCACCTTTGCT TTTGGCAGTATATGGCTAGAACAGTTTCCCAATGACAAAACAAACCAGCCAATGAAATATTTTAAGAGTTGCTCTATGAT TAGCATGTTTACATCTGTTTATTTTTTCACAAAATCAATTCTAGCACCCAGAAGCTACTCACAGAAGTTTCTCTCTAGAA TTGATTCGGCTTTAGAATCAATTGTAGTAGGATTTCCAAACAGTCTACTCAATTTCACAGCATATTAGAAAAAGACTAAG AGTTTCATTGGAAGAAAAATGAGATTTTTTTTTTTTAATTCATTACAGAATAACAGCCTCCTGATATTTGTCACTATGGC TATTATAGACTCATCACTCATGAATGAATATGGAAATTGCAATTTTCAAAGGGATTCACGTGAGTTACAAATGAAGGAAT ATGTCCAATCAATGAAATGCAAATGATGTGTCACAAGATTCCTCACTTTATACCAAGAGTATCTGAGTATGAGGGCAATA TTCTTAAATAATTCATGAAAGCATTGTTCAAACTCTATAACCTTTAACGTTGGCTGAGGTGGTACATGTTTGATTTCCTT TAAGCCAGGTTTTAGGTTCAAGTCTTATATATAAAAATAAAAACTCACTGTAAGAGTTAGCATCACGATAATGTGGATAT TTAATTCTCGAACAAGATTAACTCTAATGGAGTATATTCGTGTTAGATTAAGAAAAAGTCCTTAACCTTCAATCACCTCA AAAGCCACTTTGTCATGGCACTTTAGGTGTATTCCTAATTTCCTATATTCACATATGAACTTACCAGTTCCATAGTGTGG TCCATTACATTTTTGTCTTATGTTACCTTGGAGAACGGTTCTGACTTCTGAGTGTGTCACTTTTTTGGCACTTTCATGTG TGCTACTGCTAACTCTCTTTTTTTTTTATTGTATTAATAAAATGGTTTAGGATATCACTGAGTGGCCTGTGCTTGGACCC CTCCCATCTTACGGTAGAGGAAGAGATGCACCAGCAGGAAGGTACACCAGCCTCATATTTGGAACAAACCTCACTGATGT TATTGTCACAGGTATGGGGGAAAACAATAACTATTGAAGTATTAGTATCTTTTTTAGTTTAACATGAGTATCCTCTAAAA AGATAACCATGTTCGAGTCAGAAACATTCACATTCTGGTGGAGTTAGCATTAGTTAAGATTTACTTCAAGTCTTGTCTAT TCATAAGTTTCAGTTGGAAATACCAAAATTTACTTACTTCCATAGAATGTAATATTTGATGGAGTATATTATTGTTCACT ATATGAGGTTTAATGTTCAATTATGAGCCTTTTGTTAACAGGAGATAATGGCACCATTGATGGTCAGGGTGCGTTTTGGT GGCAACAATTTCACAGAAAAAAGTTGAAGTACACTCGGCCGTACCTGATTGAATTAATGTTCTCAGACAGCATTCAAATC TCAAATCTAACTCTCCTTAATTCCCCAAATTGGAATGTTCATCCTGTTTACAGCAGGTAATCCAACTTCACTTGTATTCA AGTCTTAAAAAAAAGGCACCCTTAAATTCTTCTAAGAACTTTCTGGAGAATCGTACCACAAAAGCTAGTTGCTGTAAATT GAAAGTCCAAAATTTTATAAACCCCACACAACAATCAGATACTTCCAATGTTAGACTCAAGTATCATACCTTGCAATTGA ATCCTAACAAATTCACATTTCATCTTGCATCATGAATTAACATCTCTAAATATTCATTTATTTTCAAGGTTATAACGAAA ATTTCAACTATATACAGCAATATTATTGTGAAAGGCATCACCATAATTGCTCCTGTGACGTCTCCAAACACAGATGGCAT CAACCCAGGTCAGTAATTGAAGTCATTTTTAAGATTCTTCAAATTTTGAATGATGTCATTAACTAACATGGACCATAAGA ATCAAAAGATTTTTTTAGCAAGCTAGTACTTAATACAAAGTAACACTAAGTGCATATTTGGAAATCCTTCTACAATTAAT TTCAAGGATCGAAATTGGTGAGAAGCTTCTATGAGTAGCTTCCGGAATTCAGATTTGATTCTGATGAGAGACAAATTGAT CCAAACATGCTATAAGTTTAGATTGGATTGATAAAATTTTTGCTATGCCATTCCTTCTACAATTGATTTTAAACACATTC AATTATGGTGAAAAGCTTCTATGAGTAGCTTCTGGATTTCAGAATTGATTCTGATGAAAGAGAAGTTGATCCAAATATGC TATATGTTTAGATTGAATTGATAATTAATATTTTTCTCTGCATCCTCTTTTTTTCATCATATCAGATTCCTGCACAAATG TAAAGATTGAAGACTGCTACATAGTTTCTGGAGATGACTGTGTAGCTATCAAGAGTGGATGGGATGAGTATGGCATAAAA TTTGGGTGGCCCACAACACAAGTAGTGATAAGAAGGCTTACATGCATCTCACCATTCAGTGCAACCATTGCCTTGGGGAG TGAGATGTCAGGAGGGATCCAAGACATCAGAGCAGAGGACATCACAGCCATCCAAACAGAATCAGGTGTCAGGATCAAAA CAGCAGTTGGAAGGGGAGGGTTTGTGAAGGACATATATGTGAAGAGAATGAACCTTCACACTATGAAATGGGCATTTAAG ATGACAGGTGATTACAACTCACATGCTGATACACACTTTGACCCTAATGCATTGCCTGAGATAAAAAACATCAACTTTAG GGATGTTGTGGCTGAGAATGTTACCATTGCTGCAAAGTTTGAAGGAATCTCCAATGACCCTTTTACAGAGATATGCATTG CTAATGTGACACTAGGGATGGCTGTTAAGGCCAAGAAAAGGCCATGGACTTGTGCTGATATTAAAGGGATCACGAGCGGG GTGACGCCTCCACCGTGTGACTTGTTGCCCGATCAGGGGCCAGAGAAAATCACAGCATGTGATTTCCCAGCAGAAAGTTT GCCTATTGACATGTTGGAGCTTAAGCAATGTGCTTACAGCATGAAATATGTTGGGATGTATTAGTTATTGATGTAGTTTA TGTTTATGTAGGAATAGGACAGCTCGATTTGGCACCCCAACCCTTAGATTTCACACCCTCAATTTTCGGATTTTCGGGTT CCGAATTATTTCGGAATCTTATATTCCGAAATTAATTCATGATTTGTAGTGCAAAATACATGTAACACCTCACTTTTGAG TGAAAAAATATTTCGGAAATCTTATTTCCGAAATATTTCGGAAACTAAGTTTCCAAAAGTGGGGTGACATTTCTAATGAG TGGGGTGTCAAATCTAACTCTCTAGGAATAGTCTTTCTCATGTATTAGTATTTCTCAAGTTTAGAAATGAATGATGTTTC AAATTATAGTAATTCACTTTTCTTCTGATGGCTG
CDS sequence (LotjaGi1g1v0480000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTTTGCAGAAAACTCACTTGAGAGTACAAGTGCTTAGAATAGCTCTTGCTTTTCTTCTGGTGGCACTTCTGAG TTCAGAGAGAGGTGAGAGCAGAAAAGCAAAAATTGTGACCACTTCCTTTGAGTACAGTGCTATAAACTGCAGAGCACACA GTGCTTCATTGACAGATTTTGGTGGTGTTGGTGATGGAAAGACATCAAACACAAAGGCATTTCAATCTGCAGTCAGTCAC CTGAGTCAGTATGCTTCTCAAGGTGGTTCTCAGCTCTATGTTCCTGCAGGAAAATGGCTCACTGGAAGTTTCAGCCTCAC CAGTCACTTCACCCTCTATCTTGACAAAGAGGCTGTTCTCCTTGCTTCTCAGGATATCACTGAGTGGCCTGTGCTTGGAC CCCTCCCATCTTACGGTAGAGGAAGAGATGCACCAGCAGGAAGGTACACCAGCCTCATATTTGGAACAAACCTCACTGAT GTTATTGTCACAGGAGATAATGGCACCATTGATGGTCAGGGTGCGTTTTGGTGGCAACAATTTCACAGAAAAAAGTTGAA GTACACTCGGCCGTACCTGATTGAATTAATGTTCTCAGACAGCATTCAAATCTCAAATCTAACTCTCCTTAATTCCCCAA ATTGGAATGTTCATCCTGTTTACAGCAGCAATATTATTGTGAAAGGCATCACCATAATTGCTCCTGTGACGTCTCCAAAC ACAGATGGCATCAACCCAGATTCCTGCACAAATGTAAAGATTGAAGACTGCTACATAGTTTCTGGAGATGACTGTGTAGC TATCAAGAGTGGATGGGATGAGTATGGCATAAAATTTGGGTGGCCCACAACACAAGTAGTGATAAGAAGGCTTACATGCA TCTCACCATTCAGTGCAACCATTGCCTTGGGGAGTGAGATGTCAGGAGGGATCCAAGACATCAGAGCAGAGGACATCACA GCCATCCAAACAGAATCAGGTGTCAGGATCAAAACAGCAGTTGGAAGGGGAGGGTTTGTGAAGGACATATATGTGAAGAG AATGAACCTTCACACTATGAAATGGGCATTTAAGATGACAGGTGATTACAACTCACATGCTGATACACACTTTGACCCTA ATGCATTGCCTGAGATAAAAAACATCAACTTTAGGGATGTTGTGGCTGAGAATGTTACCATTGCTGCAAAGTTTGAAGGA ATCTCCAATGACCCTTTTACAGAGATATGCATTGCTAATGTGACACTAGGGATGGCTGTTAAGGCCAAGAAAAGGCCATG GACTTGTGCTGATATTAAAGGGATCACGAGCGGGGTGACGCCTCCACCGTGTGACTTGTTGCCCGATCAGGGGCCAGAGA AAATCACAGCATGTGATTTCCCAGCAGAAAGTTTGCCTATTGACATGTTGGAGCTTAAGCAATGTGCTTACAGCATGAAA TATGTTGGGATGTATTAG
Protein sequence (LotjaGi1g1v0480000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELLQKTHLRVQVLRIALAFLLVALLSSERGESRKAKIVTTSFEYSAINCRAHSASLTDFGGVGDGKTSNTKAFQSAVSH LSQYASQGGSQLYVPAGKWLTGSFSLTSHFTLYLDKEAVLLASQDITEWPVLGPLPSYGRGRDAPAGRYTSLIFGTNLTD VIVTGDNGTIDGQGAFWWQQFHRKKLKYTRPYLIELMFSDSIQISNLTLLNSPNWNVHPVYSSNIIVKGITIIAPVTSPN TDGINPDSCTNVKIEDCYIVSGDDCVAIKSGWDEYGIKFGWPTTQVVIRRLTCISPFSATIALGSEMSGGIQDIRAEDIT AIQTESGVRIKTAVGRGGFVKDIYVKRMNLHTMKWAFKMTGDYNSHADTHFDPNALPEIKNINFRDVVAENVTIAAKFEG ISNDPFTEICIANVTLGMAVKAKKRPWTCADIKGITSGVTPPPCDLLPDQGPEKITACDFPAESLPIDMLELKQCAYSMK YVGMY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| PANTHER | 5 | 478 | 474 | 8.0E-298 | – | |
| PANTHER | 5 | 478 | 474 | 8.0E-298 | – | |
| Phobius | 16 | 26 | 11 | - | – | |
| Phobius | 27 | 31 | 5 | - | – | |
| Phobius | 32 | 485 | 454 | - | – | |
| Gene3D | 33 | 438 | 406 | 2.1E-109 | ||
| SUPERFAMILY | 45 | 467 | 423 | 2.43E-103 | ||
| Pfam | 91 | 433 | 343 | 1.0E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0480000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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