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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0480200 |
| Transcript ID | LotjaGi1g1v0480200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein BPS1, chloroplastic; TAIR: AT2G46080.1 BPS1-like protein; Swiss-Prot: sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic; TrEMBL-Plants: tr|G7L6L1|G7L6L1_MEDTR Plant/F1M20-13 protein; Found in the gene: LotjaGi1g1v0480200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99240263..99241324) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTCGTCCACAGGACCCACCCCGATCATTCTTCCCTTTTGGAAATCCTTTCAGGATGATAGCACCCAAAGGCACTAA GCTGTCTCCACAACTGCTGGAAGTAATATGTAATTTTGAGGCAAAATTGGAAGAGAGGATGAAAAAGCTTATTCCCAAAA GCAAGGATGAAATCCTCTGCTTGTCTTGGATGACTTCGGCCATGCAGGCACTTTGTGAGAGTCATAATGACATTAAAACC CTCATAGATAATCTTGAGCTTCCTGTGCATGATTGGGATGAGAAATGGATAGACGTGTACTTGGACATCAGTGTGAAATT GCTAGATGTATGCATTGCATTTAGTTCCGAGTTATCACGTCTAAACCAGGGTCAGCTTTTACTTCAGTGCGCATTGCATC ATTTAGACGAATCCTCTTCAAAGCAGTTTGTTCGGGCCAGTTCTTCACTTGATGGTTGGAGGCAGCATATTGGTTCTCAA AATCCTAGGATTGAGAAATGTGGCAATATTTTGGAGGATCTCAAGGGATCACTTGATCTTCTAAAGGTTAAAAAGTCAGC CAAAGGGAAGGTTTTGATGCAGGCTATTTATGGAGTAAAGGCGCTGACAGTATTTGTTTGCAGTGTGTTTGCTGCGGTTT TTTCAGGTTCTACAAAGAATTTGCTTGACTTGGATGTGGCTGACATGCATTCTTGGGCTCCAGCTTTTAAAAGTTTGCAG AATGTTGTAAATGAGGAAATTAGAGTTAGATTTTCAAGTGGGAGATTAATGGTCTTGAGCGAGCTGGAAGCGGTTGATTC CTCTGTGAAGGAATTATATCCTACTATTCAAGGTGTTGATGTAGATACCATTGAGTCAGAATCACTTGTCAAAATTGTTG AGAAGTTTGGCAGAGAAACAGAGAAGCTCTCACAAGGATTAGATCTTCTTGCAAAGGAAGTGGATGGCTTTTTCCAAGTA GTCTTGTCTGGTCGTGATGCTTTGCTATCTAATCTGAGGTCAGGTGCAACCTTCAATGACAGCATCTTGGGGGGTAACAG AGATGCACAAGCAGTCAATTGA
CDS sequence (LotjaGi1g1v0480200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCGTCCACAGGACCCACCCCGATCATTCTTCCCTTTTGGAAATCCTTTCAGGATGATAGCACCCAAAGGCACTAA GCTGTCTCCACAACTGCTGGAAGTAATATGTAATTTTGAGGCAAAATTGGAAGAGAGGATGAAAAAGCTTATTCCCAAAA GCAAGGATGAAATCCTCTGCTTGTCTTGGATGACTTCGGCCATGCAGGCACTTTGTGAGAGTCATAATGACATTAAAACC CTCATAGATAATCTTGAGCTTCCTGTGCATGATTGGGATGAGAAATGGATAGACGTGTACTTGGACATCAGTGTGAAATT GCTAGATGTATGCATTGCATTTAGTTCCGAGTTATCACGTCTAAACCAGGGTCAGCTTTTACTTCAGTGCGCATTGCATC ATTTAGACGAATCCTCTTCAAAGCAGTTTGTTCGGGCCAGTTCTTCACTTGATGGTTGGAGGCAGCATATTGGTTCTCAA AATCCTAGGATTGAGAAATGTGGCAATATTTTGGAGGATCTCAAGGGATCACTTGATCTTCTAAAGGTTAAAAAGTCAGC CAAAGGGAAGGTTTTGATGCAGGCTATTTATGGAGTAAAGGCGCTGACAGTATTTGTTTGCAGTGTGTTTGCTGCGGTTT TTTCAGGTTCTACAAAGAATTTGCTTGACTTGGATGTGGCTGACATGCATTCTTGGGCTCCAGCTTTTAAAAGTTTGCAG AATGTTGTAAATGAGGAAATTAGAGTTAGATTTTCAAGTGGGAGATTAATGGTCTTGAGCGAGCTGGAAGCGGTTGATTC CTCTGTGAAGGAATTATATCCTACTATTCAAGGTGTTGATGTAGATACCATTGAGTCAGAATCACTTGTCAAAATTGTTG AGAAGTTTGGCAGAGAAACAGAGAAGCTCTCACAAGGATTAGATCTTCTTGCAAAGGAAGTGGATGGCTTTTTCCAAGTA GTCTTGTCTGGTCGTGATGCTTTGCTATCTAATCTGAGGTCAGGTGCAACCTTCAATGACAGCATCTTGGGGGGTAACAG AGATGCACAAGCAGTCAATTGA
Protein sequence (LotjaGi1g1v0480200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRPQDPPRSFFPFGNPFRMIAPKGTKLSPQLLEVICNFEAKLEERMKKLIPKSKDEILCLSWMTSAMQALCESHNDIKT LIDNLELPVHDWDEKWIDVYLDISVKLLDVCIAFSSELSRLNQGQLLLQCALHHLDESSSKQFVRASSSLDGWRQHIGSQ NPRIEKCGNILEDLKGSLDLLKVKKSAKGKVLMQAIYGVKALTVFVCSVFAAVFSGSTKNLLDLDVADMHSWAPAFKSLQ NVVNEEIRVRFSSGRLMVLSELEAVDSSVKELYPTIQGVDVDTIESESLVKIVEKFGRETEKLSQGLDLLAKEVDGFFQV VLSGRDALLSNLRSGATFNDSILGGNRDAQAVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 190 | 190 | - | – | |
| PANTHER | 4 | 345 | 342 | 2.0E-163 | – | |
| PANTHER | 4 | 345 | 342 | 2.0E-163 | – | |
| Pfam | 89 | 306 | 218 | 1.5E-6 | ||
| Phobius | 191 | 214 | 24 | - | – | |
| Phobius | 215 | 353 | 139 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0480200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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