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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0484700 |
| Transcript ID | LotjaGi1g1v0484700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ROP-interactive CRIB motif protein; TAIR: AT5G16490.1 ROP-interactive CRIB motif-containing protein 4; Swiss-Prot: sp|Q9FFD5|RIC4_ARATH CRIB domain-containing protein RIC4; TrEMBL-Plants: tr|Q2HW10|Q2HW10_MEDTR ROP-interactive CRIB motif protein; Found in the gene: LotjaGi1g1v0484700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99812715..99815741) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAGGCTTATTGTAGAAGAGAGGTAAGTGAAGGAAATGGATAGCACTATGAAGGAGAAAATAATGATTTGATCTAATC TTACGTTCGTAGGTTTTAGTTTCACTTTAGTCACTCACTACTCAACCAACAACTTTTTCAAGGTGATGTTCGTTAAGACA CATCAAGTGAATTGATCGATCAATTTGATAGTGTTATTATCATACAAATCCAAACATGCATCATACTCTAATGTTGCGTA TGGGTATGTCCCTCTCACTTACCAAATGAGTTTATTAATCATATGTAGCTTGACTTTGTATACGTAATGATAACATATAT GCTTCAAAGAAAATGAAGTTAAGGGAAAGGAAGTACCCATGTGAGTGTCTTATATTATATTATAACAACAAGAACAACGC TAGCTATATATTCTAGTTGTGAAAACTTAGCTCAAGGTTCCATTATTTTTGCTAGTTCAAGTTCCAATTCCAAATTGATA TTCACCCCTTAGCAAGAATGAGACAAAGAATGGAAAGGCTTGTCATTCTTCCTTTCTCTGCTGGTTGCATCTCTGAGGCC AGTGTTGCTGTAGGTGTTCCCCAGCCAAGAAGATCAAAATCAGACACCAACACACAACAAGATTCAATAAGTCTCTCCCT CTCTTTATTTGCTATCAAACAATTACATGCTATTGTATAGTTCTTAAACTAATGTCTAGTATAAGAGAAGAGTATAATTT TCATAGCGTAAAACTTCTTTATATTCAATCATTTTGTGCCACATAAGAGTGTATATTTCATGAGCAATTATTCTTTTTTA AGTTTTAATTAAATTAAATGTTTATATTCTAATATGATGACAAATTATTGGTTGCCCATGTATAAATAAATTTACATTAA CAGTGCAGACACTTTGCATTATACCTTATTTCTTCCTTTGTTTTTCATTTTCTGCATTTGATATCATTTTCTTTCTAATA TATTTTGTTTTATATGCATGCTACATTATGATATATTCAAATTGCTTTGTTTAATATATGGTCTCTTACTAATTATTTGT TATGATAAGTATAGAAGGATCTAAAGGCGTTGAGGATTCAGAGACTTTGTCCGGTGAAAGCATGAAAAACTCGTTGAGGT TCCTTGACGTTGTTCCAAAGCCTAACCTTTCCACCGGTTTCAATAGGCTGTTCAAGGGTTTCAAGAACTTTTCTCAATTG TTTGGTGAGTATTTTGCTGGTATTTTACATGGAGCCATTCTTACATGAATATAGTATCTACAGGTATAAATACAACTTGA TAAAAGCTTAAGAAACATTAAAATTTTATAAAGCTTTATAACTCAATGATTAAATTGTTTACGCTTAGAGCCCGTCTGGA TACTACTTAGAAAGTATGAAAATGGGAAAATAAATACATCCCGAAACACTTTTTTGTTCACAATTTTAGTCCTCATACAT CATTTTTCACATTTATGTTTCTCATATTTTATGAATTTTAATGATTTTGTAACTTTGAACTCCTATTTTTCTTTTTGCAA TTTTAGTCCCTCAAGCTTGGCGATTCCTCGATGTGGCCCCTCTATTTTATTAAGTGTGTAGATGTAGTCTCATCACTAAC TCTCCATCCAATACAAAAAGAAGAAAAGGAACCAAAATTAAGAAATCGCTAAACTAGAGAGATAGAATCATTAAAAATAA AGTGAAGGGAGCAAAATTGCTGAATCAGTAAAACATGGTGACTGCAAATGTGAAAAATAAAGTAAATGGACTAAAATTAC TACATACTAAACTACAAAGACCAAAAGTTGATTAACTATACCTATAATATTAAACTTATGTAGTAATTATTCTTCTACAC AATAACATGTTCCAATCTAAAAAATTGACCACAACATTCTAGCACAATTGTTAGATACTTGAAATCTTTTAAGCATGTTG TGAAGGGTTCAAACTTTGGCCTTGTATATGCTAAAGAAACCTTGGTACACACTGAAAAAAATGTAAAAAAGTGGGAGGAT AAATTTGGCTTTTCACGTTTAGAAAAGTGATTTCAGGAGAAGCTAGTAAGGGTTGCTACTAGCTTTTGTACGAGGATAAA TGATTCTAACAATATTGAATGGGGATCTAAATATACTCTATAATCTTCATTGTCATGCATGTGCAACATAAAAATGGACA TATACCCTTGATTTTATGCTCTTTTAATTTGTATATGGATTTACTTTTGTTTGTTAACATGATATGATTGCAGTGGAGAA AGAAGAGGAGTTGGAAGAACTTGAAATGGACATAGAAATAGGGTGCCCAACAGATGTGCAACATGTGGCACACATTGGTT GGGATGGTATCACAGCTACTGCTGACCCCATCAGCAACAGGGGATGGAACTCTTTCCTTCCTCCTGAGCTGCTCTCTCTA TCATCTCAATCTTTAGGGCAGCAAGAGGTCTCTAATTTGGACTCAAAAGATGAAGCATCATCACTCCAGAAGCATCCTAA TTAATTGAAGTTTTCATTTTAATATTTGATGCAAGCATGATTTGGTTGTTGAGGATATATATATACATACATATATAAAT ATATTATGGTGAGTTGCATTTGTAATCATGCTCTTCATGATTAAGTTTCTATGTAAATGTATAATTACTCCATGATGATG AGCGTCTCTCAATTTGTAATTTATCTAGCTACTCTTTTAATCTCTCTAAGGTACTTTTTAAGCTAAGATTGGACTATTTT ATTGATACACACGTTGCAGAGAGAATAAGGCCATGTTTGTAGGTTGAATTTTGGAAGAGAGAAGGAAAATAGAAGGCTCA TGAGAAGTCCTCACATTGTTTGAGACCTTTTAAAGAGGAAGAAGGGTTTGAAGAATTCATGAAAACCTCCAAAAATCCTC CTTCAATTATTTTGTTGAGTTTCCCTAAATGTAGGGGGGTTGTAAAATTGAAACTAGGGGGAGGGCCCTTCCTCCTCCCC TACCCTAAAATCTCCTAAACAACCCCTCAAAGTGATATGCTATTTGTACTATTTCAACATGATTGCT
CDS sequence (LotjaGi1g1v0484700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACAAAGAATGGAAAGGCTTGTCATTCTTCCTTTCTCTGCTGGTTGCATCTCTGAGGCCAGTGTTGCTGTAGGTGT TCCCCAGCCAAGAAGATCAAAATCAGACACCAACACACAACAAGATTCAATAAAAGGATCTAAAGGCGTTGAGGATTCAG AGACTTTGTCCGGTGAAAGCATGAAAAACTCGTTGAGGTTCCTTGACGTTGTTCCAAAGCCTAACCTTTCCACCGGTTTC AATAGGCTGTTCAAGGGTTTCAAGAACTTTTCTCAATTGTTTGTGGAGAAAGAAGAGGAGTTGGAAGAACTTGAAATGGA CATAGAAATAGGGTGCCCAACAGATGTGCAACATGTGGCACACATTGGTTGGGATGGTATCACAGCTACTGCTGACCCCA TCAGCAACAGGGGATGGAACTCTTTCCTTCCTCCTGAGCTGCTCTCTCTATCATCTCAATCTTTAGGGCAGCAAGAGGTC TCTAATTTGGACTCAAAAGATGAAGCATCATCACTCCAGAAGCATCCTAATTAA
Protein sequence (LotjaGi1g1v0484700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRQRMERLVILPFSAGCISEASVAVGVPQPRRSKSDTNTQQDSIKGSKGVEDSETLSGESMKNSLRFLDVVPKPNLSTGF NRLFKGFKNFSQLFVEKEEELEELEMDIEIGCPTDVQHVAHIGWDGITATADPISNRGWNSFLPPELLSLSSQSLGQQEV SNLDSKDEASSLQKHPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 1 | 173 | 173 | 1.9E-68 | – | |
| PANTHER | 1 | 173 | 173 | 1.9E-68 | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 177 | 151 | - | – | |
| MobiDBLite | 28 | 57 | 30 | - | – | |
| MobiDBLite | 31 | 46 | 16 | - | – | |
| Coils | 87 | 107 | 21 | - | – | |
| Gene3D | 107 | 168 | 62 | 1.5E-5 | ||
| CDD | 108 | 126 | 19 | 2.69511E-5 | – | |
| Pfam | 109 | 128 | 20 | 3.0E-6 | ||
| ProSiteProfiles | 110 | 123 | 14 | 8.431 | ||
| MobiDBLite | 154 | 177 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0484700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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