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LotjaGi1g1v0484800.1

Overview

Field Value
Gene ID LotjaGi1g1v0484800
Transcript ID LotjaGi1g1v0484800.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Photosystem I reaction center subunit XI; TAIR: AT4G12800.2 photosystem I subunit l; Swiss-Prot: sp|Q41385|PSAL_SPIOL Photosystem I reaction center subunit XI, chloroplastic; TrEMBL-Plants: tr|C6T1C8|C6T1C8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0484800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:99815850..99823403) extracted from Lotus japonicus Gifu genome v1.2.

ACCAAACCCAAAAGAGCCCATAAATATAAACCAAAATATCAAATATTTCAAGGTTGGGTTTTGGATAAGGGATAAGGTTT TGGTATGCATTTCAGCCAATGAGATTTGAGGAGCTTCAACAGCCACAACCTTGAACTTTGATTGAACCATGATGAAAGTA CTTAGCCACCACGGTCCCTCAATTGAGACACTGTGTGTAGTAGTAGCAACAACTCTTTGTGCTGTGTTGGAATTCACAAA ATTAAGGCCATGGCTGCTGCTTCTCCAATGGCTAGTCAGCTCAAGTCCACCTTCACTAGGCCTTCTCTGGTCACACCCAA GGGCCTCTCAGGCTCTTCTCCACTCCACCTATTGCCTTCTAGAAGACAATTCACCTTCACTGTCAAGGCCATTCAATCTG AGAAGGTAGGCCACTTCATCCATATGTGATATCTTCGCGGATCAGCTTATTTTTCCTCATAATCAATTCTGACACTCAGA ACCTACGCATATAAGTTTCTCTCCAAAATTTATTTTGGTTCTATAATAATTATATATATGCTATTAGTTATAACTAGGAA ATCATTTCTGCCATATCCCATTTGCTCATAGTATGTTTAAATGAACTTATTTTTGCTCGGAATCAATTTTGTACACAGAA GATATTCGCATAAGCTTCTCCATAATTGAGTTTAGTTCTAGAATATATAATTGTAGAAGGATTTTCAGATGTGCTATTAG TTATTACTAGCAAAGTTTTCATTATCTTCTAAACAATGTACTATGTATGAACAAAGTATGAATGACTGTTTTTTTTTTGT TGCCTCATGTTTTCCAACATGCTATGAATCATGGACCATTTTAATTATATGAAGAATGTCAACATAAATTCAGATTTACA ACTTCTGTTTGTTGTATTTTTTAATGATTTAAGCTCTCACATATATGACTCATATGAGTCTTAATTAACATTTTTAACAT CTATAATCTAGAAATGGTTTGAAAACACACACCTTATACCATTATGTAGAAATCTATTGCTTGGTTTTATTACAATGTTC AATAAGAAGCCTTTTTTTTTTGTCTTAGCGTCATTAGATTAAAGCCACTAGGACAGCCGAACAGCACTTACGTCATGCAG GATAAAGAGAAACCTATATAAGAAACTTAGTTTATATGTCAAGTCTGATTGAAGGATTTTATAGGATTTCTGTGGCTGTT TCTGTCTTAATATTTTGTTAGGTTGTGATTTTGTGAGCAAACATGCTATGTTTTGTAGAGTTTTATTCTGTAGCATTATG ATATTGCTTAGAATCCCTTACTGACTGGTGTTTTCTTGTTTTTGGCAGCCAACTTACCAAGTGATTCAGCCAATTAATGG TGACCCATTCATTGGAAGCCTTGAAACTCCAGTTACATCAAGCCCCTTGGTTGCATGGTACCTCTCTAACCTTCCAGCAT ACAGAACTGCTGTGAACCCACTCCTAAGAGGGGTTGAAGTGGGCTTGGCCCACGGGTTCCTGCTTGTGGGCCCATTCGTG AAGGCCGGGCCTCTGAGGAACACCGAATATGCAGGAAGTGCAGGCTCTCTTGCAGCTGCTGGACTTGTGGTGATCCTTAG CCTCTGCCTCACAATCTATGGAATTTCATCCTTCAATGAAGGGGATCCATCCACTGCACCTTCATTGACCTTGACCGGCC GCAAGAAGGTGCCTGATCAGCTCCAAACAGCAGATGGCTGGGCCAAATTCACTGGGGGGTTCTTCTTTGGAGGCATTTCT GGGGTTACTTGGGCTTACTTCCTCCTCTATGTCCTAGATCTTCCATACTACTTCAAGTGAACAGCTTAACTTTCTGTTTG TATTACTTATTCTCAATGAATGAACAAAGCATGGATTGTGCAATTGAGATGTATGTAAATGCTGTATTTTGTAACTCTCA CTTTGTAACAATGTTCAGTCTCCTCTCTGGTTTTGGGCTATCTATCTTTGAATAGAACTTTGGTTTGTTTTGGTAAGCAA CTTAAGTAAGTGCTCATAACAATAAGTGTTCGTCGTAGAAGCTGTTATTCGTAAGCTAATTTGATAAGCTTATTGAAATA AGTTCAAAATATGTTTTAGGTATGTATAAGCACTTATTCATAAACTATTTTGAGAACATTATGAAAATAAGTGATAAGAT TAAACCTCCTTTGATCCAAGTTTATCGCCGGAAAAAAAAGAATTTCAGGTCTGGAACCACCATGGGGGGTGGCGCAGCCA CTACTGTGGCCATGGAGACTGCTGAGCAGCCAAAACAGCAAGGAGAGAGGGGAAATACGAATTTGGCAGATGGATAGGGG CAGTTACCAGTCTGTAGTTATTAGGAGTTAGCAGTTATTATGTGTGTATGTCAGTTTGAATTCAAAATAGAAACTGCACT ATGCAGTTGTATAAATAATAGATGTAGCCTATTAGATGATCATCCAGGAAATTATAAGTTTGGTAGTATGGAGAGAACAA GCTCTCGAACTCCTGCTGTATTGTACTATTCCCAGTAGAGATTCTTCATCTCTGCAGTATCAATAATAATTATCCATTAT TCTATTCCCCTATCTTATCATTTTGGTATCAGAGCACCATCCAGGTGCTGTGGTACTTAAGTGGTTCACTTTATAAATGG GAAAAACTCGTTCTGAAGCCAGTCAAGATCCAATGGAGCGGATGCAAGAAATTATGGAAATGTTGCAGATTGATCGTCAA CAAGCACAGGCTGATCGTCAACAAGCACAGATTGACCGTCAACAAACTGATCAACGAATTCAACGTTTGGAAAATATGAT GAAGACGTTCATGCATCGGGACGACCTTGGCTCTCAAAGAGACAATCATGAACAGAGCATTAAGCGCCCAGGACAGGAAA AAGAGTCTAACTGTGATAACACTTCTGCACGTTGGCGGAAGTTGGAGGTTCCAGTTTTTGATGGTGTTGCTGATGCCTAT GGTTGGGTTCATAAGTTGGAAAGGTTCTTCCAAATTCGTGGAGTTCCAGAGGAGGGGAGATTGCAGGCGGTTCTGGTGGC ACTGGATGGAAAAGCTCTATCATGGTTTCAATGGTGGGAAGGTTGTCATCCTCACGCAGACTGGGACACTTTTAAGTTGG CAATTCTGAAGAGGTTCCAAGTTTCAAGTACTCTCAATCCCTTTGCTGCTTTACTAGCCCTTAAGCAAGAAGATTCGGTG GCGGAATTTGTGGAACAATTTGAGAAATTTGCCGGCATGTTGAAAGACATTGATGAAACACACTTAATGGATATCTTTGT GAATGGTTTGAAGGAGGACATAGGTGCAGAAATTAAACTTTATGAACCAACAACCTTATCCATCATGGTCCAAAAGGTTT TAATGATTGAGCAGAAAAATCTTGCAGTTAGTAAGGTTCATCCAAATTCCACTTCTGGTTCAAGGTTCAGTAATTCTTAT AAGTCTCCATCCATTTCTCGAACTGTCACAGTTGATACTACACAGAAGAGTGGAGGCAAAAGTTACACACCATCTTCATC TTATTCTGGTAGTGTCTCAGTGGATAAACCATTTCAAAGAAATCGACCGGGTAATTACCGTAGACTTTCTGATGCTGATT ACCAGGAGAAGATCCGGAAAGGAGAATGTTTTCGCTGTGATGAAAAATTTGGGCCTAACCATGTGTGCAAGAACAAACAA TTTCGAGTTATGCTGATGGAAGAGACTGGCGATTCTGAACCAGAAGATGATCCAGATTGTCACCCCGAAACGGAACCTGT CCCACATTTATCCCTGAATAGTATTGTTGGATTCACTTCCAGAAGGTCTTTCAAGGTTTGGGGAACTATTGAAGATCACA AAGTTGTGGTGTTAGTTGATTGTGGAGCAACTCATAATTTCATTTCCAAGGCGTTAGTACAGGAATTGCACTTGAAGGTT GAGGATACTCCATCTTATGTAGTTGAAGTAGGGGATGGTCATAAGATACCATGCAAGGGTGTTTGTAAGGACGTGTCTTT GCTGTTACACAATGTGCCGGTCAATCAGCAATTTTATTTGTTTGGCCTTGGCGGAGTGGACATTGTATTGGGCCTAGAAT GGTTAGCAAGTCTTGGTGACATTAGAGCTAACTTTGAACAGTTGACTTTGCGGTTTACTATGAATGGCCAGAAGTTATCA CTCCAAGGGGATCCTGAATTATGCAAGAAGGATGCTTCTTTAAATTCCCTACTCAAGGCTTTGCAACATGGTGAGGGATT TCTCATTGATTTTCAACAAATTCGAGCGGAAACAGATTGGAGGGCTAATGTTCCAGCAGATTTAGTTTCCATTCTCCACC AATTTCCTTCCATCTTTGAACCACCGGAAGGATTACCACCTCACCGTCGGCAAGATCATGCGATTCATCTCAAGGAAGGG GCGCAAATTCCTAACTTAAGACCTTATAGATATCCTCATTACCAGAAAAACGAAATTGAGAAATTGGTTGCTGAAATGTT AGATGCCGGCATTATTCGTCCATCTACAAGTCCCTTCTCCAGCCCCATAATTCTGGTTCGAAAGAAAGATGGTAGTTGGC GGTTTTGTGTTGATTACCGGGCCTTAAACAAGATCATCGTGCCAGACAAATTTCCAATTCCAGTCATTGATGAATTGTTG GATGAAATAGGAGGGGCACAGATCTTTTCAAAGCTGGATTTGCGTTCCGGTTATCACCAAATCAGAATGAAGGAAGGTGA CATTGAAAAAACTGCATTCAGAACTCATGAAGGTCATTACGAATTTCTGGTACTTCCTTTTGGTCTCACTAATGCACCCT CTTCTTTCCAATCTTTAATGAATGAAGTTTTGAGGCCCCTTCTCCGCAAGTTTGTATTAGTTTTCTTCGATGATATTTTG ATATATAGCCTCTCCATGGAAGATCATATCCAACATTTGCACACTGTTTTATCTCTACTACAACAACATGATTTGAAAGT CAATGGGAAGAAATGCACTTTTGGCCAAGAGACTTTGGAGTATTTGGGTCACATCATTTCTGCAGGTGGAGTTTCTGCTG ATCCAAAGAAATTAGAGGCTATGTGGTTGTGGCCTACTCCCAAGGACATCAAAAGTTTAAGGGGTTTTCTTGGGCTAACA GGTTATTACCACCGTTTTGTACAGAATTATGGGAAGATTGCGAAACCTTTGACTAATTTATTGAAGAAAGATGCCTTTCA ATGGAGTTCTGATGCTCATGCTGCTTTTGAACAATTAAAGAATGCCATGACTACTCTTCCTATGCTGGCTGTTCCTGATT TTACCAAGCCTTTTGTTTTAGAGACTGACGCTTCAGGTACAGGTTTGGGTGCTGTTTTATTGCAGGAAGGTCGCCCTTTG GATTTTTGGAGTACAACTTTATCTGATCGGAATCAAAGGAAATCAGTCTATGATCGCGAACTGATGGCGGTTGTCAAAGC TGTCCAGAAATGGCGCCATTACTTGTTGGGTCATCATTTTATAATCCGAACTGATCAGAAAAGTTTGAAGTTTTTGGCAG ATCAACGCATGTTGGGTGAAGAACAATTCAAGTGGGTTTCTAAGTTGGCTGGGTTTGACTTTGATATTCAGTACAAACCG GGTAAAGACAATTCTGCTGCTGATGCCTTATCCCGGCGGAGTTCTTATTGCGCCATTTCTATCTTACAAATTCATGATTT TGAAGAATGGGTGGAAGAAGTCAATAAAGATGACAAGTTGCAGAAAATTATACAAGACTTGATTCTGGACCCTACTTCTC ATTCCGGATATGTCTTGCGTGATCAGAAACTATTCTTTAAAGGTAGATTGGTTTTATCAAAGACTTCCTCCCGTATACCA GTCATCTTGAAAGAGTTTCATTCTTCATTGATGGGAGGGCATTCCGGAATCTTCAGAACATACAAAAGGGTGGCCAACTT GGTTTATTGGGACGGCATGAAATCTGACATCAAGAACTATGTGGCTGCTTGCGATGTTTGCCAAAGGAACAAAAGTGATA CTTTAACTCCGGCTGGCTTATTGCAACCTTTACCCGTTCCTACTCAAGTTTGGACAGATATTTCCATGGATTTTGTCACT GGTTTACCTAAATCCATGGGGAAAGACACCATTCTGGTAGTAGTTGATCGTCTTACAAAATATGCACATTTCTTGGCCTT GGGTCATCCCTATACAGCTACTGAGGTTGCTGCAGTATTCCTTCAAGAAATTGTCAGGCTCCATGGTTTTCCTTCCTCCA TTGTATCTGATCGAGATCCCCTTTTCTTGAGCAATTTTTGGAAGGCACTTTTCCGAGCAGCAGGTACTCAATTGAAATTT AGTTCTGCTTATCATCCCCAAACTGATGGCCAAACCGAAGTTGTCAACCGGTGCTTGGAGGTGTACTTGCGCTGTCTTAC AGGTTCCAAACCCAAAAAATGGGTTTCTTGTCTTCCATGGGCTGAATTCTGGTTTAATACTAATTATAATGCTTCCAGCA AAATGTCACCTTTTCAAGCCTTGTATGGGCAGGATCCTCCTCTTCTTTTCAAAGGTTCGACCATTCCTTCCAAGTTAGAT GAGGTTAATAAACTTTCTAAGGACCGGGACGAATTGTTGGCAGATTTGCGAGACAACTTGCTTAAGTCTCAGGATATCAT GCGTACATATGCCAACAAACACAGAAGACAAGTGGAATTTGAAGCTGGCGATTGGGTCTTCTTGAAGTTGCAGCCTTATA GAAGGCGATCTTTGGCTCAACGAGTTAATCAGAAACTCAGTCCACGATTCTATGGGCCATTCCAAGTGCTAGCCAAAGTT GGAGCTGTAGCTTATAAATTGGACCTTCCTTCCCATAGCAGAATTCATCCGGTGTTCCATGTCTCTCTTCTTAAGAAAGC CATTGGCGATTCGTTTCAATCTCAGCCCTTGCCTCCCATGCTATCTGAAGATCACGAGTTGCAAGTTTATCCCGAATCGG TTCTCAATGTTCGTGAAGATTCTCCTGGTAATGTTGAGGTTCTGATTTCCTGGCAGAATCTTCCTTCTTGTGAGAATAGT TGGGAATCGGTGGCCCGCATTCATGAAGCCTTTCCAGACTTTCACCTTGAGGACAAGGTGAATCTTCAAGGGGGGGGGGG GGTATTGATAAGATTAAACCTCCTTTGATCCAAGTTTATCGCCGGAAAAAAAAGAATTTCAGGTCTGGAACCACCATGGG GGGTGGCGCAGCCACTACTGTGGCCATGGAGACTGCTGAGCAGCCAAAACAGCAAGGAGAGAGGGGAAATACGAATTTGG CATATGGATAGGGGCAGTTACCAGTCTGTAGTTATTAGGAGTTAGCAGTTATTATGTGTGTATGTCAGTTTGAATTCAAA ATAGAAACTGCACTATGCAGTTGTATAAATAATAGATGTAGCCTATTAGATGATCATCCAGGAAATTATAAGTTTGGTAG TATGGAGAGAACAGGCTCTCGAACTCCTGCTGTATTGTACTATTCCCTGTAGAGATTCTTCATCTCTACAGTATCAATAA TAATTATCCATTATTCTATTCCCCTATCTTATCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0484800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCTGCTTCTCCAATGGCTAGTCAGCTCAAGTCCACCTTCACTAGGCCTTCTCTGGTCACACCCAAGGGCCTCTC AGGCTCTTCTCCACTCCACCTATTGCCTTCTAGAAGACAATTCACCTTCACTGTCAAGGCCATTCAATCTGAGAAGCCAA CTTACCAAGTGATTCAGCCAATTAATGGTGACCCATTCATTGGAAGCCTTGAAACTCCAGTTACATCAAGCCCCTTGGTT GCATGGTACCTCTCTAACCTTCCAGCATACAGAACTGCTGTGAACCCACTCCTAAGAGGGGTTGAAGTGGGCTTGGCCCA CGGGTTCCTGCTTGTGGGCCCATTCGTGAAGGCCGGGCCTCTGAGGAACACCGAATATGCAGGAAGTGCAGGCTCTCTTG CAGCTGCTGGACTTGTGGTGATCCTTAGCCTCTGCCTCACAATCTATGGAATTTCATCCTTCAATGAAGGGGATCCATCC ACTGCACCTTCATTGACCTTGACCGGCCGCAAGAAGGTGCCTGATCAGCTCCAAACAGCAGATGGCTGGGCCAAATTCAC TGGGGGGTTCTTCTTTGGAGGCATTTCTGGGGTTACTTGGGCTTACTTCCTCCTCTATGTCCTAGATCTTCCATACTACT TCAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0484800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAASPMASQLKSTFTRPSLVTPKGLSGSSPLHLLPSRRQFTFTVKAIQSEKPTYQVIQPINGDPFIGSLETPVTSSPLV AWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGSAGSLAAAGLVVILSLCLTIYGISSFNEGDPS TAPSLTLTGRKKVPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 129 129 - –
PANTHER
PTHR34803:SF2
2 215 214 4.8E-118 –
PANTHER
PTHR34803
2 215 214 4.8E-118
IPR022980
Gene3D
G3DSA:1.20.1240.10
52 215 164 1.2E-76
IPR036592
Pfam
PF02605
57 209 153 5.4E-58
IPR003757
SUPERFAMILY
SSF81568
58 214 157 3.4E-55
IPR036592
TMHMM
TMhelix
129 151 23 - –
Phobius
TRANSMEMBRANE
130 151 22 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
152 189 38 - –
TMHMM
TMhelix
186 208 23 - –
Phobius
TRANSMEMBRANE
190 208 19 - –
Phobius
CYTOPLASMIC_DOMAIN
209 215 7 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009522
Cellular component Photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
Subterm of
GO:0009538
Cellular component Photosystem I reaction center A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin.
Subterm of
Part of
GO:0015979
Biological process Photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0484800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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