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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0486700 |
| Transcript ID | LotjaGi1g1v0486700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT3G07470.1 transmembrane protein, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9BZH6|WDR11_HUMAN WD repeat-containing protein 11; TrEMBL-Plants: tr|G7KRK5|G7KRK5_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi1g1v0486700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99983386..99986720) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGGAGAAGAAATAACTAAACTTCACTTCATTTTATTTATTTACTTACCATTTTTCTTTTTGGTAAATAAAGAAAGGG AAAGGAAAGAGAAACAGAAGAAGAAGAAGAAGAAGAAAGAGAAGAAGAAGAGAATTCCCAAAATTTTCAAAATCTTTGGG AATTCATCATCATCATCGATTCGCTTCAATGGCGGGTGGTAGGGTTTCCATTTTGTCATGGATTCTCTTTCTCGCTATCG CCACCGTGCCGTTGACGTCTTCGGCGGCCAATTCAACGACGATATACGAGGAGCTCAAAGCGCAGGGGCTACCGGTGGGG CTTCTTCCGAAGGGGATAACGAAGTATGAAATTAACGGAACCAGTGGTGAGTTCGTGGTGTGGATGGAGGAAGCGTGCAA CGCCAAGTTTGAGAACGAGGTGCACTACGATTCCAACATCAAGGGCACCCTCGGTTTCGGATGGATCAAGGGGTTGACCG GTATGACTGCTCAGGATCTCTTCCTGTGGTTTCCTGTGAAGGGGATTCGAGTTGATGTGCCGAGTTCTGGGATCATACAC TTCGATGTTGGTGTCGCTGATAAGCAATTCTCTTTGTCCCTCTTTGAAGATCCTCCTGATTGCAACCCCCAGGTTTTTTT CTTTTCTTTTCACCCATCCACAATTTTCTTGGTTTTTCCTCTTCTGGGTATCTGAAATTTGTGATTTTTTTTGCTGGGTA TGTGAAATTCATGATTTTGGTTATTTGGTATCTGAAATTTATGATTTTTTGTTGTTGGGTGTCTGATATTCATGAGCTTT GTTATCAGACTAACTGAAATTTATGATTTTATTGGGTATCTGAATTTTGTGATTTTTTTTGTTGGGCATCTGAAATTCTT GGTTTTGTTATTTGAATGCCTGAAGTTCATGATTTTGGGTACCTGAAGTTCATGACTTTTGTTGTTTGATTATCTGAAAT GTTTGAGTTTTTTATTGGTATTTGAAATTCATGATTTTTGTGATTTGGGTATCTGAAACTTGTGTTTTCTACCAGTTGGG TATTTGAAGTTCATGGTTTTTATCATTTGGGTATGCTCTTCTAATGAGTAGTCAAATTAATTTCCAAAACTATATAGCAT GTTATGTTTGTCGTGAATGATTGAAATTGCACATGTGCTGTTTGCATATGCATTCATGTGCTGTCAGCCCTTCAGATTGT ATTTCCTTGGTCAGAACAGTCTGTGATGAATTTGAAGGCTGAAGACTAATTTCACGTGACTAATAGTATTTTGATCACTT TCTCTTTCATTAACATCTATTCTGAAATCCAAAAGCTAATCACAGAGATTTCTCCCTAGAATCATTTCTGGCTTTAGAAT CAATTGTTGAAGGGTTTCCAAACATGCACTAAAATGATGCACAATCAAGGCATTAGGGCCTAACTTTTAGTATTTAGGAA CTGATTTGATAAACTTTCTATCTTTCATGACATGTTACTTGTCATTTTTCTTGTGTTGGGTAGCTGAAATTTGTTTTTTT TCCGGGTATATGAAAGTTATGATTAATTCGGTGTTTGACTTACTCAGGCTAATGTTGATGGTGATGGTGATGATGATGTG TTGAGGGCTGCTTGGTAGAAGAGAGAAGCATGTTGCTGCATTTCAGATTACATATCAATCAGCCTATCTGTGGCTGTGGT TGGTCTTGTTGTATTTTTTCTGTACAGTCACAGTCTTTTTCTTTTCTGCTTGGATTGAATCAATCGCCTGTGTCGAGGGA CAAAGGACGACAATTTTGGTGGTAGCAACACTCGTTTCTGCAAAACCTGTGTTAGAAAGAGAGGAATGTTGGTTGGTTTT GCTGATGATGATCTGTGTAATACTCAGGTTCTATTATCTGTGTTTTGGTCTTTTCATTTTTGTATGCAAGTTTTTCAACC TTGTGTTGTGTAGACCAAACTATTTTAATAAAATTCAGCATAGTATGTCCATGATTCTTGTATTATATTACTACTAGTTA TGATTCCCCTATTCCTGCCATTTATATTGTGAGTACTGTGTTGTGTGTGTTTTAATCACAATCTTTCAGGTAAGTTGTCC TTCTTGTCTGTATTTTTGCCTCCTAAATGGCTGTTTCAGTCCATGCTTTGATTGGGGACGTTTTCTCCAACTCTTTCTGT TTCTATACTCTGTTTTGATTGTTCCATAATGTATCGTTGGTATGGTTCTACACAGAATGAGATATTTGTGTAGAGTTAAA TGGAAATTCATTCTTAGTGTGTTTGGATACAAATTAAATTTAAAGTGAAGTACTCTTTTCACAATCCATATATAGAGTTC TGTTTTACCTGTTTTCTTGAAGCGGGTGCTAATGTTTGTTTGCTCCGGTGCCAACGAGTACTCAAACATTGTCTTTAGTA ATTGGCAAAATATCTAAGATTTTGAATGACAAAGGTCAAAATGATTTGGTTTTGTTCTTAAGATCCTTGGTATTCAGCAA TTACATTATATCACTGAGTCGAGTCAAATGACTGGATTCATGTTAAGTAGATAAAATCCCCTTAATGAGACCTAAAGGAA ACAAATTTCAATTAGGTTGGATGGATTTCAAGTGTATTTGAAAAACAGTTGGGTTTTAAGAACTTTTAGCCTCTATCTAA CAATTTCATAAAATGTGAATGAAAGCATTTTGATAGGGATAGAATTAGGGAGAGAGGGAAGAACAGAGAGAATAGAGAGG GAAACAAGGAAAAAGGAGTATCATTATCATTAACAACATACCAATTACATAGTGTATACTACCTTATATAGCTAACTAGA CTCCTAACCCAAATGCATGTGTAACATATCCCTCCCCTTAAAATTTTCCTTGTGCTCAAGGAAACTCATCAAAATCCAAA CACTAACAAGAACAAAATACAACCAAACCACATTAAAAACAAGAAAATGTAACACATAGAAACAGGGGCTCGAAGCAACA ATGAAATGAAAAAAAACTCCAAAAAAAACGAATGGGCCAACACAAGCTATGTCCACCCATTGCAGCACTTGGACTTTTTG TTTTTGTTCCTCCTGCAAGGCCCAAGTCCTTCCAAGAGCAGTTTGAGCCTGGCCCACTCGGAGGGGAGCACTGTTCATCC CTCTTCCTTCGCTTTGTCACTGTAGCAACCAAACACGCACACGCACACACACACCCCTCGTTGCTGAGCTATGGAATCAG TGGCCTCTGCCGCCGTGTCCGGTCCGACGCCGAAGTCCGGTGGCTTCGCTGGCGGCCTTGTCGCCATGACTGAGGTCCAA ACACAAGGTTCTCCGCCGCAAGGTGAGGAATCAGGCCGTTTTCGAGGTGGTTGGC
CDS sequence (LotjaGi1g1v0486700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGTGGTAGGGTTTCCATTTTGTCATGGATTCTCTTTCTCGCTATCGCCACCGTGCCGTTGACGTCTTCGGCGGC CAATTCAACGACGATATACGAGGAGCTCAAAGCGCAGGGGCTACCGGTGGGGCTTCTTCCGAAGGGGATAACGAAGTATG AAATTAACGGAACCAGTGGTGAGTTCGTGGTGTGGATGGAGGAAGCGTGCAACGCCAAGTTTGAGAACGAGGTGCACTAC GATTCCAACATCAAGGGCACCCTCGGTTTCGGATGGATCAAGGGGTTGACCGGTATGACTGCTCAGGATCTCTTCCTGTG GTTTCCTGTGAAGGGGATTCGAGTTGATGTGCCGAGTTCTGGGATCATACACTTCGATGTTGGTGTCGCTGATAAGCAAT TCTCTTTGTCCCTCTTTGAAGATCCTCCTGATTGCAACCCCCAGGCTAATGTTGATGGTGATGGTGATGATGATGTGTTG AGGGCTGCTTGGTAG
Protein sequence (LotjaGi1g1v0486700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGGRVSILSWILFLAIATVPLTSSAANSTTIYEELKAQGLPVGLLPKGITKYEINGTSGEFVVWMEEACNAKFENEVHY DSNIKGTLGFGWIKGLTGMTAQDLFLWFPVKGIRVDVPSSGIIHFDVGVADKQFSLSLFEDPPDCNPQANVDGDGDDDVL RAAW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| SUPERFAMILY | 7 | 147 | 141 | 2.22E-39 | ||
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 10 | 149 | 140 | 1.0E-71 | ||
| PANTHER | 10 | 149 | 140 | 1.0E-71 | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Gene3D | 20 | 141 | 122 | 1.1E-26 | ||
| Phobius | 26 | 164 | 139 | - | – | |
| Pfam | 32 | 140 | 109 | 5.1E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0486700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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