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LotjaGi1g1v0487600.1

Overview

Field Value
Gene ID LotjaGi1g1v0487600
Transcript ID LotjaGi1g1v0487600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Peptide chain release factor, putative; TAIR: AT5G36170.1 high chlorophyll fluorescent 109; Swiss-Prot: sp|Q9LVY0|PRFB1_ARATH Peptide chain release factor PrfB1, chloroplastic; TrEMBL-Plants: tr|G7KSD8|G7KSD8_MEDTR Peptide chain release factor 2; Found in the gene: LotjaGi1g1v0487600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:100046872..100052903) extracted from Lotus japonicus Gifu genome v1.2.

GTAACTTTAAGCATTTGGTTTATTTACATTTCAGCACTGCAGACATGAACCATTGAACCATATCCTAAACGAGTTGAGTT GAGTTGAGTTACTCACTCACTCACACAAACTCTCTCTTATCTCCTTTCTTTCACCTTCCAGCGAGCGAGGAAGTGGCGTT CCGTGGAACTCAGAAATTCGTTAGGAAAAGCCATGGAGGTTGTTACGCAGCCTCTGTGCACCACCACCACCGCCGCCATT GTAACCGCCAAAAGCTTCAGGCGTAAACAACCACTTCTCATTCCTCAAAACCCCACTTATCCTTCAAAGCATTTTCCCTT CCGCACCACACTTTCTTCTCCTTCCCGTTTTCCTCCACCACCTGGTAATTCAATTTTGCTTTTCCATTATTCTCTTTGTT GTTCATCTTCAATGGAATCAATCCTCACATTTAGTTTTTGTTAAAAAAAAAATTATCATTATTATTTTGTTTTAATTTTG AGCTGAGAATTGTTTTGTGTGGTTCTGGATTTTGCCCTAGTTGTGTCTGCCGCGCCGGAGAACCAGTTGAGCGTTGGGGA AGGGGAGGATACTGATACAACTGAATGGGCACTTCAAGGTACTTTCTAATGTCTTTAGTTAACCAATAATCTAAGGCCAT TTTTGGAATAATCATGTTACAACTTATGATTTCTATGGAAGTTTTTAGTAAAGTATGCTCAAAATGGTTTTTAGGCATGT AAGTTATTTGTCTAGTAAGTTGAATCAGTTTTTATTTTTAGTTTTTATAAGATAAGCTCGAATAAGGTCGAGAAAGACTG ATAATGAGCATTTTTAGTATAATTGAGAGGAGATTATGTCACATTTGCATTCATACATCAAGCATAGGACGTGACTTTGA TGATATTAGTCTTTAGAATAAGGTTGAAGTGCATATTGTAAGTCATCTGCAGAACACTATGGTTCAGGATGGGAATGGAT CTGCTGGAGTTTGGTAACAGGTGTAGTTCTTGCATCCAACAGCTAACATGTGGGCGGAAAATCACTGTGGGGAGTAGAGA GTCAATATGCATAATTTGGTTAGTTCAAGGAGTCAAGTGTTAGGAACTTGGTATTTTATTTGAAAGAATAGGGAAAGTAT CCCCTAATTATAGCATTGCAGATCTTTGAGGGTCTGCACCTCCTTGCCCTAAGCCCTCAATTCTCCACAAATATATCGAC AGTTTAACTCTCTTAAGTCTTTTATAACATACTATCTTTTCCTAATTCTCTTATTTTATCTTATTCCTAGTAATCCTAAT TCCATAACAAAACAATTCTTTTATGATTGCAATATAATATTTAACAATATATTCTTCTACTAACTCTGGAGTGATTCTTT CATAATAACGATATTTAAACCTCTGATAGCACACACCTAACGTCAAGTTGCTTATTCTGAAATGCAAAGGAGTCATCTGT AATTGATTTTTAGTTTAAGGGGTTTCTTGGGTTTTTACTTTTGTCATCATGACCAGACCATGCATCATTTGATTACCAAA GGTTGTATGACTTTTTGTCTTCAACTATTAGGAAGAATTTAAAGGAATGACATAGATTGAATCCCAGAGATAATACAGAG CAATCTCTTATTAATTTTTGTTCTTTAGTTTTTTTCTTTTCCAAATATTTTATAATTAAAAAGATAAGTAGATTTGTACA TTGACATTATTCTGTGGACTTCTTTAGATTTAAGTCACTGGACACGTTCTAGTTTCTCTCTTGCTTTTGTTTAATGATAA ACTGCACCATAATGCATGGATGGGTTTAATAAGAGGAATGTCGCTAAAATCAATTCTGGATTAGTTGTCATGGAGTAGTG CATAACTTGGCATTGTTTTTCAGCTTTTTATTCCCTGAGGAAGGATGTTGAAATTACGTCTCAGCGTGTTGAAGAAATAA GAGAATCTTCTGGTATACAACTATTGGAGCAAGAGCTTGCCAATTTGGAGGAGAAAGCATCTGCTACCTCCTTTTGGGAC AATCGAGCCAAAGCTCAAGAGACTCTTTCGACATTGTCTGATGTCAAAGATAAGATTAACTTGCTTGCTGAGTTCAAAAC CCAGGTTAGATGCAACTCTATCAACTTTTAACAATTATTTTATGAGCATTTAATTAAAGAACCAACATTTAGTCATATCT GTGTGTGCAAATAAATAAAGGTGATTCCAAGTTTCAGTTTTCACTTGTATATGCCTTAGAAACCACTTGTCAAAATTTAC TATCAATAAACAGTGGAAGGTAATTTTGTAAAATTGAAACCCATGACACAAAGTTGAACAATACTTTGCATCTTTTTCTC TGAACAATTTCACATCAGTTTACTTTAGAATTTATAAAAACAAATATTTTCATTCTTTAAGAATATTTGAATGTTGTTTT TGTTACTACATTGTGTTGGGTGTTTTCAAATTTATGCACAATTTACTAAAATTCTCCCGTTGTGCTCCCTCATCCCTATC CTTTGTTACTACATTGTGTTGGGTGTTTTCATATTTATGCACAATTTACTAAAATTCTCCCATTGCGCTCCCTCATCCCT ATCCTTGTTTTCGTAATCTGTTGTTATCCAATAAAATCTCATTTATCTAGGAAATGAAAAAATTTAATTTCTAAATTAGT TCCGTCATGGAATTTTTTTTAAAAATTGAAGCCAACGATATATGGAAATGTAACTGTTAGAAATATAAAATAAAACAATT CATGTTTCCGTTACCCAATAGCTTAAGCTTTTGAGATAGTTGGTTTATGACATGGTATCAAAGCCTCTATAACCAAGTGG TCTAGAGTTCAATCCTTGTTGCCCCCAATTATTCTAATAAAATGTTCAATTTCAGCATGTGGTAGGTGGGTCTGTGCACT GTCCACACTTCAAGTCCAAGTTGGCTAGTGTGAGGGAGCGTATTAGAAATATGATATAAAACCATTCATGTGTCTGTCAC CCAATAGTTTAAGCTTTTGGGATAGTTGGTTCTTGATAGGAACAGATCCTCACTACTCTTATTTATAGTACTGAATGCTT AGTACTGTCTCTCTCAATGACTCATTCATTGCATGTTGAGTGTCTCTACTTCTTTTCTTGTGTCAATTAAGTTGTGCACC AATATGGATCTTCATCACAATGAATATAGGTTGAGGATGCAGAAACAATAGTTAAGCTGACCGAGGAAATGGAATCATCC ATTGATAGAGCGCTTCTTGAGGAGGCTACTAGTCTTATTAAAGAACTGAATAAATCACTAGATCGATTTGAGCTGACTCA ACTTCTTTCTGGACCTTATGATAAAGAAGGTGCTGTTATTTCTATTACAGCGGGTGCTGGAGGTACTGATGCACAGGTAA ATAACTATCTATGTGCAGATCTTATAGTAATGAGTTTGTTTCTTTCATTCCTAGCCGTAGGTGAAAACTTCTATTGCACT GGTAGAAAGGAAGAACTTGTATACCAACAAAAAGCTAATTTTTTTTTCACATCCTGAGTAAATAAATATTCACTGCAGCT ATGACTTCAGAATACGGCCTCTTTCTCTCAACATTTTTTTTACCTCTCCAGGTTTTCAGGAGTATTTGTTCGTATGTATT AGCAAATAAGTGACAGTCATATGGAATGACATCTGGACAAGTACTCTTGTAACATATGGGATGTGGGTTTGTTAAGCATT TAACTTTTTAATTTCTAAAAAAATCATCATATGGGGAGCTTGTTTTACTAATCCCTATTTTCTAGATCATGATATAAGGG GCCTTCCCTGTAGTTCTAGAAGATGCAACTTACCCATCTTTCCATTCCTTTTTCTACTTGTATTTTGCTCCGAATTTGAG TACTTGATGGTGATTCTGAGTATTCAGTTTCAACTTCTGTACGATATTATCATTTCCAGTGCAGGATTGGGCGGACATGC TTCTTAGGATGTACATGAGATGGGGTGAGAAACAGAGATACAAAACCAGAGTGGTTGAGAGATCCCCCGGAGAAGAAGCT GGAATTAAATCTGCCACCATTGAGGTTGAAGGCCGTTATGCTTATGGGTATTTGTCTGGGGAGAAAGGAACACATCGCAT TGTTCGGCAATCTCCTTTTAATTCCAAAGGTCTCCGTCAGGTATTAATCAACTTTTTGCTATGTTGATTGCATAGAAATG ATGTCCATGAATGGTTTTTTTAAAATGTGCTTAGTCATCTCTCTTCAATTATCAAATATATCAACTTTTGTTTAAACAAC AAGGTTTTAATATTAAAATATTTAAACAGACGAGCTTTTCTGGTGTTGAGGTCATGCCTCTTCTTCCAGAAGAATCTCTG GATGTTGAAATCCCTGAGGAGGACCTGGAAATTAGTTTTTCCCGAGCAGGTGGAAAAGGAGGTCAGAATGTGAACAAGGT TGAAACTGCAGTCCGAATTACACACATCCCAACCGGTGTCACTCTTCGCTGCACAGGTTCTTCCCCCTTTGACTCTTAAT TAATATGTGAACTCATCTTCCATGTTTCTGCGGCTTCTTTGGAACAGAATATAGTTGGAGACAATTTATACTTTAGAAAC ATAATTTAGTCACATTTTAAGTTCAATGGACCCATGCTTCAAACTTAAGCCACAAGCTGTTTCTTCTTTAGGAATTCATA TCCCCACTTTTACTCTTACGAGCGCCATGACCAGAAATACTCACTTAGGAAATTAATTTATAAGCTCAGAGTGGTCTCAG TCAAGTTTCAAGTAGGCTATTCATGATCTGAATCCCATGATTCAATTAGATTTAGCTAGTCTTTGATTCTTGTATGTGAT GAATTGCGAATGGCTTTGTATACATGCATGAATCATATTGTGAAATCAGATAAGCTTAGCTTGTGATATCAGAAGGAACT AAAGGACGCTACTAACACATAATATTCGATTATTGCATTGCTTTAATTCCATTTTCTAAACAAGGGCCTCGTAAGTTAGT AGTTCACTCTATGTGACCTTGTTATCCATAGGTTTATTCGTTGTTTGAAACATAGATCTTTTTTGGATTCAATTCGATTA TCTATACTTTTACATGCCAGTTTTTAACTTCAAACTACCATTGTGCAGAGGAGAGATCCCAACTAGCCAATAAGATCAAG GCTCTAAGCCGTCTGAAAGCGAAGCTGTTGGTGATAGCTGAAGAGCAACGTGCGTCTGAAATTAAGCAGATTCGGGGGGA TGCAGTGAAGGCTGAATGGGGACAACAAATACGGAACTATGTATTCCATCCCTACAAACTAGTAAAAGATGTAAGAACAG GGCATGAAACGCCAGATGTCACCTCTGTTATGGACGGCGAGTTGGACCCCTTCATCAAATCTTACCTCAAACACAAGTTC AGCATGACAATGTCTACAAGTGGTGTCAACTAATATCTTCTAGAGGCTGTACAGCAAGGCGAGCATAGGCATCAGTCACA CGAAAGAAAGAAATAATCTTTCAGGGTGGGTGAAAATGGTGGAGAGGAGATAGAAAATCAGTTGTGCAATTCAGAAAAAC TGAAAAAACCTTGTTGGTGGATCTTTTGTCAAACAATTAGTCTTGCCATATAGTATTTTTCCTATCTTCTATAAGTAGCC TGCAGGAGGAGGTGCGGTTTGGTTGTATCAGGGGGCTTTGTATCCTCTTACAATGCTAAGTTAATTAGACAATCTCTGTT GACGTCTTTGCTATTATTTTCCATTCACAATTTGTCCTTTTTACTGTATATTGTCATTTGAAGCTGGGTGGTCCATGGAA ATTGATTCCCTACAGTTGGGAATCCCTACATTCACGCGCTTTTGATCTTAAATTTTAAGAGATGTATGAGCCGACTGATC TTTAATCATATGGTCCATATATCATGAATGGGTGAATGTAGGACATCTTTGACTGTAAGTGATCTTAATCATATGATCCA GATATCATGAATGCGTGAATGTAGTGTATCTTTGACTTTAAATAACCCAAATCCGATTAATACATATAGTTGAAGATAAT GCAGCTTAGCAGCTGCAAATCTTAAATTGAAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0487600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTCTTAGGATGTACATGAGATGGGGTGAGAAACAGAGATACAAAACCAGAGTGGTTGAGAGATCCCCCGGAGAAGA AGCTGGAATTAAATCTGCCACCATTGAGGTTGAAGGCCGTTATGCTTATGGGTATTTGTCTGGGGAGAAAGGAACACATC GCATTGTTCGGCAATCTCCTTTTAATTCCAAAGGTCTCCGTCAGACGAGCTTTTCTGGTGTTGAGGTCATGCCTCTTCTT CCAGAAGAATCTCTGGATGTTGAAATCCCTGAGGAGGACCTGGAAATTAGTTTTTCCCGAGCAGGTGGAAAAGGAGGTCA GAATGTGAACAAGGTTGAAACTGCAGTCCGAATTACACACATCCCAACCGGTGTCACTCTTCGCTGCACAGAGGAGAGAT CCCAACTAGCCAATAAGATCAAGGCTCTAAGCCGTCTGAAAGCGAAGCTGTTGGTGATAGCTGAAGAGCAACGTGCGTCT GAAATTAAGCAGATTCGGGGGGATGCAGTGAAGGCTGAATGGGGACAACAAATACGGAACTATGTATTCCATCCCTACAA ACTAGTAAAAGATGTAAGAACAGGGCATGAAACGCCAGATGTCACCTCTGTTATGGACGGCGAGTTGGACCCCTTCATCA AATCTTACCTCAAACACAAGTTCAGCATGACAATGTCTACAAGTGGTGTCAACTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0487600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLLRMYMRWGEKQRYKTRVVERSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLL PEESLDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQLANKIKALSRLKAKLLVIAEEQRAS EIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETPDVTSVMDGELDPFIKSYLKHKFSMTMSTSGVN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF75620
1 220 220 4.45E-86 –
PANTHER
PTHR43116:SF3
1 225 225 5.0E-152 –
PANTHER
PTHR43116
1 225 225 5.0E-152 –
Pfam
PF03462
1 74 74 2.0E-26
IPR005139
SMART
SM00937
1 49 49 0.0024
IPR005139
Gene3D
G3DSA:3.30.70.1660
3 214 212 3.6E-80 –
Gene3D
G3DSA:3.30.160.20
80 176 97 3.6E-80 –
Pfam
PF00472
85 193 109 1.7E-35
IPR000352
ProSitePatterns
PS00745
100 116 17 -
IPR000352

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003747
Molecular function Translation release factor activity Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
Subterm of
GO:0006415
Biological process Translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0487600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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