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IPR005139

Source: InterPro

Description

IPR005139 is a Peptide chain release factor.

<p>This domain is found in bacterial, mitochondrial and chloroplastic peptide chain release factors. In bacteria, termination of protein synthesis depends on the type I release factors, RF1 and RF2 [[cite:PUB00003804]]. Both contain this domain.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006415
Biological process Translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
Subterm of
Part of

Associated Lotus transcripts 17

Transcript Name Description Predicted domains Domain count
Lj0g3v0195229.2
– PREDICTED: peptide chain release factor 2-like [Glycine max] gi|356571075|ref|XP_003553706.1|
Domains
9
Lj1g3v2840270.1
– PREDICTED: peptide chain release factor 2-like [Glycine max] gi|356531868|ref|XP_003534498.1|
Domains
8
Lj1g3v2840270.2
– PREDICTED: peptide chain release factor 2-like [Glycine max] gi|356531868|ref|XP_003534498.1|
Domains
16
Lj1g3v4789600.1
– PREDICTED: peptide chain release factor 2-like [Glycine max] gi|356571075|ref|XP_003553706.1|
Domains
16
Lj1g3v4830340.1
– PREDICTED: peptide chain release factor 1-like [Glycine max] gi|356503962|ref|XP_003520768.1|
Domains
14
Lj1g3v4916370.1
– PREDICTED: peptide chain release factor 1-like [Glycine max] gi|356505530|ref|XP_003521543.1|
Domains
10
Lj1g3v4916370.2
– PREDICTED: peptide chain release factor 1-like [Glycine max] gi|356505530|ref|XP_003521543.1|
Domains
15
LotjaGi1g1v0487600.1
– Peptide chain release factor, putative; TAIR: AT5G36170.1 high chlorophyll fluorescent 109; Swiss-Prot: sp|Q9LVY0|PRFB1_ARATH Peptide chain release factor PrfB1, chloroplastic; TrEMBL-Plants: tr|G7KSD8|G7KSD8_MEDTR Peptide chain release factor 2; Found in the gene: LotjaGi1g1v0487600
Domains
11
LotjaGi1g1v0487600.2
– Peptide chain release factor, putative; TAIR: AT5G36170.1 high chlorophyll fluorescent 109; Swiss-Prot: sp|Q9LVY0|PRFB1_ARATH Peptide chain release factor PrfB1, chloroplastic; TrEMBL-Plants: tr|I1L681|I1L681_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0487600
Domains
16
LotjaGi1g1v0748100.1
– Peptide chain release factor 1; TAIR: AT1G56350.1 Peptide chain release factor 2; Swiss-Prot: sp|F4I532|PRFB2_ARATH Peptide chain release factor PrfB2, chloroplastic; TrEMBL-Plants: tr|A0A0B2SEV9|A0A0B2SEV9_GLYSO Peptide chain release factor 2; Found in the gene: LotjaGi1g1v0748100
Domains
12
LotjaGi1g1v0748100.2
– Peptide chain release factor, putative; TAIR: AT1G56350.1 Peptide chain release factor 2; Swiss-Prot: sp|F4I532|PRFB2_ARATH Peptide chain release factor PrfB2, chloroplastic; TrEMBL-Plants: tr|V7D0Y9|V7D0Y9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0748100
Domains
17
LotjaGi1g1v0748100.3
– Peptide chain release factor 1; TAIR: AT1G56350.1 Peptide chain release factor 2; Swiss-Prot: sp|F4I532|PRFB2_ARATH Peptide chain release factor PrfB2, chloroplastic; TrEMBL-Plants: tr|A0A0B2SEV9|A0A0B2SEV9_GLYSO Peptide chain release factor 2; Found in the gene: LotjaGi1g1v0748100
Domains
12
LotjaGi1g1v0754900.1
– Peptide chain release factor 1; TAIR: AT2G47020.1 Peptide chain release factor 1; Swiss-Prot: sp|A5V9C3|RF1_SPHWW Peptide chain release factor 1; TrEMBL-Plants: tr|K7KGG4|K7KGG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754900
Domains
14
LotjaGi1g1v0768000.1
– Peptide chain release factor 1; TAIR: AT3G62910.1 Peptide chain release factor 1; Swiss-Prot: sp|Q8RX79|APG3_ARATH Peptide chain release factor APG3, chloroplastic; TrEMBL-Plants: tr|I1JQI6|I1JQI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0768000
Domains
16
LotjaGi1g1v0768000.2
– Peptide chain release factor 1; TAIR: AT3G62910.1 Peptide chain release factor 1; Swiss-Prot: sp|Q8RX79|APG3_ARATH Peptide chain release factor APG3, chloroplastic; TrEMBL-Plants: tr|A0A151TWB3|A0A151TWB3_CAJCA Peptide chain release factor 1; Found in the gene: LotjaGi1g1v0768000
Domains
10
LotjaGi5g1v0134400.1
– Peptide chain release factor, putative; TAIR: AT3G57190.1 peptide chain release factor; Swiss-Prot: sp|F4J264|PRFB3_ARATH Peptide chain release factor PrfB3, chloroplastic; TrEMBL-Plants: tr|A0A151U2X3|A0A151U2X3_CAJCA Peptide chain release factor 2; Found in the gene: LotjaGi5g1v0134400
Domains
9
LotjaGi5g1v0134400.2
– Peptide chain release factor, putative; TAIR: AT3G57190.1 peptide chain release factor; Swiss-Prot: sp|F4J264|PRFB3_ARATH Peptide chain release factor PrfB3, chloroplastic; TrEMBL-Plants: tr|A0A151U2X3|A0A151U2X3_CAJCA Peptide chain release factor 2; Found in the gene: LotjaGi5g1v0134400
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF75620 SUPERFAMILY 1 5.88