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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0489900 |
| Transcript ID | LotjaGi1g1v0489900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome c; TAIR: AT4G10040.1 cytochrome c-2; Swiss-Prot: sp|P00051|CYC_CUCMA Cytochrome c; TrEMBL-Plants: tr|I3T359|I3T359_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0489900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100321094..100323557) extracted from Lotus japonicus Gifu genome v1.2.
CCACAAAAGAATATTCTGAAAAAAAAAATGATATTATTATTTAATTTAATATAAATATAAATTAATATAATTCGGTGGCT CCAGAGGTTTTAGGAGTCCTGTTTTTCTCACAAAGGGTTTGAACAAAACATTGTCCGAGCTGTGTCGGCTTCTCCAATGG CGACATTCGATGAGGCACCACCCGGAGACACCAAGGCTGGCGAGAAGATCTTCAAGATCAAGTGCGCTCAGTGCCACACC GTCGACCAAGGTGCCGGCCACAAACAAGGTACATCTTCTCATCCCACCAAACCCAGAATCAGATCTACACTTTTCCATGC CACTTTCACATACCCTTTTTGATTTACTTTCAATTTATTCATATATTTGCTACCCCAATTACTTTACCATTGTCAAGTTT TGATTTTTATTGATGGGTATGCTTGGAATGTTGAAGATCATGTTATGGGTACTCTTTAGTACTTTCTCCATTATTAAGTG CTTTTTAGTGTATAAAAGTGCTTTTTTTTTCATCCTTAGGGTGTGTGAGTGGAAAACAGAGATGGGAACTTAGAAAGGGA AGGAAGAGACTGTGAGACATGTATATAGATATAAAAAGTGTTTTTTTGTTCATCCTAGTGCATTCTTCAACTAGCTGCTG TTAGTATTTTGTCTTATATATTTTGAACTTGGATTGCAATTTTTAATTTGTTATTTTGCAATTTGTTTAGTATCTATTGA ATTTCTTGTTTTTGCGCAGTTGAATGAAAAAAAGCCTTAGGGTTTATGAGGTTCTCTTTTTGTTCCTATTGTTTGTCATG CCACTTATCTGATTACAGTCATGTCATTAGTTTATGTTTTCTGTTCCCCCCAATTTGAATAATCCATATTTGATATTGTA AAAACATAAATGTTTGCTTTGTTTGTTTAAATTGTTAGGACCCAATCTGAATGGTTTGTTTGGAAGGCAATCTGGCACAA CTCCTGGATATTCCTATTCTGCAGCTAACAAGAACATGGCTGTGATTTGGGAGGAGAAGACCTTGTATGATTACTTGCTT AACCCCAAAAAGGTACAACATGAATTAGTATTTCAGTGTTTCTGTATTGATATGGCAAACAAAAAAGTGTTGCTGTATTG GAATGCTATGGCTATTAAAAATCATTTCGTTTTACTTTCCAAACTATAATCAGGGTATTGTGCTGTTAATTTTATTTGTA TTATTTCAATTTACAAGTTGACATTAAAAATAGAATTCCACCTCAATATTAGCTTGTTTAAATGTGTGTTGGACACACTC CAAAGCATGATAGCGGAGAAGTTTCATGTTGTAGCTTATGAATTAATTTGATTTTGAAGTCGAATGTGGATCCCAAATGG ACAACCAAACATGAACTATGTAACTAATTTGTGTTTTCTTTTATCCTCTTGCAGTACATTCCAGGGACGAAGATGGTGTT TCCTGGTCTCAAGAAGCCACAGGATCGTGCTGATCTGATTGCATATCTGAAACAATCCACTGCGCAATGATTGAATTTCC ACACATTCAGCTTATCAATGTGCTTTTGGAGTTCTGGAGATTTAATTTTCTGACATTGGATTTTCGGCAAATAAAATAGA CTTGATTAGTTTTCAATGCTATTTTATTCATTTTGCATTACTTCTTCATAGGTTGCCACATATATTTTCTGGACTAATGC TCGAAAGAATTAGCTGTTGAAAGTTGAAACAATCTTATAAAGTTTACTTATCTGGATGCACATCTAGTCCTGTTATGCTG AGACTGGAATTCAAATATTCAATTCAGTATTAAGCAGCCCTAAATTGTCTGAAATTTTCTCACATTGTATTGTTTGAATT TTGAAATCATCGCATGGACTTACATAGCATAGGAATAGAAGGGAGGGGAGGGTTCTTTAGCCTTTGTTTGAGAGCTGGAT TAAGTGTTGGATTTTGGATGGGAAGGAAGGGAAAGGAGAAACTTTCCTCTTGTTTGGGAGTTTTTTTTTAAGAAGTGAGG AAGTTTGGGAAATTTTTAAATCCCTTCTTTAGTGTTTTGTAGAGTTTCTTCTAATTGGTAGTTTTGAGGAATTTTTAAAC TTATAAACAACGGAGGGCCCTCCTTCTCTCTTACCCTCCCCTTTCCCTCAATGTTTTCTGCTCACAAACAAGGAAAATAA TTGTAGACATTTGCCGGACATATATTTAACATAGGATAAATGGTCAAATTAAGTCAGTATTTATAATAATGACAACAACT AGACGTTATCTTTTTGTCGATAGACTAAAATCAAACTTGTTTATAAAATTGAAGACTAATTTGACGATTAATCCTTTTGA GTTAGAAAAGAAGAGAAGAGATAATGGATGTGATTATGATAGAAAGGAAAGATGAAGAGAAAAATGAGGTATTTGCATTA TATGTCTCAATATTACTAGTGTCTTGTTGACCGTTGTAAATTTGTTTTAAAATCTAAAAACCTC
CDS sequence (LotjaGi1g1v0489900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACATTCGATGAGGCACCACCCGGAGACACCAAGGCTGGCGAGAAGATCTTCAAGATCAAGTGCGCTCAGTGCCA CACCGTCGACCAAGGTGCCGGCCACAAACAAGGACCCAATCTGAATGGTTTGTTTGGAAGGCAATCTGGCACAACTCCTG GATATTCCTATTCTGCAGCTAACAAGAACATGGCTGTGATTTGGGAGGAGAAGACCTTGTATGATTACTTGCTTAACCCC AAAAAGTACATTCCAGGGACGAAGATGGTGTTTCCTGGTCTCAAGAAGCCACAGGATCGTGCTGATCTGATTGCATATCT GAAACAATCCACTGCGCAATGA
Protein sequence (LotjaGi1g1v0489900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATFDEAPPGDTKAGEKIFKIKCAQCHTVDQGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVIWEEKTLYDYLLNP KKYIPGTKMVFPGLKKPQDRADLIAYLKQSTAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 113 | 113 | 6.4E-73 | – | |
| PANTHER | 1 | 113 | 113 | 6.4E-73 | ||
| Gene3D | 2 | 110 | 109 | 1.6E-42 | ||
| SUPERFAMILY | 9 | 109 | 101 | 8.11E-36 | ||
| ProSiteProfiles | 10 | 111 | 102 | 16.4 | ||
| Pfam | 13 | 110 | 98 | 2.4E-12 | ||
| PRINTS | 22 | 29 | 8 | 2.5E-36 | ||
| PRINTS | 35 | 50 | 16 | 2.5E-36 | ||
| PRINTS | 51 | 61 | 11 | 2.5E-36 | ||
| PRINTS | 65 | 81 | 17 | 2.5E-36 | ||
| PRINTS | 84 | 94 | 11 | 2.5E-36 | ||
| PRINTS | 101 | 109 | 9 | 2.5E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi1g1v0489900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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