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LotjaGi1g1v0496000.1

Overview

Field Value
Gene ID LotjaGi1g1v0496000
Transcript ID LotjaGi1g1v0496000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description COP9 signalosome complex subunit-like protein; TAIR: AT1G02090.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7; TrEMBL-Plants: tr|A0A0S3SAE1|A0A0S3SAE1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0496000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:101086025..101092538) extracted from Lotus japonicus Gifu genome v1.2.

ATAAGAAAACCCACACAGTGAAGAACTCTCATAACTCCGAGGGAAGCTCTCACTACCCAAACACTCTTTTAAATTCAATT CCTGAACCGAAACCCTAAACCTAAAACCCTTCAAATTTCCCCCAAATCGAATCGTTCCTCTCTCTCACGAAGCCCTAGTT CTTCTTCTCGAAGATGGATATCGAGCAGAAGCAATCGGAGCTCATCGACAACTTCGTGAAGCAAGCCTCTGCTGCACCCA ACGCTCCTGCACTCGCTTCCGTCGTCATCGAAGCCACTTCTCACCCATCCCTCTTCGCTTTCGCCGAGATCCTTGCCCTC CCTAATATTCTACAGGTTCGTATCCTCTCTCCCTCTCTCCGCACTTCAATTTCTGTGTATTTTGCTTTTTTTCCGATTAC TTTCTCTTTTGTTGTTCTTGGTGATTTTTTTTTAGTTTTTTCATTATTTGCATCCAAAAGTGCTTGTTGATCGCAAAGGG TAACGGAAAATCAAAAACTTTTTACGAAATTTTCTGTTTTAATGTAAATATTTTTTGCTGTTTGTGTTTGCAGTGCTTTT GAATGACTCTATTGTATTTTGGGTGATGTAAACGATGAAACTATTTCTATTAATTTATGTTTTATGATGGCATTATTTTG TTAATGCGCTTTCTGCTATGTAATGCAGTTCTGAGTTTATATAAAAACTTCTAAGTAACACGAGGACTCAGATTTGCTAA TTCATTTTTTGACCCGTGATTTCTTGCAGCTTGAAGGAACTGAGAATTCTGCGCACCTTGATCTGCTACGGTTGTTTGCC CATGGAACATGGAGTGATTACAAGAGTAAGCCTATGGATTCTCCTTTATGTTTTTTTTTCTATCTATTTTTTTTCCTGGT GTGTATTTTCTGGGTTAATTGATTGCTTTCCTTTTCCTGTAGTATGATGTTTTACATTTGATGAATATTTTAGCAACCAT GCACTACTTCATGATGACATGGTCATGGTGATAAGGGATTTTGAATTTTTTTCCCCTTAATGCAACAAGTGGTGTTAATG TCATGATATAGGAAGTTGTAACCTCTATAAGGATGTTCATATGGAAGAGGATGTACATATAAAACAAATTACTTTGCGAT ATTTTTTAAGTGCAGCCCTCACTTAGTCACTTAGAGGTGCTAAATCCAACATCCTTAATGCTTGTCATAGCTATTGTTAA TTTGAAGGAGATGTGTTATGTGTGTCCATGTGGACTTATAATAAGGAATACATCCCAGCAGAAGCATATTCATTTTTTGA TTGTTAACAATTATGTCCTGCTAGGTGTAAAGCCTTTTGAGTATTCTCCTCACATGATTTGCTACTTTGTAAATAATATC ATTAGGAAAATTAGCGCACTTATCCTTATTACATGATTTATAATTATTTCTTAGTTGTCTGTTTTATTTAAAACTATGTA TATGTAAATAGAAACAATATACTAGTGTTTATTAGAACGTTTAAGTGACTTGCAGGTAATGCTGATCGTCTTCCGCAGTT GTTACCTGATCAGATCCTCAAGCTTAAGCAACTCACAGTTCTTACATTGGCTGAGACAAACAAGGTATTGCATATTAATC CAAAAGTTATTTGCTAACTTGTTTTGCTTCTTTTGCTTGACTTTGTTATTGAGGGTGATTACTGAATCATTATAATCTGT GTCACGAGCAAGTGGCCAACTCAAGTCCAGATGATTTGCTTGTCTTTTATTTATATGAATTTTGTTATAAGGGAAAGTTG ATATATACTATATATTTATATATATTCTTAGTAATGTCTTAATTATTTGTTTTAGTTTGGGGTAAAAGATTAATTTGTCA GCTTTCTCGACTAATTAAATATTAATAATTTTGAAAAGGAGAAAAGTCCTTGCTGTTTTGGACAGGATTATGTTTTTTTT TTTGGCTTTGTTTATGTTTCCACCCTGAGCTGTTTCAACTTTCATCAAGTCTTTTCCAGCATGTAGGCATTGGGTGGCCT TGCTTCCTTTGCAGTCTCTTAATTTCCTTTATGTTTTTGAGCTTGTCTTACCCCGACCCTTTATGTGAATGCCTTTATCT CTCTTTATAATATACTGTTCAAGACAATGGGAGATATTCCCTTGAGAGATGTATGTTCCATTTGTTAATAAGCTGTCCCT TTTCTTGATCAGTCATTTGGGTATGTTGCTTCTACTAAATTATTAACCACCGTGCTGCATTTTCTTGCTTCTAGTTCTTA TACAAATATGTTGGCATAACCTCGTCTTATAAGAAACTAAAATTTGGTGGTACTGTTCTTCAATCCTTCGATGCATTTTG CAAATGCTTGCATCTTTAATGGTGTCTTTTTGCCCCTAGTCCGATTATGTGATTAGGTTATCTTTATGGCGTCTCTGGTT TTTTGCACAGGTTTGATTAAGGGTTTGGGTTTCTCTTCTTTGAAAAGATATCTTACCATTGCCTTCGTCTTATCTGATAA AAATTCTTTTTCAGTTTTTCTATCAAAGACAAGGAAACCAATTATTCACATTTCTTGATTTTGTATGGGATTGTTTCCCA ATTTGTTATGTTAATTTTGCTTTTCCTGTTTGCTATGTACTTTTGTAGAACATGTTCTGGTTGATTAACCCTTGGCAGTT TCTACTTTTTGTTTTGCTGTTTGAGTGTTTGTCCTTGCAGAGCTCTTGACACTTGCAATCAATTTTCACAGTTTCAATTG TTTTTTAGGTACTACCCTATGACCAACTGATGCAGGACTTAGATGTGACGAATGTTCGTGAACTTGAAGATTTTCTAATC AATGAATGCATGTATGCGGTAGGCATCATTCCCTTTTTGCCATTACCATTTATATTGTTTTTTTTGTCTTGTCTTTCTTC AGAAGATGTTGTATAGTTTAATAAATTGGTAACTTGGAAACCATATTTCATGAGCGGAAGATGTGTTTTCTAACTTTGCC TGCTCTGATCAGGGAATAGTCAGAGGAAAGCTGGATCAGTTGCGGCGATGCTTTGAGGTCCTACCTCATTATCTTTTTTT TCCCTCTTTTACTTGCAGTTTGAACCCTTTCTATTTTTTCTTGTAATGAGACCTCTAGTAGGAATTGATCTGATCATTGA GGGGGATTTTAGGTCCAATTTGCAGCAGGTAGGGACTTGAGGCCCGGTCAATTGGGAAGTATGATACAGACACTCTCTAA CTGGTAATCTATCTTTTGTCAAGTAGGGGCTTGTGATTATTAGTAAATTAATTATCTATGTTGAAACAATATTTGGAATT TCCTTGAATGACGATAAACATGTTGATATCTCTATAAACTTGGTATTTCTTTGCTTCACTACTTCAAAGCTTTGCATTTT TAGACAGTGACCACTTTTGGGAATAGTCTATATTTATATCTATTTAGCTTCTGATCTTGGTTGAAGTTGATTTGAACATT CGATTGTCAACTTGCCTCAATTTGTTGTGTATTAGATCTTCTGTTTGTTAAATTTTTGTTTTGCAATTCTTTGGTTCAAG ACTCATTGTGGTGTTCGTATAGACAATGCTAACTTTATGGGGTGTGATGTATGAGGCTTCTCTCCATAATGCTAAAATTT AATTCATGACTTGGAAACAGGTTGTCTACATCAGAAAATTTGCTTGTTTCAATTCAAGAGAAGATAAAATGGGCTGATGC TATGAGTGAAGTTGACAAGAAGCACAGGAAGGATGTGGAGGAGAAGGTAGAAGAAGTGAAGAAGTCTCTCTTCAAGGTCG GTTGGATTTATTTTTTACATCATTTTTTCTTTTCAATACAAATGAAAAAGTGCCACATAAAAATGCTCGCATGTAATTTT GATCTTGTATAGATTTTCTCCTTTATGTTTCTCTTTGTTGAGATTATGTGTGAGATTGTGTACGATCTGATTACTTGTGA TTTGAGAGCGTCGACCACTCATCCTCCTCTTCCACCTCTGTGTGCCTGACTTAGCCCTCCATGACCTGCAAAATTAGATA TAATAGCAAAGAACTCAAATTTGGTTGAGTTGAGAGAGCCAACTGTTGATCTTTCTGCTGGAGCTGGAACTAGGAAAAGT AGACTGATAAGATTCTCCATTGAAGGAATACTCAGAGTAGTTAGGATTTGGTTTCTACCTTAATCATATTCCTTGTGAAG GCCATGAAGGTGACGTTTAAAAACACTATACTAGGGTAGCACTTAGCAGCTGCTATTTTAAAAATTTTAACTACCAGTGT AGTAAGTTAAACTATATATTATATTCTATCCAAAAGATTTATGAAAATTAATCAAAGTTCAAGATATTCAATCCATAACT TAAACAAAACATACCAATTCATAACAACAGAAGTCAAGAAAGAAGAAGAAACTGTAATCATTGCACATGACCGTGGCAAC AATGAATCAGTACATCCGAAAAATTACAGCTGGCAATAGTTCTCTCAATGTTATTCTCAACAGAAAAACCAAGAATACCC CTAAAATTTATCCTAATGTTATTAGGCATTTTTTGCTTTTGAAGCTTTCTCCCTATAGCTGCTACAGAGCGGCAATGGCT GCTTGCTGCTGCGACTTCCAATCGCTTCGTGACGTGAAGCGGTGAAGCTGATAGGGGTCACTCTTTCTCTGCCACAGCAC ACAATTAACAACACTGGGAAGATTGCTATTGGCAGCTTCTGAGTAGCTTCCCTACTTTAATCTTACTCAAATAACAAACA TTGTTGAGCCATAAAAAATGTCATGCCCTTAGATCCTTGTTATTTTATGTCCCATTTTTATGTTGATTATGTCTTAGAAG TTCCAAATGCAATCATGCTTCATTCTTGTTTTCATTGTTGCTGAATGTGACTACATATTTGGGGCATTTGTCCGTAGGAT TGGTTTGGCTTTAAGCTTATCTTTGAATGGAGCCAATCATTATCTGTTAAATTTGGCAAAGGAATGGGTTTTGCAGAATT TTCTTCATCTTAGGAGGAAAATAATCTATTTATTCTTTTAGCAAAATAGGGGTAGGAAAAACATTAGTACTGTATAGTGT ATACCAGAATGGGTTATGTTGGTTAAATCAAATTTGATAATGTCTATGGTTGGTACCAAAAGTAGACATCCCAAACTTTG AGAAAAGCTATATTTTTTTTTTTGAATAATGAGAAAAGCTATATTGATCTGATGATTAGTGTAGCTTGATTGGGTTGCTC AGTTCCTCAAACCCCTCTAACTGTTATACTAGTTATAAAGGATGTGTAAGTTTGGCTACTGCAAGATATGAGAAAAAGAC TATGTACTTAAAGAATTAGGGAACAGTTGTAGTGTAAAGTGTAAACATATACTACGTAAAGATGATAACTGTAGTATAAA AGCCAAAATATCCCCGCGTCTTTATGTTGAGGGCTTTAAAATTAGAGGGCAATTATGTTGCAGAGACACTTACCCTTATT CTTTAGTAATCAAATTAACATTTTCACCAAGTTTCAAACCATGTATACTTCAAGGCTCCTTTGTGAGCGTTTGGAGTTCT ATCAGATAATATAGAAGTATCAGCCTTATTTGTAAAGCATATAATTACCTGTTGTTGTCTATGATTGGGATCTATTGGTA GACGGTCTTACTTACTTCGTGGCAGAAGTTACACACTGTAAGCAGGCCGACATCGACTTCATCAGAGGCCATGAGGAGAT CTGCTCTGAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAACCAGACCGAAGAGGTAATTTGGGAAACCTGTATATC AAAGTAAAGTATTTGATCAAGTATCTTAAACTAATTTTTTTAATGAGGACTAAAATCTAAATGTGTCAAATTTATTTGAA AAATGTATTTAACATATTTATATCATAAGATTCATAGCTTGTAAATTTTGCAGGAGGCGGCATCCAATATCATAGTAAAG GAGCTCGTTGGATGAGTGTTTTAGTTGCTTGCCTGACTTTTATTCATGGCATGCGTTAACTGAGAATATATCAGCTTTTG GAGACGTGTATATCTCATTGGTATTGCACTTGTCTGTCACACCACAAAGCGAGATAGGAACAAAAAAAATTGGGAAGGAA AACATGTTATTTCTTCAAGATTGTAGTTTGGCAATTGATGGCATTCCTTGAACCTTTGTTAATCCTATACTGAGTTGGCA AGTACAAAGCTGAGATGGTGCTGCGGCTTTTTTTAGTGTTTCTAAATGCTTTTTATTGTTTTCTTTGTATTATACTTCAT GTTCATATATGCTGCCTCCATTGCATTGCTATACTTTATGGTAAATACATACATTATAAAAATTAGAAATATATTCTAGC TTAATAGTCTGATGGTTTCCATCTCTGTAAAACTGGAACTGGCGAACAGGTGCAGTTGCAGTAACTTGTAAATGCTATTC CAGTTTAGTTTTCCTTTTTAAACCATTGCATGAAATGAAGCAATATATGTCAGGCTTCTTTGATTCCCTTATCTGTTTTT CAAATTTTAAATTGTTTAAAAAATTATTTTTATG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0496000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATATCGAGCAGAAGCAATCGGAGCTCATCGACAACTTCGTGAAGCAAGCCTCTGCTGCACCCAACGCTCCTGCACT CGCTTCCGTCGTCATCGAAGCCACTTCTCACCCATCCCTCTTCGCTTTCGCCGAGATCCTTGCCCTCCCTAATATTCTAC AGCTTGAAGGAACTGAGAATTCTGCGCACCTTGATCTGCTACGGTTGTTTGCCCATGGAACATGGAGTGATTACAAGAGT AATGCTGATCGTCTTCCGCAGTTGTTACCTGATCAGATCCTCAAGCTTAAGCAACTCACAGTTCTTACATTGGCTGAGAC AAACAAGGTACTACCCTATGACCAACTGATGCAGGACTTAGATGTGACGAATGTTCGTGAACTTGAAGATTTTCTAATCA ATGAATGCATGTATGCGGGAATAGTCAGAGGAAAGCTGGATCAGTTGCGGCGATGCTTTGAGGTCCAATTTGCAGCAGGT AGGGACTTGAGGCCCGGTCAATTGGGAAGTATGATACAGACACTCTCTAACTGGTTGTCTACATCAGAAAATTTGCTTGT TTCAATTCAAGAGAAGATAAAATGGGCTGATGCTATGAGTGAAGTTGACAAGAAGCACAGGAAGGATGTGGAGGAGAAGG TAGAAGAAGTGAAGAAGTCTCTCTTCAAGGCCGACATCGACTTCATCAGAGGCCATGAGGAGATCTGCTCTGAATCTGGT GGAGTGATGGATTATGAAGAAGATCGAACCAGACCGAAGAGGAGGCGGCATCCAATATCATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0496000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDIEQKQSELIDNFVKQASAAPNAPALASVVIEATSHPSLFAFAEILALPNILQLEGTENSAHLDLLRLFAHGTWSDYKS NADRLPQLLPDQILKLKQLTVLTLAETNKVLPYDQLMQDLDVTNVRELEDFLINECMYAGIVRGKLDQLRRCFEVQFAAG RDLRPGQLGSMIQTLSNWLSTSENLLVSIQEKIKWADAMSEVDKKHRKDVEEKVEEVKKSLFKADIDFIRGHEEICSESG GVMDYEEDRTRPKRRRHPIS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.25.40.570
1 170 170 2.4E-68 –
ProSiteProfiles
PS50250
1 160 160 20.361
IPR000717
PANTHER
PTHR15350
4 253 250 1.1E-109 –
PANTHER
PTHR15350:SF5
4 253 250 1.1E-109 –
SMART
SM00753
87 178 92 1.0E-17 –
SMART
SM00088
87 178 92 1.0E-17
IPR000717
Pfam
PF18392
169 215 47 4.8E-6
IPR041481
MobiDBLite
mobidb-lite
240 254 15 - –
MobiDBLite
mobidb-lite
240 260 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008180
Cellular component COP9 signalosome A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome.
Subterm of
GO:0010387
Biological process COP9 signalosome assembly The aggregation, arrangement and bonding together of a set of components to form a COP9 signalosome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0496000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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