Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0496000.2

Overview

Field Value
Gene ID LotjaGi1g1v0496000
Transcript ID LotjaGi1g1v0496000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description COP9 signalosome complex subunit-like protein; TAIR: AT1G02090.2 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7; TrEMBL-Plants: tr|A0A0S3SAE1|A0A0S3SAE1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0496000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:101086198..101090021) extracted from Lotus japonicus Gifu genome v1.2.

ATGGATATCGAGCAGAAGCAATCGGAGCTCATCGACAACTTCGTGAAGCAAGCCTCTGCTGCACCCAACGCTCCTGCACT CGCTTCCGTCGTCATCGAAGCCACTTCTCACCCATCCCTCTTCGCTTTCGCCGAGATCCTTGCCCTCCCTAATATTCTAC AGGTTCGTATCCTCTCTCCCTCTCTCCGCACTTCAATTTCTGTGTATTTTGCTTTTTTTCCGATTACTTTCTCTTTTGTT GTTCTTGGTGATTTTTTTTTAGTTTTTTCATTATTTGCATCCAAAAGTGCTTGTTGATCGCAAAGGGTAACGGAAAATCA AAAACTTTTTACGAAATTTTCTGTTTTAATGTAAATATTTTTTGCTGTTTGTGTTTGCAGTGCTTTTGAATGACTCTATT GTATTTTGGGTGATGTAAACGATGAAACTATTTCTATTAATTTATGTTTTATGATGGCATTATTTTGTTAATGCGCTTTC TGCTATGTAATGCAGTTCTGAGTTTATATAAAAACTTCTAAGTAACACGAGGACTCAGATTTGCTAATTCATTTTTTGAC CCGTGATTTCTTGCAGCTTGAAGGAACTGAGAATTCTGCGCACCTTGATCTGCTACGGTTGTTTGCCCATGGAACATGGA GTGATTACAAGAGTAAGCCTATGGATTCTCCTTTATGTTTTTTTTTCTATCTATTTTTTTTCCTGGTGTGTATTTTCTGG GTTAATTGATTGCTTTCCTTTTCCTGTAGTATGATGTTTTACATTTGATGAATATTTTAGCAACCATGCACTACTTCATG ATGACATGGTCATGGTGATAAGGGATTTTGAATTTTTTTCCCCTTAATGCAACAAGTGGTGTTAATGTCATGATATAGGA AGTTGTAACCTCTATAAGGATGTTCATATGGAAGAGGATGTACATATAAAACAAATTACTTTGCGATATTTTTTAAGTGC AGCCCTCACTTAGTCACTTAGAGGTGCTAAATCCAACATCCTTAATGCTTGTCATAGCTATTGTTAATTTGAAGGAGATG TGTTATGTGTGTCCATGTGGACTTATAATAAGGAATACATCCCAGCAGAAGCATATTCATTTTTTGATTGTTAACAATTA TGTCCTGCTAGGTGTAAAGCCTTTTGAGTATTCTCCTCACATGATTTGCTACTTTGTAAATAATATCATTAGGAAAATTA GCGCACTTATCCTTATTACATGATTTATAATTATTTCTTAGTTGTCTGTTTTATTTAAAACTATGTATATGTAAATAGAA ACAATATACTAGTGTTTATTAGAACGTTTAAGTGACTTGCAGGTAATGCTGATCGTCTTCCGCAGTTGTTACCTGATCAG ATCCTCAAGCTTAAGCAACTCACAGTTCTTACATTGGCTGAGACAAACAAGGTATTGCATATTAATCCAAAAGTTATTTG CTAACTTGTTTTGCTTCTTTTGCTTGACTTTGTTATTGAGGGTGATTACTGAATCATTATAATCTGTGTCACGAGCAAGT GGCCAACTCAAGTCCAGATGATTTGCTTGTCTTTTATTTATATGAATTTTGTTATAAGGGAAAGTTGATATATACTATAT ATTTATATATATTCTTAGTAATGTCTTAATTATTTGTTTTAGTTTGGGGTAAAAGATTAATTTGTCAGCTTTCTCGACTA ATTAAATATTAATAATTTTGAAAAGGAGAAAAGTCCTTGCTGTTTTGGACAGGATTATGTTTTTTTTTTTGGCTTTGTTT ATGTTTCCACCCTGAGCTGTTTCAACTTTCATCAAGTCTTTTCCAGCATGTAGGCATTGGGTGGCCTTGCTTCCTTTGCA GTCTCTTAATTTCCTTTATGTTTTTGAGCTTGTCTTACCCCGACCCTTTATGTGAATGCCTTTATCTCTCTTTATAATAT ACTGTTCAAGACAATGGGAGATATTCCCTTGAGAGATGTATGTTCCATTTGTTAATAAGCTGTCCCTTTTCTTGATCAGT CATTTGGGTATGTTGCTTCTACTAAATTATTAACCACCGTGCTGCATTTTCTTGCTTCTAGTTCTTATACAAATATGTTG GCATAACCTCGTCTTATAAGAAACTAAAATTTGGTGGTACTGTTCTTCAATCCTTCGATGCATTTTGCAAATGCTTGCAT CTTTAATGGTGTCTTTTTGCCCCTAGTCCGATTATGTGATTAGGTTATCTTTATGGCGTCTCTGGTTTTTTGCACAGGTT TGATTAAGGGTTTGGGTTTCTCTTCTTTGAAAAGATATCTTACCATTGCCTTCGTCTTATCTGATAAAAATTCTTTTTCA GTTTTTCTATCAAAGACAAGGAAACCAATTATTCACATTTCTTGATTTTGTATGGGATTGTTTCCCAATTTGTTATGTTA ATTTTGCTTTTCCTGTTTGCTATGTACTTTTGTAGAACATGTTCTGGTTGATTAACCCTTGGCAGTTTCTACTTTTTGTT TTGCTGTTTGAGTGTTTGTCCTTGCAGAGCTCTTGACACTTGCAATCAATTTTCACAGTTTCAATTGTTTTTTAGGTACT ACCCTATGACCAACTGATGCAGGACTTAGATGTGACGAATGTTCGTGAACTTGAAGATTTTCTAATCAATGAATGCATGT ATGCGGTAGGCATCATTCCCTTTTTGCCATTACCATTTATATTGTTTTTTTTGTCTTGTCTTTCTTCAGAAGATGTTGTA TAGTTTAATAAATTGGTAACTTGGAAACCATATTTCATGAGCGGAAGATGTGTTTTCTAACTTTGCCTGCTCTGATCAGG GAATAGTCAGAGGAAAGCTGGATCAGTTGCGGCGATGCTTTGAGGTCCTACCTCATTATCTTTTTTTTCCCTCTTTTACT TGCAGTTTGAACCCTTTCTATTTTTTCTTGTAATGAGACCTCTAGTAGGAATTGATCTGATCATTGAGGGGGATTTTAGG TCCAATTTGCAGCAGGTAGGGACTTGAGGCCCGGTCAATTGGGAAGTATGATACAGACACTCTCTAACTGGTAATCTATC TTTTGTCAAGTAGGGGCTTGTGATTATTAGTAAATTAATTATCTATGTTGAAACAATATTTGGAATTTCCTTGAATGACG ATAAACATGTTGATATCTCTATAAACTTGGTATTTCTTTGCTTCACTACTTCAAAGCTTTGCATTTTTAGACAGTGACCA CTTTTGGGAATAGTCTATATTTATATCTATTTAGCTTCTGATCTTGGTTGAAGTTGATTTGAACATTCGATTGTCAACTT GCCTCAATTTGTTGTGTATTAGATCTTCTGTTTGTTAAATTTTTGTTTTGCAATTCTTTGGTTCAAGACTCATTGTGGTG TTCGTATAGACAATGCTAACTTTATGGGGTGTGATGTATGAGGCTTCTCTCCATAATGCTAAAATTTAATTCATGACTTG GAAACAGGTTGTCTACATCAGAAAATTTGCTTGTTTCAATTCAAGAGAAGATAAAATGGGCTGATGCTATGAGTGAAGTT GACAAGAAGCACAGGAAGGATGTGGAGGAGAAGGTAGAAGAAGTGAAGAAGTCTCTCTTCAAGGTCGGTTGGATTTATTT TTTACATCATTTTTTCTTTTCAATACAAATGAAAAAGTGCCACATAAAAATGCTCGCATGTAATTTTGATCTTGTATAGA TTTTCTCCTTTATGTTTCTCTTTGTTGAGATTATGTGTGAGATTGTGTACGATCTGATTACTTGTGATTTGAGAGCGTCG ACCACTCATCCTCCTCTTCCACCTCTGTGTGCCTGACTTAGCCCTCCATGACCTGCAAAATTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0496000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATATCGAGCAGAAGCAATCGGAGCTCATCGACAACTTCGTGAAGCAAGCCTCTGCTGCACCCAACGCTCCTGCACT CGCTTCCGTCGTCATCGAAGCCACTTCTCACCCATCCCTCTTCGCTTTCGCCGAGATCCTTGCCCTCCCTAATATTCTAC AGCTTGAAGGAACTGAGAATTCTGCGCACCTTGATCTGCTACGGTTGTTTGCCCATGGAACATGGAGTGATTACAAGAGT AATGCTGATCGTCTTCCGCAGTTGTTACCTGATCAGATCCTCAAGCTTAAGCAACTCACAGTTCTTACATTGGCTGAGAC AAACAAGGTACTACCCTATGACCAACTGATGCAGGACTTAGATGTGACGAATGTTCGTGAACTTGAAGATTTTCTAATCA ATGAATGCATGTATGCGGGAATAGTCAGAGGAAAGCTGGATCAGTTGCGGCGATGCTTTGAGGTCCAATTTGCAGCAGGT AGGGACTTGAGGCCCGGTCAATTGGGAAGTATGATACAGACACTCTCTAACTGGTTGTCTACATCAGAAAATTTGCTTGT TTCAATTCAAGAGAAGATAAAATGGGCTGATGCTATGAGTGAAGTTGACAAGAAGCACAGGAAGGATGTGGAGGAGAAGG TAGAAGAAGTGAAGAAGTCTCTCTTCAAGAGCGTCGACCACTCATCCTCCTCTTCCACCTCTGTGTGCCTGACTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0496000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDIEQKQSELIDNFVKQASAAPNAPALASVVIEATSHPSLFAFAEILALPNILQLEGTENSAHLDLLRLFAHGTWSDYKS NADRLPQLLPDQILKLKQLTVLTLAETNKVLPYDQLMQDLDVTNVRELEDFLINECMYAGIVRGKLDQLRRCFEVQFAAG RDLRPGQLGSMIQTLSNWLSTSENLLVSIQEKIKWADAMSEVDKKHRKDVEEKVEEVKKSLFKSVDHSSSSSTSVCLT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.25.40.570
1 170 170 1.8E-68 –
PANTHER
PTHR15350:SF11
1 222 222 3.6E-103 –
PANTHER
PTHR15350
1 222 222 3.6E-103 –
ProSiteProfiles
PS50250
1 160 160 20.361
IPR000717
SMART
SM00753
87 178 92 1.0E-17 –
SMART
SM00088
87 178 92 1.0E-17
IPR000717
Pfam
PF18392
169 215 47 4.2E-6
IPR041481

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008180
Cellular component COP9 signalosome A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome.
Subterm of
GO:0010387
Biological process COP9 signalosome assembly The aggregation, arrangement and bonding together of a set of components to form a COP9 signalosome.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0496000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…