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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0496200 |
| Transcript ID | LotjaGi1g1v0496200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT2G44840.1 ethylene-responsive element binding factor 13; Swiss-Prot: sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1; TrEMBL-Plants: tr|A0A072U149|A0A072U149_MEDTR AP2-domain DNA-binding protein; Found in the gene: LotjaGi1g1v0496200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101114004..101115135) extracted from Lotus japonicus Gifu genome v1.2.
AGGCAATAACGTATACCACGTTGTATCAGGTCAATTTTCGAATAGAACGACTATATAAATACATGCCTCTTTGCTTTGTA CAAACATCAAATCTCATAATTCCAAAAGAGAAACCCCATCATCAACTTTTTGCAACCAAAACATGTCATCCACCACCATG GATTCAGATCAGTTTGCATCTCTAGAACATATTCAACAATACCTCTTTCTTGACAACGATTCAAGCCCTATGACCTCACC TCAAGCTATTGAAAGCCCTAGTTCTGATCCAAATGCGCTCTCTTTCGACAAGCCCGATGCGGCAGAGCGTGAGCCTAACG CGCCTCCGGCATGGAGGCACTACAGAGGCGTGAGGCGCAGGCCGTGGGGTAAGTTTGCGGCAGAGACCAGAGATCCAAAG AAGAACGGTGCTAGGGTTTGGCTTGGAACTTATGTGACTGAGGAGGAAGCAGCTATAGCTTACGATAAAGCTGCTTTCAA GATGCGTGGCCGGAAGGCCAAGCTGAACTTCCCCCACCTCATCTGCTCTTCTGAGCCGGTGAGGGAGGTGGTTGTGAAGC GGTGCTCACCAGAGCCAACAGAGCTTTCTCCACCGGTGTCACCTTTATCGGAGGATAGTTGTGAGTCACAAGGGTCAAAG AAGAGAAGGACCATGGTTGATCTGCTAAATAAGTTAGCCAAGAATAGAGGTCAAGTCAAGGCATTTGAAATGGCCTCGCA GGAAAATGTTGTTGAACAATGGGTGAACGAGTTGAGTGATTGTAGTGTTTTTTAGTTTTTTTTTTTTTAGTTTTTTTTGT TTGTGCAGTTCCTCATGAGGCTGTAGGTTTTTGCTGTGAGTGATGAACTTAGTTCCTCATAAGCTTGAAATGATTTTTGC ATGACCCTGGCTGAGTGGATCATGTTTGCTATGAAATGTCCAAGCATAAATAAAACTATGACAATGTTGTAATTTTTCGA ATGGCTAGAACATTTGTATCTGAGTACTGACTACTGATGTGTTATTAGTTGAAAAATAGGACATTTAGGGTGTAATTTTT TTTTCTCGTGGTTCAAACTTGATCCAAAGACCATATATCCATAATCCATTCTTACATAAAATGTTCGGATGATGAATGTA AATATACTCCCA
CDS sequence (LotjaGi1g1v0496200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCCACCACCATGGATTCAGATCAGTTTGCATCTCTAGAACATATTCAACAATACCTCTTTCTTGACAACGATTC AAGCCCTATGACCTCACCTCAAGCTATTGAAAGCCCTAGTTCTGATCCAAATGCGCTCTCTTTCGACAAGCCCGATGCGG CAGAGCGTGAGCCTAACGCGCCTCCGGCATGGAGGCACTACAGAGGCGTGAGGCGCAGGCCGTGGGGTAAGTTTGCGGCA GAGACCAGAGATCCAAAGAAGAACGGTGCTAGGGTTTGGCTTGGAACTTATGTGACTGAGGAGGAAGCAGCTATAGCTTA CGATAAAGCTGCTTTCAAGATGCGTGGCCGGAAGGCCAAGCTGAACTTCCCCCACCTCATCTGCTCTTCTGAGCCGGTGA GGGAGGTGGTTGTGAAGCGGTGCTCACCAGAGCCAACAGAGCTTTCTCCACCGGTGTCACCTTTATCGGAGGATAGTTGT GAGTCACAAGGGTCAAAGAAGAGAAGGACCATGGTTGATCTGCTAAATAAGTTAGCCAAGAATAGAGGTCAAGTCAAGGC ATTTGAAATGGCCTCGCAGGAAAATGTTGTTGAACAATGGGTGAACGAGTTGAGTGATTGTAGTGTTTTTTAG
Protein sequence (LotjaGi1g1v0496200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTTMDSDQFASLEHIQQYLFLDNDSSPMTSPQAIESPSSDPNALSFDKPDAAEREPNAPPAWRHYRGVRRRPWGKFAA ETRDPKKNGARVWLGTYVTEEEAAIAYDKAAFKMRGRKAKLNFPHLICSSEPVREVVVKRCSPEPTELSPPVSPLSEDSC ESQGSKKRRTMVDLLNKLAKNRGQVKAFEMASQENVVEQWVNELSDCSVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 24 | 62 | 39 | - | – | |
| MobiDBLite | 24 | 45 | 22 | - | – | |
| PANTHER | 45 | 181 | 137 | 7.6E-53 | – | |
| PANTHER | 45 | 181 | 137 | 7.6E-53 | – | |
| Gene3D | 65 | 126 | 62 | 1.4E-30 | ||
| Pfam | 66 | 116 | 51 | 9.2E-13 | ||
| ProSiteProfiles | 66 | 124 | 59 | 23.657 | ||
| SMART | 66 | 130 | 65 | 5.3E-36 | ||
| SUPERFAMILY | 66 | 125 | 60 | 3.4E-22 | ||
| CDD | 66 | 126 | 61 | 4.64923E-31 | ||
| PRINTS | 67 | 78 | 12 | 1.7E-13 | ||
| PRINTS | 106 | 126 | 21 | 1.7E-13 | ||
| MobiDBLite | 143 | 167 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0496200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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