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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0498100 |
Transcript ID | LotjaGi1g1v0498100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Mitochondrial outer membrane protein porin; TAIR: AT3G01280.1 voltage dependent anion channel 1; Swiss-Prot: sp|P42054|VDAC_PEA Outer plastidial membrane protein porin; TrEMBL-Plants: tr|Q6W2J5|Q6W2J5_LOTJA VDAC1.1; Found in the gene: LotjaGi1g1v0498100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101397328..101402772) extracted from Lotus japonicus Gifu genome v1.2.
CTCAGAATTTGTTTAAATTGGTGAAAGACGAGTCTCTGAGATTTCATTTCACATCACACAGCGAGCTTCTTCACCCTCTT CTCTCTTCTCACTCTCTCGATTCCCATTTCCTCTCCTTCACCGCCATGGCTAAGGGTCCTGGTCTCTACACTGACATCGG CAAGAAAGCCAGGGGTACCCTCTCTCTCTCTCTCTATGCTTTTCTTGTTTTCGAATTTTGGATTCAATTTTCATTTCTTT GTTGATTCGTTATTCTCTGTGTTCAATTGATTCTGATGAAATTTGTAATCGGGTTTTGCTTTGTTTGTTGTAGATCTGCT GTTCAAGGATTACCACAGTGACCAGAAGTTCACCATCACCACCTTCTCACCCACTGGAGTTGTGAGTTATTTTTTGTTTG AAATTTTGCAGCACAATGCATGAAATGGGTATTTGTTTTACCGTTGTGTTTTGTTGTTCGATGCTCTGTGTTTTTTTGTG TGGATCATAATGCTGGAAGGTTTCTGTGCTCTCCATATGTATCTGTCTGATTTTGTGGGTGCGTATTATGACAACAAACT ATGTTTTGGCCTTATGGGTCTTCTCCATTCAACTGCAAAATGTTGCATTTGCTTGTTTATGAGACACCGGCTTTTAGCTC GAAGCTTTTACAGTGGTATTTTGATTAGATGCGTCTTTTAATGATCATCCATATAAGTATATCCTGAATTTTAAATTGAA AACGTGGCTTATGTTGTTTCCGATGCTTCTTCGCTTATTGTTTTATTGTGGGTTTATGTTTTACTGCTGCCTTTATTTTC TGTCTGTCTTCAATCTTGTCATTTACGGTTTGGATTCAGTGTCCCTCTTTAAGCTGCATGATGAGAATTACCATTATGCG GCAATTGAATTTTTATATGTATACAAGATACTATTAAATTTTGATTTATATTTTCGCCATTTTTTAATTCAGTTATCCTA ATGTACTTTAATTTAACCTTTTTTCCTTAGATTTGGAAACCGCTTGTATATACTTGCTGTTGTGTATTCTTGTCAATGCT CGATAGAGCACCCACATTGCATCAAAGTAGAGAAGAGCTTAATTGCTCTCAGGCGCTCTTGGTGCTGGGGTGCTCCGATT CTCCAAATGGCTGTTATAGCCTATTTATTACCCCTATGCTATATAGGGGTGGAATTTGTAAATTTAACCCAATTAAATTC CTCTTTGCAGCATAAAATTAGGTCTTATAGGTCTTGTTTATTATTTTTATGAAGTTTTCAATGTAGTGCAGCCAACCAGC TTTCTTCTAAGGGTTTTGATTTCATCTGCTTGACCCCTCCGTCTTGCACCCAACTATCCTTCCCCATGACTCATCTATCT TTTTTACACTATGCATCTCTGTTCTACACTTGTACTGTGGCTTCCATCTGCTTTGCCAGCAGTTATTTTTGTGACAGCCT CTATAGCTTCACCAAGCATCTATTATTCTATTTTATTGCTGTTGTCTTGTTGTCCATCCAAGTTTCCATTGACAGCTTTG CAAAAGGAAAAAAAACATCACCATTCCCTTTTCTCTTTGGTATTTTCCTGCCTGTGTGTTTGTTTATTGTAATTAATGTT ATTGTTCATCTCTTCAAATCACTGGCTTTTCTATTACATATTTTTTTTGTTTCTTTATGCTTGATAGTCATCTATTATTG TAAATTTGTAATGTAACTTTTATGTGACACTTCGACACATTTAACTGATAAAGGCTTCTTTAATTGAGTTTAAAATCCTT TATTGTGATGGTATAAAGTTTTTAAACTATCAGTATTATAAAGTGTGTGTATTTATCAAATGTTTATAGTTTTTCCATTG TTGTCGCTATCATTGTTCTCTTGGATACTTGGGATCCGCTATGTCATCGCCATAGCATTTTTATGTGTGATCTTAGGCCC CGTGTCTTGGCGCAAGCTACTTTGGATGCTATTTATTGTATTAAGTGTTAACATTCAGTCTGAACTTAGAACATTGTAGC AAATGCATAGTAAAATGGATTTTAACATGTAACCAACCTTCATTGTATGCTATGCTAATGGAAGCCTAGTTCAAGTGGAT GGAGGTTGATGCAAATTACAGCATCAGTTGCAAATGCATTTAACCTAATCATGTAGGATCCCTATGATAAAATTGACATC CATGGTTCAAGTACCATTTTAACTTCTTTTACGCTATTAATGTATTATACTCTTATGTTTGTGTCTTCTGCTGCAGGCTA TAACTTCATCAGGAACCAAGAAAGGTGAACTGTTTGTGGCTGATGTTAACACCCAGTTGAAGAACAAAAACATCACAACT GATATCAAAGTTGATACAGATTCCAATGTAAGTAACATCTTGTTTGGAAATTTGTTATTCTCTGATCTTAGCTTCACTTT GATTTATACTACTTGTTTCTGTTTTATGTCCACTGTGAAGAAATATTAAACCAATTTTTGTTATTGAGTTTTGTTTTACT ACCCTTGGATGATGTGTTTCCAAAAGATTCAATTTGTTGGTTAATCATATTTTATAGATGGCATATGAAATTGTTCTCTC CAACAATGAGTGGATTTTTAGAGAAATCCCTTTCAGTGTCCAACTGTTTACACTCTCAGTTTTCAAGTCTAGCATAGCCA AGATGTCCACATTAATTTATGTGCATTTATGTATTTATTTAAGGCAAAATGTCATCCTACCTGTACACCAGGTTGAATAA ATGTACTATCAAAATTTTCAAACATCAAGTTACAGATTGTCCACCCTAATTATTTTAGGTAAAAAATCTCAAAGCAAATT GATAAATTAATGAAGGGTAAATTGTTTATAACTATGATTAATGATTTCTTAGTTGTCTGGCTAAGATTGAGTATGAGGTG TCTTATGGTTACATGTATGTTGAGGTTGAAGGGTGTTTCTACATGCTTCATCTTTTATTATGTCTTTCTTTCTGTATGCA AACAACCTTTATTCATTTGGTATATAGGAGCTTGTTTGTATGTTCATTATAGATTCTGTGAGCATAGGTGGGTAAGGGAC TACCATGGTCTGGTGCATGTGTGCTTATTGACTATTGGCATTCTGGATTTACTTAAATATATCCTATACACCCATGCTTA TACATATCATACATAAGCAATAGAGAGTTGAATGTGTTTGTTGATAGTTGAGGAATTTGATATGTTCATGTCTTGCATCT TAATCAGTTTTTCTATACATTTAAAACCACCCCAGCACAATATCATTGGGAAATGTAAACCAAAATCTTATACTTGTCGC AGTTAATGCTAGTTAATGTTCAATTTGATTTTATCTTAACTTTCTCTGTCCTGTTTATGACTTTTATATTCCTATTTCCT ATGATGGTTTCACTAAAGTTGATTAATGCTTGTGCAATTCAGCTCTTCACAACTATCGCTGTCAATGACCCTGCTCCTGG TCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGATCAAAGGTCTGGAAAGGTAAGATACTCAATCATTTCACATGACAAGC TTTCAAAATCTAAAGAAAATGCAGTTGGTATATAAGGTCTTTGAGAAGGCCACCTAGTTAAAATTGTCTAAAACGTTGAG ACTGAAGATATTGCATCTTAGTCCTTCATGGCAGTAATTTGTGTTACCTGTTTTGTGGAACAGGTGGAGCTTCAATACTT GCATGACTATGCTGGTATAAGCAGCAGCATTGGGCTGACAGCAAACCCAATTGTTAACTTCTCTGGGGTTATAGGAACTA ACGTTCTTGCTCTTGGTGCTGATCTCACTTTTGATACCAAGATTGGGGAATTAACAAAATCTAATGCTGGACTCAGCTTC ACCAAAGATGACTTGATTGCAGCATTGACTCTGTGAGTAATTGTTCATCTGGGCGTATTTCTAGTTAAATCTGCGTTTAC TTCTCTACAACATGAATATTAGCCATTACATGTGGGGAGCTATGGATTTTCTAAGTTAGTCTGTTTAAAATGAATGATGA ATATTGAGCTTGTTTTGCTTGCAAATCTAGAAAAGTAATGTGTGCTTTTTATGGTTCAAGGTGCAAGTGTTTTTCTTCTA TTGTTTTTGCTATTTTTTCCTTTTTCATATTATTCCATTGCTATCCCTTGAGGTTTATGCATGTACTGATTGTTATTTGC TAGTACGAGTTTTATATGTTTTGTGATGTGGTTGAGTTCTTGTGTGCAGGAATGACAAAGGTGATGCGCTGAATGCTTCA TATTACCATGTTGTTAGCCCCTTGACCAACACTGCTGTTGGGGCTGAGGTGACCCACAGGTTCTCAACTAATGAGAACAC CCTCACCCTTGGCACCCAGCATGCATTGGACCCATTGACCACATTGAAAGCTCGTGTCAACAACTTCGGCAAGGCAAGTG CTCTCATCCAGCACGAGTGGCGCCCTAAGTCATTCTTTACCATCTCTGGGGAGGTAGACACCAAGGCCATTGAAAAGAGT GCTAAGGTTGGATTGGCTTTGGCTCTCAAACCCTGATAATTTTGATCCTTGGCAAGACATTGGGTTAGGCTTTTAGGAAG CATAGTTTGTCAGACTATTATTTTCTTCAAGTTGGTTCTCTTCTTGGCTAAGAAGTGTTCATGGTGTTTTCTTGGTTGAG CGATTCAACTTTGTAGCCATAATAAGTACCCAAATGTTACTTCTAAATGCCCACAAGTTCAGCAAGCCTCTTTCATTGAG CTGAGGGCTGGTACCTTTTTTGAGGTTTTGACATGCGGATTTTATGCCTTCTGATTTGATGGTTATTTTTTGCAATATTC CTTTGCATGGTTTCTTCTGATATGATGGCTTTTGATATACCCTTATATTTGATTTGGCTTCTCTAAAGTAAGGGAGTTAC TTAGAGGGTAAAATAAGCTATTATAACTGTTACTTGAGAATTAAACAGTTGAGATTGTAATCATATATTTGCTCATGTAT AGCTATGATGATAGTTAAATCTCAATCATTATTTTCTCAATCAACGGGTGCAATGATCTGCTTTACTCTTCAAAGTGACT CTTTAGGAGTCCAATCTACATACATCCCATTGCACTTCAGGACTTGGAAGCAGTGGCCGTTAAATATTAGGGTATTAGAG TAATCTTTATCTTTGTTGTAGTGGCCAGTTTGTGGTGTGAAGCTATAAATGATATAATTTTTGTTTCAGATTTTTATCGC TAACTATCCCTGGATTCTTAATCCTCATAGTACAAACTTTCCATACTCCTCTAGTCCTCTGCATCAAAACTTGGTTTTTT TTTGTTAACGATCAAAACGTGGTCTGTATCGTCTTCTGGACCTCTTTTTACACTAGGATGTGGGCCTACTGCCCTATCTA TTTGCATCTTCGATAACTTTGTTGATATTGGCTTTATGTTTGTTTTGTATGTTCATTTTTATCAAATCTTGTGCAACGAA TCCCG
CDS sequence (LotjaGi1g1v0498100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAAGGGTCCTGGTCTCTACACTGACATCGGCAAGAAAGCCAGGGATCTGCTGTTCAAGGATTACCACAGTGACCA GAAGTTCACCATCACCACCTTCTCACCCACTGGAGTTGCTATAACTTCATCAGGAACCAAGAAAGGTGAACTGTTTGTGG CTGATGTTAACACCCAGTTGAAGAACAAAAACATCACAACTGATATCAAAGTTGATACAGATTCCAATCTCTTCACAACT ATCGCTGTCAATGACCCTGCTCCTGGTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGATCAAAGGTCTGGAAAGGTGGA GCTTCAATACTTGCATGACTATGCTGGTATAAGCAGCAGCATTGGGCTGACAGCAAACCCAATTGTTAACTTCTCTGGGG TTATAGGAACTAACGTTCTTGCTCTTGGTGCTGATCTCACTTTTGATACCAAGATTGGGGAATTAACAAAATCTAATGCT GGACTCAGCTTCACCAAAGATGACTTGATTGCAGCATTGACTCTGAATGACAAAGGTGATGCGCTGAATGCTTCATATTA CCATGTTGTTAGCCCCTTGACCAACACTGCTGTTGGGGCTGAGGTGACCCACAGGTTCTCAACTAATGAGAACACCCTCA CCCTTGGCACCCAGCATGCATTGGACCCATTGACCACATTGAAAGCTCGTGTCAACAACTTCGGCAAGGCAAGTGCTCTC ATCCAGCACGAGTGGCGCCCTAAGTCATTCTTTACCATCTCTGGGGAGGTAGACACCAAGGCCATTGAAAAGAGTGCTAA GGTTGGATTGGCTTTGGCTCTCAAACCCTGA
Protein sequence (LotjaGi1g1v0498100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQLKNKNITTDIKVDTDSNLFTT IAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSSIGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNA GLSFTKDDLIAALTLNDKGDALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL IQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 276 | 276 | 7.1E-177 | – | |
PANTHER | 1 | 276 | 276 | 7.1E-177 | ||
Gene3D | 3 | 276 | 274 | 4.3E-71 | ||
CDD | 5 | 275 | 271 | 4.64541E-94 | – | |
Pfam | 5 | 269 | 265 | 3.2E-75 | ||
ProSitePatterns | 219 | 241 | 23 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Mitochondrial outer membrane | The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope. | ||
Molecular function | Voltage-gated anion channel activity | Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
Biological process | Anion transmembrane transport | The process in which an anion is transported across a membrane. |
Expression pattern of LotjaGi1g1v0498100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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