Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001925
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.608s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0086299.1
n.a. VDAC1.3 [Lotus japonicus] gi|36957198|gb|AAQ87021.1| chr0 34800971 34803663 +
2 domain predictions
3 GO terms
Lj0g3v0086309.1
n.a. VDAC1.3 [Lotus japonicus] gi|36957198|gb|AAQ87021.1| chr0 34801403 34803629 +
2 domain predictions
3 GO terms
Lj1g3v2942100.1
n.a. VDAC1.1 [Lotus japonicus] gi|36957170|gb|AAQ87019.1| chr1 33423635 33428372 -
2 domain predictions
3 GO terms
Lj1g3v2942110.1
n.a. n.a. chr1 33423821 33428448 -
2 domain predictions
3 GO terms
Lj2g3v1034580.1
n.a. VDAC1.2 [Lotus japonicus] gi|36957183|gb|AAQ87020.1| chr2 16536161 16538878 -
2 domain predictions
3 GO terms
Lj2g3v1034590.1
n.a. n.a. chr2 16536189 16539018 -
2 domain predictions
3 GO terms
LotjaGi1g1v0498100.1
n.a. Mitochondrial outer membrane protein porin; TAIR: AT3G01280.1 voltage dependent anion channel 1; Swiss-Prot: sp|P42054|VDAC_PEA Outer plastidial membrane protein porin; TrEMBL-Plants: tr|Q6W2J5|Q6W2J5_LOTJA VDAC1.1; Found in the gene: LotjaGi1g1v0498100 LjG1.1_chr1 101397328 101402772 -
3 domain predictions
3 GO terms
LotjaGi2g1v0256500.1
n.a. Mitochondrial outer membrane protein porin; TAIR: AT3G01280.1 voltage dependent anion channel 1; Swiss-Prot: sp|P42054|VDAC_PEA Outer plastidial membrane protein porin; TrEMBL-Plants: tr|Q6W2J4|Q6W2J4_LOTJA VDAC1.2; Found in the gene: LotjaGi2g1v0256500 LjG1.1_chr2 72284800 72288166 -
3 domain predictions
3 GO terms
LotjaGi2g1v0409200.1
n.a. Outer mitochondrial membrane protein porin; TAIR: AT5G67500.3 voltage dependent anion channel 2; Swiss-Prot: sp|Q9FJX3|VDAC2_ARATH Mitochondrial outer membrane protein porin 2; TrEMBL-Plants: tr|Q6W2J2|Q6W2J2_LOTJA VDAC2.1; Found in the gene: LotjaGi2g1v0409200 LjG1.1_chr2 90627590 90632285 +
2 domain predictions
3 GO terms
LotjaGi4g1v0185600.1
n.a. Mitochondrial outer membrane protein porin; TAIR: AT3G01280.1 voltage dependent anion channel 1; Swiss-Prot: sp|P42056|VDAC2_SOLTU Mitochondrial outer membrane protein porin of 36 kDa; TrEMBL-Plants: tr|Q6W2J3|Q6W2J3_LOTJA VDAC1.3; Found in the gene: LotjaGi4g1v0185600 LjG1.1_chr4 41083578 41086662 -
3 domain predictions
3 GO terms
LotjaGi4g1v0246600.1
n.a. Mitochondrial outer membrane protein porin; TAIR: AT3G01280.1 voltage dependent anion channel 1; Swiss-Prot: sp|Q9SRH5|VDAC1_ARATH Mitochondrial outer membrane protein porin 1; TrEMBL-Plants: tr|A0A0L9TRN9|A0A0L9TRN9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0246600 LjG1.1_chr4 59808457 59811643 -
2 domain predictions
3 GO terms
LotjaGi4g1v0299800.1
n.a. Outer mitochondrial membrane protein porin; TAIR: AT5G57490.1 voltage dependent anion channel 4; Swiss-Prot: sp|Q10S27|VDAC6_ORYSJ Mitochondrial outer membrane protein porin 6; TrEMBL-Plants: tr|Q6W2J1|Q6W2J1_LOTJA VDAC3.1; Found in the gene: LotjaGi4g1v0299800 LjG1.1_chr4 67383723 67390496 +
2 domain predictions
3 GO terms
LotjaGi5g1v0033000.1
n.a. Outer mitochondrial membrane protein porin; TAIR: AT5G67500.3 voltage dependent anion channel 2; Swiss-Prot: sp|Q9FJX3|VDAC2_ARATH Mitochondrial outer membrane protein porin 2; TrEMBL-Plants: tr|I3SIM2|I3SIM2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0033000 LjG1.1_chr5 5431044 5433324 -
3 domain predictions
3 GO terms