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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0502600 |
| Transcript ID | LotjaGi1g1v0502600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger-homeodomain protein 1; TAIR: AT5G15210.1 homeobox protein 30; Swiss-Prot: sp|Q9LXG0|ZHD8_ARATH Zinc-finger homeodomain protein 8; TrEMBL-Plants: tr|A2Q1B8|A2Q1B8_MEDTR Homeobox domain, ZF-HD class protein; Found in the gene: LotjaGi1g1v0502600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102014925..102016820) extracted from Lotus japonicus Gifu genome v1.2.
CAGTCCTCAAGGCTCAAACAAACCTCACCAACAACATCTTCCTAGTTTCTCCTCTCTCATTCATTCTCTCCCTTCATTTT CCCCTCTTCTCCTTCTCTTCCACCGAAGTAAACCCTTCACCTTTTTTTCACTGAACCCCAAATCCCATCTTAATTTTATA AAACAGTGGTTTCAGTTGCTGCAGGTAGTAGACGAGGTTCAAACTTCAATTTCTGCTGCAACAATTTCCTAACCCTAGTA GAAAACCCATAAAAAGCTAAGCTTTTCTTTTCTTCTTTGTTTATCATTTTTTATTATTATCTTAAATATTTTTATCCAGC ACCCCTTGATGTTTGAGCCATGGACATAACCCCAACAACAACGATCATCACCAACATCAACAACACTGCAACACCAACAA CAACAATTGCAATTGCTGCAGCAGCAACTTCATCAAAATCCCCAGAGCATGAAACTGAGACACCACCCAGGATTGCTAAC ACCACCACCCCACCACCAACAAAGGCTTTGTCTTTTTCCAACGGTGTTCTCAAACGCCACCACCCCTCTTCCTACCACCA CCACCACCACCACCCCCTTTCTGCTAATCACACCACCATGGCGGTTGCTTACAAAGAATGCCTCAAAAACCACGCCGCCA ATTTAGGCGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGCCGGCACCTTCCGCCACCGCCGCCGACCCCAGCTCGCTA AAATGCGCTGCCTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGCCGGAAGAGCCGCCAATCTCCACCGCTGTGATTGA GTACCAGCCCCACCACCGCCACCACCCTCCTCCGCCGCCGTCGTTCCAGCCTTCCAGCCGCAGCCCAAATTCAGCTTCTC CTCCTCCGATCTCGTCCTCCTACTACCCCTCCGCACCCCACATGCTCCTCGCCCTCTCCACCGGACTGGCGGCGCCGCCG GAGAACGCTGCGGGCCCCACCTCGTCCTCAAGGAAGCGTTTCAGGACCAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCT GAAATTCGCTGAGAGAGTTGGGTGGAAAATGCAGAAGAAGGACGAGGATTTTGTTCAGGATTTCTGCAACGAGATTGGAA TTGAAAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAGAACACTTTTGGGAAGAGAGATGGTAGCAACGAAATCAAC AACAACAACATCAACAACAATATCAACAATGCTGGTTCTGCTAAGAGTTTTTTTGCAAAGGAAAATCATGACCCTGTTAT CACCAACATTAACAGCGCCTCTGAAATCAATGGCAATGGAAATCGCAACCATGGTGCTGAGGATCCAATTCATCATCACT ACCAGAACGATGGTGGAGCAACAGTTCGTGCTAATGGGTCATCTTCATCTTGAATCTTGATCGATCTTTCATGGGGAAGA ACAAAAATGATGATGATAATAACATGTTTAGAACATTAGATTAAGGATGGTACCAGTTTAGTTTAATTAGTGGTTTAATT TTTACCTTTCTTCTTTATTCTCTCTGGTCTTTAATTGTTAGTTTATATTATGGATGAGATTATGATGATGATGAGAGATT AGTCATGAATGATATCCTGTAGGAAATTTATTTTATTTTCAGTGATCATGCTTTTTTCTTTCTTTCATGTTTTATGCTTA ATAGTATGTTTAGAAACTAGTATAAAAACCAATGTGAAATTAAAATCCCTAACGATAGGTTCTCTTAGCTTTGCATGTGT ACAATTTGTCAGAAATCTCACGTTGATTAGAAGTACAGTTAAATTAGTGTTTATCAAAGCTAGATCAATTCTTACTCTAA GCTTGGTGGAGAGTTAAAAGGTGACTTAAAATCTAAGAGAATTAATTGATTATTTA
CDS sequence (LotjaGi1g1v0502600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATAACCCCAACAACAACGATCATCACCAACATCAACAACACTGCAACACCAACAACAACAATTGCAATTGCTGC AGCAGCAACTTCATCAAAATCCCCAGAGCATGAAACTGAGACACCACCCAGGATTGCTAACACCACCACCCCACCACCAA CAAAGGCTTTGTCTTTTTCCAACGGTGTTCTCAAACGCCACCACCCCTCTTCCTACCACCACCACCACCACCACCCCCTT TCTGCTAATCACACCACCATGGCGGTTGCTTACAAAGAATGCCTCAAAAACCACGCCGCCAATTTAGGCGGCCACGCGCT CGACGGCTGCGGCGAGTTCATGCCGGCACCTTCCGCCACCGCCGCCGACCCCAGCTCGCTAAAATGCGCTGCCTGCGGCT GCCACCGGAATTTCCACCGCCGTGAGCCGGAAGAGCCGCCAATCTCCACCGCTGTGATTGAGTACCAGCCCCACCACCGC CACCACCCTCCTCCGCCGCCGTCGTTCCAGCCTTCCAGCCGCAGCCCAAATTCAGCTTCTCCTCCTCCGATCTCGTCCTC CTACTACCCCTCCGCACCCCACATGCTCCTCGCCCTCTCCACCGGACTGGCGGCGCCGCCGGAGAACGCTGCGGGCCCCA CCTCGTCCTCAAGGAAGCGTTTCAGGACCAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCTGAAATTCGCTGAGAGAGTT GGGTGGAAAATGCAGAAGAAGGACGAGGATTTTGTTCAGGATTTCTGCAACGAGATTGGAATTGAAAGAGGGGTTCTCAA AGTTTGGATGCATAACAACAAGAACACTTTTGGGAAGAGAGATGGTAGCAACGAAATCAACAACAACAACATCAACAACA ATATCAACAATGCTGGTTCTGCTAAGAGTTTTTTTGCAAAGGAAAATCATGACCCTGTTATCACCAACATTAACAGCGCC TCTGAAATCAATGGCAATGGAAATCGCAACCATGGTGCTGAGGATCCAATTCATCATCACTACCAGAACGATGGTGGAGC AACAGTTCGTGCTAATGGGTCATCTTCATCTTGA
Protein sequence (LotjaGi1g1v0502600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDITPTTTIITNINNTATPTTTIAIAAAATSSKSPEHETETPPRIANTTTPPPTKALSFSNGVLKRHHPSSYHHHHHHPL SANHTTMAVAYKECLKNHAANLGGHALDGCGEFMPAPSATAADPSSLKCAACGCHRNFHRREPEEPPISTAVIEYQPHHR HHPPPPPSFQPSSRSPNSASPPPISSSYYPSAPHMLLALSTGLAAPPENAAGPTSSSRKRFRTKFSQEQKEKMLKFAERV GWKMQKKDEDFVQDFCNEIGIERGVLKVWMHNNKNTFGKRDGSNEINNNNINNNINNAGSAKSFFAKENHDPVITNINSA SEINGNGNRNHGAEDPIHHHYQNDGGATVRANGSSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 313 | 300 | 9.3E-109 | – | |
| PANTHER | 14 | 313 | 300 | 9.3E-109 | – | |
| MobiDBLite | 28 | 53 | 26 | - | – | |
| Pfam | 89 | 143 | 55 | 3.6E-28 | ||
| ProSiteProfiles | 91 | 142 | 52 | 27.12 | ||
| TIGRFAM | 91 | 142 | 52 | 3.0E-30 | ||
| MobiDBLite | 157 | 187 | 31 | - | – | |
| MobiDBLite | 162 | 178 | 17 | - | – | |
| MobiDBLite | 204 | 224 | 21 | - | – | |
| Gene3D | 206 | 278 | 73 | 5.5E-32 | – | |
| SUPERFAMILY | 208 | 279 | 72 | 8.51E-19 | ||
| TIGRFAM | 218 | 275 | 58 | 1.7E-26 | ||
| MobiDBLite | 323 | 357 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0502600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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