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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0502700 |
| Transcript ID | LotjaGi1g1v0502700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin-regulated family protein; TAIR: AT5G15230.1 GAST1 protein homolog 4; Swiss-Prot: sp|P46690|GASA4_ARATH Gibberellin-regulated protein 4; TrEMBL-Plants: tr|G7L0Z5|G7L0Z5_MEDTR Gibberellin-regulated family protein; Found in the gene: LotjaGi1g1v0502700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102048474..102050345) extracted from Lotus japonicus Gifu genome v1.2.
AATCGTGCCGGTACACGTGTCATGCCGTGGTTCTTCATAGTGAGGACAACACTCTGCTACCGAGCACACCTAATAAATGC TGCACCTAAATATCACACTGTGAAGGTTCTATAAATACCTCATGCCTCCTTTGTACTTCAAATCAAACCAACTATCTCCT CAAATATCCCTTTGTGATTTGGTTTTGGTTGAGTTTTGCCAAATCAGGAGGGCGTGTCTCTGCAATAATGGCCATGGCTA AGTTCTTTGCTGCTTTGATCTTGGCACTCATTGCCATTTCCATGCTTCAAACTTTGGTTAGTCTTTAATTTTAAAGATCA TAGCCACACACATTCACATAACACATTTTTTTTGTTAGAATTTAAGGGGTCTCTTACATTTGATTATGGTTTGGTTTTCA GGTCATGGCTGAAAATGGGAAAGGAGACTTGTATGATGAGAAGATGAAGGTATATACATTATCCCAACCCTCCTCTTCCC TTTCTCTTCCTGTGATCTCTTTTTGGGTTTATTTTTTCAGAATCAAGATGGGGTCTTGGAATTTTGGATTCTTAGGTGAA TATTATAATTGATGCTAACTTATGCTGTTTCTTTGTGTGTTTTTTCTCAGAGCCAATATGGACCCGGCAGTCTCAAGAGC TCCCGTAAGTAAAATTCATTATACTTTTCTTTTTGTTGCTCTTTTTGTTAGACTAGGTATATTTGGATACACAGTAAAAA ATGAGTTAAAATGGCGGACAAGCATTTATTCTTAGCTTTTTGTCCAGTTCACTGTAATTTTGGCTTTAATTAATGTAAAT TTTCAGTGTGTATTCAAATATATACTGAATCAATTTTAGTGAAAATTTTCCAGTAGTACTTTCTAGTAAATTTTCAAGTT AATTTTGAGAAAACCATTACAGATCTATAGTGTGAAGCATTGTAGAGTTTTCTCCTACTTTTGGACATGAAAATGGTGTA AACAATGAGATTGGAAGAAGGGACATTTTAAGAACTACGCAAAAAAGAAAGCAGATCATGGGTTAAATGTAAAGTACTTT TTATAAATGTTAAATTGAATATATTAAGGAGTACTGTGTTTTTTTTGTGTAAAAATTGTTTTTAGAACTTAGAAGGGACA CTTTCATTTTATTTTTATATAATTATGACCACAGTGTTTCAGTCAATTTTACTTCGACTTTGGTCAAAATTGCTTCCGTA AAAGCTGCTTTTCTGTTGGAGTGTTTGACTGGGATGTGTGAAAAAGAAATAATGACCATTGGTCACAGTGATGAGTTGAT AATGCTTGTTTATTAACTTTACTGGTTTGTCTGTTTTGGAATGTGAAATGACCAGAATGTCCATCACAATGCACGAGGAG ATGCGGTCAGACCCAATACCACAAGCCCTGCATGTTTTTCTGTCAGAAGTGCTGCAGGAAGTGCCTGTGTGTACCTCCGG GGTATTATGGGAACAAAGCTGTGTGCCCTTGCTACAACAACTGGAAGACCCAACAAGGAGGACCAAAGTGCCCTTGAGCT TCAACTTTTCCTCAAAAGTCATTTTTCTAATTATATGTTACAATTTCCATTCCTTGTGTTGCTTATTTACTTCTCTACTA TTTTGGTTCTATGAAAATGTCATGTTGTATTTTGGGATGCCCTTTTGTTGTTTATGGGCTCCATCTACTATATCACTCCT TTAGGCTTGTTTGCCTTTAATGTGAGTGGTCTATCAATGTGGTTGTTATCATCTATGGAACTTTTTTGTTGAGTAAACTT GTCTTGGTAAACCAATTATTACATGCTTCCTACTAGATGTAAATTTGTTATTTCGTAATGATGTGTTGAAATTATGCTCA TGAAAATTAATCAATAAAGTCTAGTACATTTA
CDS sequence (LotjaGi1g1v0502700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGGCTAAGTTCTTTGCTGCTTTGATCTTGGCACTCATTGCCATTTCCATGCTTCAAACTTTGGTCATGGCTGA AAATGGGAAAGGAGACTTGTATGATGAGAAGATGAAGAGCCAATATGGACCCGGCAGTCTCAAGAGCTCCCAATGTCCAT CACAATGCACGAGGAGATGCGGTCAGACCCAATACCACAAGCCCTGCATGTTTTTCTGTCAGAAGTGCTGCAGGAAGTGC CTGTGTGTACCTCCGGGGTATTATGGGAACAAAGCTGTGTGCCCTTGCTACAACAACTGGAAGACCCAACAAGGAGGACC AAAGTGCCCTTGA
Protein sequence (LotjaGi1g1v0502700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMAKFFAALILALIAISMLQTLVMAENGKGDLYDEKMKSQYGPGSLKSSQCPSQCTRRCGQTQYHKPCMFFCQKCCRKC LCVPPGYYGNKAVCPCYNNWKTQQGGPKCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| PANTHER | 2 | 110 | 109 | 4.4E-62 | – | |
| PANTHER | 2 | 110 | 109 | 4.4E-62 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 18 | 26 | 9 | - | – | |
| Phobius | 27 | 110 | 84 | - | – | |
| Pfam | 51 | 110 | 60 | 1.2E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0502700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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