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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0504600 |
| Transcript ID | LotjaGi1g1v0504600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT5G39660.1 cycling DOF factor 2; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|A0A151TC81|A0A151TC81_CAJCA Dof zinc finger protein DOF5.2; Found in the gene: LotjaGi1g1v0504600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102212088..102215910) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGGCTAAGGCCTAAGAAGAAGCAAAGGCAAAAAAAACAGAAAAAAAGTGAATGAGAAAAGGAAGTGAGAGAAAGAT CTTTATAGTAATTTTCAGGCCACAAACACAAAGAGAGATAGTTTGTGGCTGAAATTATAGGTAGCTTCTGATGTGGCACT CTCAACCTGCTTCACCGGATCAACAACAAAACGCACAATCTCACAACGTGTCCTTTCTCTCTCTCTCTGCACTTTTCTTC TATCTCTCTATCTCTCTCTTCACAACAACAACAACTTTTTACAGTTTATTGTTCTCTCTCTGTCTGTCTTTGGAAACAAA TCACAAAACAGCAATAAAGAGGTTTTTATCTGTTTTTAGAAAAACACACAAGACATGTCGGAGACAAGAGACCCTGCGAT CAAGCTATTTGGGAAGACGATTCCGCTGCCGGAGATTGCTGCCGGATCGGGATACTCCGCCGGGGATGAGAATCATGCTT CTTCCACCGACTCTTCCAGGGAGTCCCACACCAACAGGGTGGTTGCACAGAAGCAACAAGAGACTGTGAAGGTATGTGTG AATTTTGGGTTCATGAAATTTTGAATTTTGAGGGTGACCCATTATTTGGAATGTAAAATTATTTAATGGGTTGGTGTTAG TTTGGCTTGAGTGTTTAAGATTCTGTTTACTTGCTTTGGTGGCATGGCATGTATTGTATTGTGCTTCAGTGTTTAATTGG GGATTTGGGGTTAGTTTCAATTATCTGGGGGAGCTAGTTGATGTGCTAATTTCCAATTTCCAATTCTCATTTAGTACTTC AAGTGGTGTTTTGTTTTTTTTTTCCCATCCTTGACTTGCTGAAGCTTGACTTTTCTATGGCTTAGGAGAATCAGTGTCTA TTTGGATTAGCTTATTTTGGCTTGTAATCAAAAGCTTTGTGAGGGAAGTTTTGAGAAAAGGAAAAAGCAATTACTTCCTT TTATATATATAGGCATTTGGATTGAACTTCAGTTGCTGCAATATGGATTTATCAATATTTAAGGAATTAGTCTCTTTTAG TATGATTTTGTTTCAGCTCTCAAAACAGTGTTAATGCTTTACAGCATGAATATGGAAAGCTATAGAAAGTTAGAAGCTAA TCTATTTCTAATCGTTTTCTTTTTTTTTTCCCTTTCAATCTTTCTGATTCTTCTGGGGTATATTTTGTTTTGGTTTTTGA TGGGTGTCAACCCGTTCGTGATATTGTGGTTGTCCCTCCCAACAAATGACTTTCCTGGGTTTTAACTTGTGTACTCAGCA TGATTGTGAAAAGAAATGCTCTTTTTATTTGACTTCTCAGTTTTATATGGGTTTTGCCAAATCCTGAAAGAGAATTAAAA TCTGCCATAATACCATCTACAACATATTTGATATGCTTTTTCTTTTGATTTCCTTTTTTTCTCTTTTGTTTAGCTTTCTC GTAAAAGGAAGAATTGTTATGTTTTGTCTTGTAAAACTATCTCCTCTTGGTTTCTATACAATTCGTTTTTTCTGCATAAA TTCCTTTTTTGACAGATTTCATTATACTCCTTTCCCTTGGTTTGAGCCAGCAAATGTGCTAGCCTTAGATGGAAATATTT GAAGAATCAATGTCTTTATGAGAATTGAGTTAATATATTTGTGGATCAACACATCAAAAATGGGACTTTGACAGTTGAAG TTGCCGTAAGGATTCTAAACAACTGATGGAAAAATGAGGCTTCACTTATATTCAGTGATATATATAGTCTATTGTCAGTT TGTGTTGTGCTTTTCTCAACTTCTTATCTGTTCCTTCTGATGAAATAGCTTTGGGGGCGACATATTCACTTTTTTAACCT GTGTGTTTTTTTCATCAATGAAGAATTCTGTATTTTCTTTTCATGATATAAATGCAGGTCTTATATTAAACATTTAGTGC ATAACAACATACTTATCTCGGTTTGTCATGAATCCAGGACACATTGGGAGAAAACCCAACTGATATTAAGAAGGAAGATG GAGTCCCCATGCAATTGGCGAAGGAGATCACGAATACAGATACAACCTCTAGGACCGGTGAAGAAGCTGTTACCCTGTCC ACTGAGAGGGGGTCTACTACATTGAAAACTTCAAAGACTGAAGAAGGACAGAGCGAGACGAGTAATTCACAGGACAAGAA TCTCAAAAAACCAGACAAAATACTTCCTTGTCCCCGCTGTAATAGCATGGACACCAAGTTCTGCTACTATAATAATTACA ACGTCAACCAACCCCGACACTTCTGCAAGAATTGCCACAGATACTGGACTGCTGGTGGAACCATGAGGAATGTACCTATT GGTGCTGGTCGCAGAAAGAACAAGAACTCTTCTCCAATCAACCGCCCGATAACTGTCTCAGAAGCGATGCTGCAAAATAC TCGGACAGACTTGCCAAATGGAGCAGCCCATCATCCTTCCTTGAAGGTTAATGGTACTGTCCTTACATTTGGATCCAATA CACTTACATTTGGATCCAAAACACCCTTGTGCGAATCAATGACATCTGCTCTGAACCTTGCTGATAAATCCGTACCCAAT TACACAAGGAATGGATTTCATAGTTCTGAAGAACTAAGAATTCATGTTCCCCATGGCAGTGGAGAAAAGGGCGATGATCA ATCCAACAAGTCTTCTGTTACCTCCGCCAAGTCGATGGACAAAACAAGCACCAATGGCCCCCAAGAACAAGATAAGCAGA ATTATCAGAGCTTCTCACCACAAGCTCCCTACTATCCTGGGACCGCTTGGCCTTCCCCATGGAATCCAGTGCAGTGGAAC TCTCCGCCCCCACCACCCGTTTTTTGCTCACCAGGATTCGTTGCCCTGCCATTCTACCCTGCAACAACTTGGGGCTGTAC CATACCAGGAGCGTTGAACACCCCATGGCTAGCTCAACCATCAACCCCAAATGGCGCAACAGCTAACTCAGGTCCTAACT CCCCAACCTTGGGTAAGCATTTAAGGGAAGAAAACATGCTGAAATCAAATGAGTCAACCAGCGGGAATGGACATAACAAA GAAAAGTGCTTGTGGGTTCCGAAAACTTTGAGGATTGATGACTCAGGAGAAGCAGCAAAAAGCTCTCTATGGACATCTCT CGGAATAAAAAACGATAAGGCTGAATCAGTCCCTGGAGGAGGACTTTTTAAAGCATTCACTTCAAAGCATGATGAGAAGA ATCATTCAGTGCAAGCCTCGCCACTCTTGCAAGCCAATCCAGCGGCGTTTTCTAGGTCACTTAACTTTCATGAGACCTCA TAACCATGTAGCTTACAAATTTGAAATTTTGGATGCAGAAAACTGATTCAACATTTCATGAGGAATTACAAACTGTAAAG CCTCATTGGTTCACCAGCCTTGTTTTTAATAGTTCTTGTTGTCAGCCAACTGAAGAAGATTTGAGTAGAGAATGGTTCTT CCTGCACTACCATCTGAAGAAGAACCGCTTTGGTGAAGGATCATTCTTTTGCTTGTAGAGTATCTTCCCTTTCATTTGGA TGGATTTTTAGTTATGTACATATTTAAGTTCATATGACATAGTGAGATATAGACATATAGTGAGTTTGTTTTTCTAGACA TCATGTGTATATAAATAAGAATGGGGGTTCAGAATGAACTTCCTGTTCTGGTTTATTTCTTTCAGAACTTTTGGAGGCTA AAACTTTAAAATATAACTGGAATGCATCCATTCAATTCTCTACATATATGAAGTCACAACACCCTTGACAGATCCCTAGA CATTGTCATCTGCTATTTTGAACTATATTAGTAGAACATTGGCTATAGCGCATTTGTTTTAAG
CDS sequence (LotjaGi1g1v0504600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGAGACAAGAGACCCTGCGATCAAGCTATTTGGGAAGACGATTCCGCTGCCGGAGATTGCTGCCGGATCGGGATA CTCCGCCGGGGATGAGAATCATGCTTCTTCCACCGACTCTTCCAGGGAGTCCCACACCAACAGGGTGGTTGCACAGAAGC AACAAGAGACTGTGAAGGACACATTGGGAGAAAACCCAACTGATATTAAGAAGGAAGATGGAGTCCCCATGCAATTGGCG AAGGAGATCACGAATACAGATACAACCTCTAGGACCGGTGAAGAAGCTGTTACCCTGTCCACTGAGAGGGGGTCTACTAC ATTGAAAACTTCAAAGACTGAAGAAGGACAGAGCGAGACGAGTAATTCACAGGACAAGAATCTCAAAAAACCAGACAAAA TACTTCCTTGTCCCCGCTGTAATAGCATGGACACCAAGTTCTGCTACTATAATAATTACAACGTCAACCAACCCCGACAC TTCTGCAAGAATTGCCACAGATACTGGACTGCTGGTGGAACCATGAGGAATGTACCTATTGGTGCTGGTCGCAGAAAGAA CAAGAACTCTTCTCCAATCAACCGCCCGATAACTGTCTCAGAAGCGATGCTGCAAAATACTCGGACAGACTTGCCAAATG GAGCAGCCCATCATCCTTCCTTGAAGGTTAATGGTACTGTCCTTACATTTGGATCCAATACACTTACATTTGGATCCAAA ACACCCTTGTGCGAATCAATGACATCTGCTCTGAACCTTGCTGATAAATCCGTACCCAATTACACAAGGAATGGATTTCA TAGTTCTGAAGAACTAAGAATTCATGTTCCCCATGGCAGTGGAGAAAAGGGCGATGATCAATCCAACAAGTCTTCTGTTA CCTCCGCCAAGTCGATGGACAAAACAAGCACCAATGGCCCCCAAGAACAAGATAAGCAGAATTATCAGAGCTTCTCACCA CAAGCTCCCTACTATCCTGGGACCGCTTGGCCTTCCCCATGGAATCCAGTGCAGTGGAACTCTCCGCCCCCACCACCCGT TTTTTGCTCACCAGGATTCGTTGCCCTGCCATTCTACCCTGCAACAACTTGGGGCTGTACCATACCAGGAGCGTTGAACA CCCCATGGCTAGCTCAACCATCAACCCCAAATGGCGCAACAGCTAACTCAGGTCCTAACTCCCCAACCTTGGGTAAGCAT TTAAGGGAAGAAAACATGCTGAAATCAAATGAGTCAACCAGCGGGAATGGACATAACAAAGAAAAGTGCTTGTGGGTTCC GAAAACTTTGAGGATTGATGACTCAGGAGAAGCAGCAAAAAGCTCTCTATGGACATCTCTCGGAATAAAAAACGATAAGG CTGAATCAGTCCCTGGAGGAGGACTTTTTAAAGCATTCACTTCAAAGCATGATGAGAAGAATCATTCAGTGCAAGCCTCG CCACTCTTGCAAGCCAATCCAGCGGCGTTTTCTAGGTCACTTAACTTTCATGAGACCTCATAA
Protein sequence (LotjaGi1g1v0504600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSETRDPAIKLFGKTIPLPEIAAGSGYSAGDENHASSTDSSRESHTNRVVAQKQQETVKDTLGENPTDIKKEDGVPMQLA KEITNTDTTSRTGEEAVTLSTERGSTTLKTSKTEEGQSETSNSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRH FCKNCHRYWTAGGTMRNVPIGAGRRKNKNSSPINRPITVSEAMLQNTRTDLPNGAAHHPSLKVNGTVLTFGSNTLTFGSK TPLCESMTSALNLADKSVPNYTRNGFHSSEELRIHVPHGSGEKGDDQSNKSSVTSAKSMDKTSTNGPQEQDKQNYQSFSP QAPYYPGTAWPSPWNPVQWNSPPPPPVFCSPGFVALPFYPATTWGCTIPGALNTPWLAQPSTPNGATANSGPNSPTLGKH LREENMLKSNESTSGNGHNKEKCLWVPKTLRIDDSGEAAKSSLWTSLGIKNDKAESVPGGGLFKAFTSKHDEKNHSVQAS PLLQANPAAFSRSLNFHETS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 500 | 500 | 3.3E-223 | – | |
| PANTHER | 1 | 500 | 500 | 3.3E-223 | – | |
| MobiDBLite | 16 | 133 | 118 | - | – | |
| MobiDBLite | 42 | 62 | 21 | - | – | |
| MobiDBLite | 63 | 77 | 15 | - | – | |
| MobiDBLite | 81 | 124 | 44 | - | – | |
| Pfam | 133 | 189 | 57 | 8.2E-32 | ||
| ProSiteProfiles | 135 | 189 | 55 | 28.817 | ||
| ProSitePatterns | 137 | 173 | 37 | - | ||
| MobiDBLite | 276 | 322 | 47 | - | – | |
| MobiDBLite | 286 | 322 | 37 | - | – | |
| MobiDBLite | 377 | 396 | 20 | - | – | |
| MobiDBLite | 377 | 399 | 23 | - | – | |
| MobiDBLite | 459 | 484 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0504600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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