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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0506400 |
| Transcript ID | LotjaGi1g1v0506400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G29090.1 pectin methylesterase 31; Swiss-Prot: sp|Q9LVQ0|PME31_ARATH Pectinesterase 31; TrEMBL-Plants: tr|I3SHJ1|I3SHJ1_LOTJA Pectinesterase; Found in the gene: LotjaGi1g1v0506400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102457563..102461910) extracted from Lotus japonicus Gifu genome v1.2.
AGTAATAAAACGGAGCTTCAAGGAGACAGAACCATCTGTATCTGTTACCTCGGAAATGTTGTGAATGTGAATGTGAATGT GATGTGACAAGTACAACCCTTCTTCATTTGGATTTTTTGGTGCGTTTTTTTGTCTGTCTTCACACCGAAACCACATCACT CTCTTCTGTTCTACACAATGGCAGCTTGCATATTCACTGTGTCACAAGATGGAACTGGAGATTTCCGAACGGTGCAGGAA GCAATCGACGCCGTGCCGCTCGGCAACGTTCGCCGGACAGTGATTCGGGTGTCTCCGGGTATCTACCGGCAGCCGGTGTA TGTGCCTAAGACAAAGAATTTCATCACTCTTGCTGGCTTGCACCCTGAGGACACTGTGCTTACCTGGAACAACACTGCCA CCAAAATCGAACACCACCAAGTAAGTACGCACTTTTTCTTCATGGTTTCATCTTGAGGTGATGGGCATGTGGCAAAATCG TTACTTTCTTTTTCTTCATTTCATTTGGGTTAATGGGTATGTGTCAAAATTGTTCATTTTTTATTTTTGGTGTTTTCTCT CATTTTGGGTATTGTTTATGGTGGATTTTTGTTGCAGCCTGCTAGAGTGATTGGGACTGGGACATTTGGCTGTGGAAGTA CCATTGTGGAAGGGGAGGACTTCATTGCTGAGAATATTACTTTTGAGAATTCCTCCCCTGAGGTAAGCTTGTGAAATTTC AGTGTTTTCATGGTGTTTGCTTGTGCTATAGTTCCTTTCAATCCTTTGTTATCCCTTATTCACTTTGCTGAATGGCATTG GTTTCATAACTGAGTATAAGTGCATGTAGGTAGAGGAAAATCTAATTACATATAAAATTTGGATAATTCCTTTCCCTTTA TTGGTAGTTGACATGTTGATAGTTTGGCTGTCGTAACAGATGTAGTATTATGTGAGGGAATATTGGTAATTTGAAGCTTT TCCTTATTGAAGTTTTTGGATCCGTCGATTGCTGGATATGAGCCCCTTTCGATGCGAGCATATATTGGAGTTTATCTAGT TCATTTTTTAGTAGAGAAGCTTTTCCTTTTGTTTGTATCCAAATGGGTTCTATATACATTTACTCTGTTTCCAGCCAACA ATACCGTTGTAAATTCATTAGTATAATGACTTGCATCTTCATCCCAATTAGTAAGTTCATAGGTTTGATGGGATGTACAG GATCAAACTTTGAAAGACCTTATATAGTGCTTCTTCCTTTTTTTTTTCCTTTTCTGGCAGGGTTCAGGCCAAGCAGTGGC AATTAGAGTGACAGCAGATCGGTGTGCCTTCTACAATTGCAGATTCCTTGGATGGCAGGTAGCTCTAGAGCTCCACTGTC TTGATGTGTTAGTTTATACCAGCTTTTTGGTTTCATGATATATTTTATTTTTGTTATATAGCATATTGTATTGTTGAAAA AAAATTGAAGACCTTCAAATAATTCATATTTTCTGATGAAAAACTTTAAATATGAACAGGTTAAGTGATTTCTTGGTTGG TTCTCTTGAAAATAATAGTGTCTTAAATTAACTTGGGGCTGTGATTGGTAGACTATGTTCAACTCCCAAGTTTTGTTTCA TTAAATTTCTTTCATGATTATGATGCAGGACACACTGTACTTACATTACGGCAAACAATATTTGAAAGATTGCTATATTG AAGGAAGTGTGGATTTCATCTTTGGCAATAGTACTGCTCTTTTGGAGCATTGTCATATCCACTGCAAGTCTGCAGGGTTC ATTACCGCACAGAGTAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTGAGGTGTGTAACTTACCACTGGCCAGT GTTAATCTCGTCCAACAGCTGTTAATTACTGTGTTTTAGTCATTAGAAGTTATTAACTTGTCTGAAAAGGAAAGATTTAG TTCCTAAGGATGATTTTTATTCAATAATGTGATTGTGAATTGAATTTTAACTTCTATACATGGTAGGGAAAATATATTAG TTGCCACTTTGCTATCCCAAGGCAACATTCTTCTCTCTTGGTGCTCATGAGTTATGCGTGAGCTCATCACTCCTGTTTGG GACACAAGTCTACATTGATTATGGTTCTGATTTTAGTTTGGCATTAATGAGATGGGATGGAAAAGAGAGAAGAAGGAGGC AATACATTTTTAATGCTATCAGGAACATTAACCTAAAACTCCTAGTTATAGTGATATTTTAGGTCAAGTAGTAGTGCTTA TAACTAGTACAAGTACTCCTAAAAGTTAAACAATAACAAGTCTAATGTTCTAACATTAGTGTTTGATAAGATTATTGCCT TTGCCCCTTTTTGGTTTAGGAGTTATCAGTTATCACCTCTGTAAATTTACATTAAATCAGCCTTCTTCTAAGTTGTGCAA CTGCTAAGACTTGCTTTTGATATTGAATACAGTTTCAGAATTGCCACCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCCCTCCCTCTCTATCAATCTTAAAGTACTACTCCTCTTGCATTTCGTTTATAGGAAAATAAATACC AATTTTGGCATTTAAATTGTCCTTTACTGAAGGATCTTAAGAAACGAATATATATTTTTTTTCTGAGGATTAAGAGTTTT TTTATGCTTTGATATTGGAACAGAGTTAGCTTTCGGTAATAGTTGTATGACATATTTGAGTTATCTTTTAAAAATGGAGC GGGTAACTCTTTTCTACTTGCCTCTAACTTGGAGGAAACATTGATGATGTAGCTAAAAACTATGAATCTTTCTGAATTGA TTTTGTATAAGTCATTGGTTGTAGTTCTTGTTCAGGGAATCTTCTTTTTGTTCTGGACCTTTTGATTCTTCATATTATTT TACCAGTGAGTGATACTGTCTGGTGCCATTACAGATGTGTTATCACAGGTAATGGAGGACATTCATACGCATATCTCGGA CGACCGTGGGGACCTTTCGGAAGGGTGGTCTTTGCATACACTTACATGGATCCATGTGTAAGGCATGTTGGCTGGGATAA TTGGGGGAAAGTTGAGAATGAGAGAAGTGCTTGCTTTTATGAATACAGGTATCCATGTCAGATTTCATTTTGCATTGTTT TATGCTTTGCAGGTGTTTATTGTTTGAAATAAACCATTATAAATTTAGTTTATATTCAGATTATGAGCTGCTTCATATTG CCAGAAGATAAAAATTAGAGTGTTGTTTGGATCAAGAATGCACTGTTTTCTACTATTATCATCAATATGCTAGAAGATGT AGAGCTTCTATTTCTATCCTATCCCAATATGTTAATCCACCCCTAAGAAAAGTACAGCTTTGTGTGTTAGAATACTTAGA ATATTAATGTTTTTATGGTTTGTCATGAGGTGTTCCCTTACCCTACTAAACAAACAACAACAAAAGATTTATTCTACAAA GTTAGCTCAGTTATATGGATCATCTATCTGACATCATTGCGCTCTAGTCAAAACCAAATTTTATGTGATATTATTGACCA TGAGACCACGTTTTTAAATATCTTCCAACGTCCTTTTTGACCTACGTCCACCCCTCTTCACAGAACTAAGAAACATCTTA TGAACTTTTCTCACCGGTGTCTCCATATCTTTTCAACACATGTCCAAACCACCTTAACTGAATTTTGTCATCTAAAAATA GTATAAAAACGTTGCAAATAAATAATTTTTTGATTAAAGATTCACTTGGGGTTAGGAAGAGAGGTTGGGGCTTGGGGGTA GCATAGTGTTTGGCTTGCCTATTCTATGCAATTTTTTTGTTTATTTAGCTCAATAAGTTTGGCTTAATTTTAACATAACT GTAGGTGTTTTGGACCTGGTTGTTCTCCATCCAACCGAGTGAATTGGTGTAGAGAATTGATGGATGAAGAAGCGGAGCAG TTCATCATGCATCCTTTCATTGATCCAGAACCAGAAAGGCCCTGGCTTGCACAGAGAATGTGCTTGAGGATTCCATATTC TGCTTAGGAAGTACAGAGGACTCCTATGAGAATGTTCCATATTTGTGTAAGTCGGAAATGCTAGATGGTGCTTTTTCCTG TGAGAGATTTTCTTAGTTTTTTTGTTTTATATTTTCATAGATTGAAGAATTGTGATCCACGTCTTTTGACCATGTATTAA TATCCAGAGACGTATTGAGCAGCAAAATATCAGGATGGTAAATGAAAATAGTAATAATAATTTCATAGTTTTGCACTTTT TTTTCTTGAATACTCTCTCACCTTCTTACTTTATATACAAGCTCACTTCATCACTCTCTCACCTTCTTACTTTGTATACA AGCTCACTTCATCAGTAACATTTAGGCC
CDS sequence (LotjaGi1g1v0506400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTTGCATATTCACTGTGTCACAAGATGGAACTGGAGATTTCCGAACGGTGCAGGAAGCAATCGACGCCGTGCC GCTCGGCAACGTTCGCCGGACAGTGATTCGGGTGTCTCCGGGTATCTACCGGCAGCCGGTGTATGTGCCTAAGACAAAGA ATTTCATCACTCTTGCTGGCTTGCACCCTGAGGACACTGTGCTTACCTGGAACAACACTGCCACCAAAATCGAACACCAC CAACCTGCTAGAGTGATTGGGACTGGGACATTTGGCTGTGGAAGTACCATTGTGGAAGGGGAGGACTTCATTGCTGAGAA TATTACTTTTGAGAATTCCTCCCCTGAGGGTTCAGGCCAAGCAGTGGCAATTAGAGTGACAGCAGATCGGTGTGCCTTCT ACAATTGCAGATTCCTTGGATGGCAGGACACACTGTACTTACATTACGGCAAACAATATTTGAAAGATTGCTATATTGAA GGAAGTGTGGATTTCATCTTTGGCAATAGTACTGCTCTTTTGGAGCATTGTCATATCCACTGCAAGTCTGCAGGGTTCAT TACCGCACAGAGTAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTGAGATGTGTTATCACAGGTAATGGAGGAC ATTCATACGCATATCTCGGACGACCGTGGGGACCTTTCGGAAGGGTGGTCTTTGCATACACTTACATGGATCCATGTGTA AGGCATGTTGGCTGGGATAATTGGGGGAAAGTTGAGAATGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACC TGGTTGTTCTCCATCCAACCGAGTGAATTGGTGTAGAGAATTGATGGATGAAGAAGCGGAGCAGTTCATCATGCATCCTT TCATTGATCCAGAACCAGAAAGGCCCTGGCTTGCACAGAGAATGTGCTTGAGGATTCCATATTCTGCTTAG
Protein sequence (LotjaGi1g1v0506400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAACIFTVSQDGTGDFRTVQEAIDAVPLGNVRRTVIRVSPGIYRQPVYVPKTKNFITLAGLHPEDTVLTWNNTATKIEHH QPARVIGTGTFGCGSTIVEGEDFIAENITFENSSPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIE GSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQETTGYVFLRCVITGNGGHSYAYLGRPWGPFGRVVFAYTYMDPCV RHVGWDNWGKVENERSACFYEYRCFGPGCSPSNRVNWCRELMDEEAEQFIMHPFIDPEPERPWLAQRMCLRIPYSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 316 | 316 | 8.0E-195 | – | |
| PANTHER | 1 | 316 | 316 | 8.0E-195 | – | |
| SUPERFAMILY | 3 | 299 | 297 | 8.5E-93 | ||
| Gene3D | 4 | 311 | 308 | 2.1E-105 | ||
| Pfam | 7 | 296 | 290 | 1.4E-71 | ||
| ProSitePatterns | 159 | 168 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0506400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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