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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0514400 |
| Transcript ID | LotjaGi1g1v0514400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor TFIID subunit 8; TAIR: AT4G34340.1 TBP-associated factor 8; Swiss-Prot: sp|Q9SYZ9|TAF8_ARATH Transcription initiation factor TFIID subunit 8; TrEMBL-Plants: tr|I1KWG4|I1KWG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0514400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:103673381..103681963) extracted from Lotus japonicus Gifu genome v1.2.
CTGACCAGTCCAAAACGACGACGTTAGTAGTTCAATATTCAACATTGTTCCTCAATTTCCCCCAAATAAATTCAATATAT TAAGAGGGTTCAAATCTCAAAATCGCATCGTGTCCGTGACCGTGACTGAGCCTAATCCTCCTTCGCAAATTCAACTTCTC CCTCTCTGCTTCCAATTGCATCTTCAATCCAAGGCTTTTCAAGGGTTTAACATAAACCCTAAATTTCCCAATTTCTTCTT CTATACACTCTTACTGTCTCCGAAATTGCAAGCCCACGCACTCTCACCCCATGCCCTTAGATCTAATCAAGACTTTGCAG TCATTGGTAAGTTTTTTAGTTTCTTTTCGATTTTTTAGTTTTTTTTCGATTTGGGTTTTTGAAATTTTCACCCTAATTGG CTTTCTCTTTGCAATTCAAATCGGGATTGGTTAGGGTTTTTGCTTTATTAGTTGATATACTTGTGGGAAACCTTAAAAGT TGTGATCTTTGCATTGAATTCGATTCTGGGTAATCTAAAGTTTGGTTTTTTATTTCGATTTTTCGCAGAAGTGACGTTGG TGAGGTGAGGTGAGGTTCTTGGTGGAGCAATCTAAAGTTTGGGTTTTTTTGATTGCGATTTATCTCTGAAGTGGTGTTGG TGGGGTTTTATTCTTGGTGGGGTTTTGGGAATGAAGAATTGTAGTGATTTGGGGAATGATTTGTCGGGTTTTCGAGTGAT ATGAAGTGCTGAATATGAGCAATGGCGGTGGGAAGACTGGAAGACAACTTGAACAGCCTGCTGCCACATGGAGGAGGAGG ACAGTGGGTGGTGGTGATGACTTTGCTCAAGCGGTTGCAAAGATTGCAGTAGCACAAATATGCGAAAGTGAGGGTTTTCC GGCCTTTCAGCAGTCAGCTCTTGATGCATTATCTGACATTACTGCTCGATTTATTTTGAATGTTGGGAAGTCCGCACATT CCTTTGCTAATCTTGCTGGTAGATCTGAATGCAATGTTTTTGACGTCATTCAAGGGTTAGAAGATATGGGATCAGCACAT GGGTTTGGCGGTGCTTCGGATGTTGATCATTGCCTTGAAAGTTCAGGTGTTGTTCGGGAAATTTATCAATTTGTTAATGA GGGTGAACCCATTACGTTTGCGCACCCAATACCTCGATTTCCAGTTGTGAAAGAACGGGTGCTGCCTCCAAGTTTTTTGC TAAAAGGAGAAGAGCCACCCGGGGAGCATATTCCAGCATGGTTGCCCGCATTCCCTGTTCCACAAACTTATTCAGAGTCA CCGTTAGGGAATGGAAGAGGGACAGAGCCTTGTGCTTCTAAATTTGATCAAGAAAGAGAGAATGGCAATGGGGAGAGACC TCTGTTGCAGCAGCAGATGGTCTCAAATATGTTTGAAAAGTCCACCGTGACTGACCCTGCAGATGCTAAGGCGAAAAGAG TAGCAACAGAAAGCAACCCATTCTTTGCTGCACCTTTGAAATTTGAGGAGAAGGAAGTTGCTTCTGTTGCCCCTCCAACT AAGCTCTTCAATGGTGTTGTAGCTTCTGATAATCCTGTGGTGGAAAATTTCGTTAAAAATGACTCAGTTTCAGTATTGGA GACCTTTGCTCCTGCGATTGAGGCCATGAAAAGCACATGCTGTGATTCCAAGGAAGATCAAACACATTTTCCTGTGAATG AGAAGCCTACTGTGCGTTTTAAGGTTGGGATTAAAAATAAATTCTTAGGAAGGTCGGTTGGCTTGATTCCACAAAAAGAG GAGCATAAAAAGACTTTGCCGTGGTTTGCGATGGAAGATGAGAAGGATGATAGGAAAAGAAGGGCTGAGAAAATTCTGAG GGAATCTCTGGAAAACCCAGATCAGCTTGTTCAGTTGTAAATTAGATTCTGTATACTTGATCAGGAGAATGTCAGGATAA CTAGTTCTGAGACGTTGAAATCTAGCAAACTGTCTGCTTATGGGCATTATAGGATGGATTTTCTATTTTGCTAAGACATG TTCCTACTTTTACAATCTTTCAGGTATGTGTATGTCAATTGCTTGGTAGATTAATTTATGATTCTTTTTATTGAAGTTTG TTGGCACTCCAGATGGTCTTATTATGCTCTGATTAAAGCATATCTACTTCTGACTTGTGGCAGTTGCACTGAATAAATGT GCTAAACCCATTTATATTAATCATCAATGCTACTTCTACACTGTACTTTCTAGTTAAACTATTCCGGTTTAAAAAATAAA TACTTGAACATCATGCCAAATGGCCAATAACACTAAATAACTCCCATTATTTCGAATCTCATCATATTAACTGAGGCAAC TGAGAGCAGGTCATACTAATTTTGTTATAATAATCCTCTGCACATTTTCGTTGTAGAATGTTCATGTATGATCAAGTAGT TTCTAAATGTCATGCTCAATTACTACAGGGGAATTATTTGTTTTAGCCTGCATTGTGTATTTCCCAATATTTCTTTCTCA TTATCATCACTCATTTAGCATAAGGTTCCTCTAAAGTAAGCCTTTCTGAAGTAAGGGCGTATCTGTCTTTTTTTTTTTGG AATGGCCACATATTTATTGATCAAAGAAATCATGGGGTTTGCACTCCCATTTTTTCTTCATTTTTGATGTTTTGAAGTCA TTTTAACATTGTTTTCTATGTTCAATCTATAGCTGTTGTCTGCTCTACTCTATAGTTGCCTAAGAGGCTTGCTTTGGTCT GTTGAGGAGAAGATCGATAAAATATGAGTCGAATGGAAGATCTGATATTTTTTCAAAGTGGATTCATTGGATAGATTCCA ATGATGTTTGTGTTTTATGTTTCTACCTCCTTGACTCCTAATGTTTTCCTCAAATTTCGCTTGACAAGGCTTGGTTATTG TTACGGTTGTGTGTTCTACTGTTTTCAGTTGAGATGTGCCTTGAACTTGCAACAACTTGTAAATTTTTGTTTTCCAGTAT TACAGATTGTATTCATTCTGTCAGAAGGCATATTCATGCTTCAACCAAGTCCTAGATTAAGGAATAATTTCTGGATTGGA TTAATTTTTGAATGTTTGTTCAGATAACTAAAATTGTCAACATGATTGCCCAGCAAGATTCCTCTTACCAATTTATATAA GCTGTATCTTTTAATCTACTATAATGAGTAAGGATCACATGGTCTATTCATGCACAATCCTAGTGTTTCAGCAGTATTTT AAAACTTCTCTATCTTTCTTGACGACCTTCTATTTTCATATGTTGAAATTACATAAAAAAAATTCTCATTTATTTTTCTT CGATTTTGTGTTATTTAGTGCATTTACGGCAAATATAGTTGTATATTAAGGTAACATCAATTGCCGGGAAGATTAAGCTC TGTCCATAAATTAAAACTTCAACCCAATATAATTGTCTATGCATATATGCGACAAGGAAGGAATATCATCTTGTTGACAA TTTTTTTCTTTCTTTCACAAAGTGAATCCTAGAAGCCCAGGCACAATTCATGATAACTTAGATTTAGACTCCACAAATGA ACACAAACCCAAATAATCATTCACTAATGGTGTGAAATTGCTTCTTGTTGAGCGCAATGGAAACTAGAGTTTCGTCGTAC ATGGACAACTAGATGCTGGCTTCAAATTGCTTCTTGTTGAGCGCAGTGGAAACTAGAGTTTATGGAAGGAAGGAATGAAG AAGAAGAAGGGTTTCTGAAAAAAACTTGAAATTCAGGGAAGGATAAAAGTGATTTTGAGGGAAAGGAGTGAGTGGGAAAA TTAGTAGCGGCAGATTATAGAGGAATCAAATTCTTCATATAATGTTCTTCCTTTTTGTGAATTATGATATTAGGCCTTTC AATTTGGTTTTTGTTAATAAGGGTTAAAATTAGATTAAGATAATTGGGGAGGAGTTGGAATAGATTGAAAATTTGGGGAT TATGTTAACTACTATGGCGTAGAAATGTTAAAAACCCTAAAATGTCACGTCTTTTAAAACTAAACACATGAGAGTGTCAC ATTAGTTTTATGAGAAAATAGCAAAGTGATCGAAGCTTCTGCTTGACGATGACTAAAGTGGTTTTATTTCTCTAATCGTA TGAACATTTTCTCAACTTTTCTCTAACGTGGGACCAAAACCAGCACTCACTCTTAATGACCAAAATCTTGATCAATCCTG AAATCAATTTCAAGTTGCACTTAATTTATTCTCCCCGCTAAAATTATGTTTCTATTAACGTTAGGGTAAAAGTGAAACGA CTTTTAATAAAAATAAAAATGAGGGGGAAGGCTTGATTCACGTGTTAGCGTTGAACTTATTTTTCCATTTTTGTTTGTTG GTGGTGTTGTAAACTTGTAGCCCTCTTTTTGGTGGAATTTGCCTCCTTTTTTGTGTCATTTGTAAAGGAGTTCTGAGTTT TCCGGCGATAGATATTACATATATTATTTTGATTTAATAAAAAAGTAATACAACGGAATACTATTTGACTTCCCAAACAT ATACTAAACAAACATGTTTTGCTTCATTTACACTATACTTACTCTTATAATTCATTTTCATTCACATTCTTTTCTTATCT CTCTTCTTTTTCTATCACATCACACATCCTAACTTTCATTTATCTATCTTCTCGTCCTTCTCTGAATTTGGGTGTAATTC AAGTGTCGACCTTTCCTAAGTATAACAGCTGAGGAATTTTGTAAGTACAATCTTGAAGAACAGGAAAATAACTATAACCC CAAGCAACAAACCAAACCCTTTTGGTCCTCCTACAGCTTAAGTTGTTTTAGTTCAAGGGAACTTTTTTTCACACATTCCT TTTTCATTATTTAACCACCTCAATCTCTTTGGGTATTGAGATAGTAATACTAAAGTGGAGCTGGGTTGACGTGAAAGTCC AAAAAAGAGGAAGTTGGAAAAGGAGGGAGGGTTTGGTGACACTATGCTATACCCAAATTGAGAATATAATATGTTAGTAT AATAGTGTATTTCTGCATGTATTTATGAACATAGACAATAAATACATGAAGAAAGACAGTAAGGGTACACATAAAATGTG CAAAAATTTATACAAAACAAAGATGAAACTCTCAGCTATGAAACTTATTACCCATTTCAAACTATATGTATAACTGAATT AAAAGGTGAAAAATGATTTTTTCTTTGCTCAAACGCATAGCCAAAAATCCTACTTGGGAAACAACAATTGCCTGCAATGT CTACCACACAGGTTTGCTACTTCACCCTTCACAGCTTCAGTGATCAAATCTTTAAAGATCAACCGTTCGATATCCAACAC AACATTTGGTATCTCACTGCAGCAGTTAGTCCAAATTGGGTGATGATGCTTCAAATCTCCACACAAGACACTTGATAAAT TCTCATCGTCAGAAGCTACCCTGACATTCCTATTTTGAGGTTGTAACTGATCAATTTCTGTACATAGCTCATAAAAAAGC TTTTGCCCTTTTAGCTTTCTTCCTTCTAGCTCATTTGGCAGGCACCACAAAGTGGAAGAATTCTCCAATATCAGTTTTTG AACTAAAATGTCATTAACAACATCAAATATGAGTTTTCTTTGCATTTGCTCAGGACTGATAATCCTGGAAATTTTCTTGG CACTGCCTTCAATGCTGAAATCCCCCTTGCTTCTCTTTATTTCTTCAAGTGCGAAGAATAACTTTGGGTTAATTAATTGA CCTCGTGAATTAAGTATCTGGCTAGATCTGTGACCACTGAGTAAACCTGATGCTAACAGTATTTCTGATATGTACTTATG GTCAGGATCCTTGGTGTTACTGAAATTGAAAAATTTCTCATCAATCCAGTCAATTTCTTTGAGTATTTCAACCAAATTCT GGGTGTTCAAGTCTCTATCACTAGATCCATTGCTTAAAGAATGAAGATCCACTGAGTTCTCCACACTATCATCATCAGTG CTTAGAGTTTCACCTATAGCAAAAGAGTTGAAGAAACTCAAAATTTAAATCAGGATCCTTTACTGAATGATTTTTGTAAT GCCACTAATTTGTATAATATCTTGATAAATTGAAATTATGCATGATTGATGGCATGTTTGTATCAGAAGTTGCTCCCCAG AATTGATTTTAACTTCAGTTTCAATATAGAAGAGTTTCCAAACATGCACTGAATCTATGTTGCTTACCTAAATTGTTTGA GATGTCTGATTTCTTTCTCACTGGAGATGGTGGGTCTTCCCTATAAAATGCAGCATCAAGAACAGATACAGGACTTGGTT GTTCTGGATTAACTAATGTCTCAGCCTTGGAGCATTCCTTCTTCAACTCTTCAAATACATTCTGATCAACAAAACAATGT TTAACCAATTGATGTTAGATGAAAAATGATGAAAATATAACTATAAGAGGAATAAATGCTTACACTTTGATTCAGGCCAC TCAGCTGGATGGATGTGCTATTGATATTTCCTGATTGATCAATGTGTATGATTTCTATGTCACTATGAGTTGCCAAGCTT CTTTTTCTGTCAAAATCTGGAGAAATGACATTGACATGATGCATAACACCTTTCCAGTGATAGCTGATATCACCGAAACG TTCATTTCTTTCGGGCAAAGTAGAGATATTTTGCCTTGGGGAAGACAATTCCACAGGTTGTCTATTATGTTTTCTTCTGT TAATGCTGGAATCTGATGATGGACTTGCTGGTGGTGAACGCCTTTCCAAACCAAACTTTTTTTGTAGTCTTGGGCTCCCA GTCACTGTCATATTACCTGAGTTTGCGGTGCTCTCTCCATTGCCGTCCTGAGAAACTTTGGAGGATTGCATCAATTTTGA ATTTCTTAAGTTATTGTTCTTGTCCTTGGTATTTTTTGTTGTTGAACTAATACCTTTAGCTGTTTGCTTATCAACCAATC TTCCATTCCTGGGAGTACTAGGGGGAGAAGAGTTGTTGGCTTTTCTAGTAACTCTTGCTGGTTTCATGATGACAATTGGC ATTTTACTAGAATTTGATTTCTCAACTGTGACAGATGCTGGGTCCTTTTGTGGTATTCTTGGGCTTCTTACATTGGAGTT TTCACTGATACTGGTATTGTTCTGATTGTTAGATGGTGAGTTTAAAGCTTGATCTCTTGCAATATCTGATGTATCTTTAT ATCTCTGCATTGCATCAAGAATCTGTTTAAGGGCTCTGAGATCCTTACCAGACCTTTTGAACTCAAGTTCTGACACCCTT TTCTCAATTTCCCCATAAACAGATAATGAGGATTTTGAGGCTTTTATATCAGATTCACTTCCTTTGGAATCTTGTGATTG TAAACTTCGCCTTGAATCAGGTTTCCTCCAAGGACTTGGTTCTAGCGCGAATCGCGAATATGGTGTCACATTTGTGATTG TATCATCACTAGATCCACATGTTTGTGTCTTTTGAGGGAGGGCTTCTAGTCCCATCAACTTCGCTACAACACAAGATGAT CTTTTAGAAGTTTCTGGTTCTTGCAGATTGTTAAGCACTGTGTTGTAGTTCCTTCCAATTCCATACACTTTTTGTGGATC CTTCAACAGGTTGTGAGCCTTGTTTCCTTCATTGAAACCTCTTGTGGATCCTTGTCTGCTATCCAAGGAAAGCCTTGGAA GTTCCTTATGCTTTGTGGCTGATTTGAATTTATCTTGTGTATCCCTCCCATCATAAGAGAGCCTCGGCAAGTCCCAAGGT GATTTCTTGGACTTAGAAAGAACATGGAATGGTTCATTTGCCGCTGTAACTCCTCCATTGATAGACTTGTGAGGCTGCAA AGGCCGCGGAGAATCTATGTGCTTCAATGTATGAGTCTGACCTTTCTTTTTCTCTTTTGTTGCAGTTTTCAATGACAACC CTTGTGCTTCTCTATACATGGAGTCTTTGACAATGTCACAGAACTCAAGGGATTTCTGGCTAGGTGTATCATGCTGCTTC ATTGTTATTTCTGAAGGTGGGTTTATTGCAACTCTAATTTGACTTTTTGGTGGTGATTCTGTCTGAATTGTTCTGTTGAA CTCAATGGATGACATGCTAGAGGAACAAGATGATGAAGACATAGAAGCAGCTGATGATTCTGTGGAGAATTGCTGCTTCT CTCTTGCATTCTTCTGATTCTTTGCCTGCATTGACACTCTAAATTCTTAACTGGTTTTGTTAAAGTTCTACTCTACAGAG AGTGAAACTAGAGTACTGTGATCTTACCTTTGTTTTCTGAATTTTGTTATTGAGCTCTTTGATGTCATTATTGCTTTCAA CTGAGAAGGGAAAGAAAGTTGAGTTAGAACTTGGAGTTAATATGATGTATTTTCTCAAACTTTAATTCTCAAACTTTGAG TTTCTATTAAAATATCTGTTAGCATGTTCAGGTACACAAAAATATCTATGGAAAATCCTAAACATAGAATGTTCAATTTT CTTTTTTCTTGGCAGAATAATCAATAATGTGCAACTGTGCAACTTGGGAGAATTTAAAGCAATTTCATGTATCTATCATG CATTAAATTAGGAAAATGAAATAATTCTTGGCTATAGATAGACAAATAGATACTTGTATAGATCACAATGGGAGATTTTT TTTTGGTTTGATGGCAAAAAACC
CDS sequence (LotjaGi1g1v0514400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAATGGCGGTGGGAAGACTGGAAGACAACTTGAACAGCCTGCTGCCACATGGAGGAGGAGGACAGTGGGTGGTGG TGATGACTTTGCTCAAGCGGTTGCAAAGATTGCAGTAGCACAAATATGCGAAAGTGAGGGTTTTCCGGCCTTTCAGCAGT CAGCTCTTGATGCATTATCTGACATTACTGCTCGATTTATTTTGAATGTTGGGAAGTCCGCACATTCCTTTGCTAATCTT GCTGGTAGATCTGAATGCAATGTTTTTGACGTCATTCAAGGGTTAGAAGATATGGGATCAGCACATGGGTTTGGCGGTGC TTCGGATGTTGATCATTGCCTTGAAAGTTCAGGTGTTGTTCGGGAAATTTATCAATTTGTTAATGAGGGTGAACCCATTA CGTTTGCGCACCCAATACCTCGATTTCCAGTTGTGAAAGAACGGGTGCTGCCTCCAAGTTTTTTGCTAAAAGGAGAAGAG CCACCCGGGGAGCATATTCCAGCATGGTTGCCCGCATTCCCTGTTCCACAAACTTATTCAGAGTCACCGTTAGGGAATGG AAGAGGGACAGAGCCTTGTGCTTCTAAATTTGATCAAGAAAGAGAGAATGGCAATGGGGAGAGACCTCTGTTGCAGCAGC AGATGGTCTCAAATATGTTTGAAAAGTCCACCGTGACTGACCCTGCAGATGCTAAGGCGAAAAGAGTAGCAACAGAAAGC AACCCATTCTTTGCTGCACCTTTGAAATTTGAGGAGAAGGAAGTTGCTTCTGTTGCCCCTCCAACTAAGCTCTTCAATGG TGTTGTAGCTTCTGATAATCCTGTGGTGGAAAATTTCGTTAAAAATGACTCAGTTTCAGTATTGGAGACCTTTGCTCCTG CGATTGAGGCCATGAAAAGCACATGCTGTGATTCCAAGGAAGATCAAACACATTTTCCTGTGAATGAGAAGCCTACTGTG CGTTTTAAGGTTGGGATTAAAAATAAATTCTTAGGAAGGTCGGTTGGCTTGATTCCACAAAAAGAGGAGCATAAAAAGAC TTTGCCGTGGTTTGCGATGGAAGATGAGAAGGATGATAGGAAAAGAAGGGCTGAGAAAATTCTGAGGGAATCTCTGGAAA ACCCAGATCAGCTTGTTCAGTTGTAA
Protein sequence (LotjaGi1g1v0514400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNGGGKTGRQLEQPAATWRRRTVGGGDDFAQAVAKIAVAQICESEGFPAFQQSALDALSDITARFILNVGKSAHSFANL AGRSECNVFDVIQGLEDMGSAHGFGGASDVDHCLESSGVVREIYQFVNEGEPITFAHPIPRFPVVKERVLPPSFLLKGEE PPGEHIPAWLPAFPVPQTYSESPLGNGRGTEPCASKFDQERENGNGERPLLQQQMVSNMFEKSTVTDPADAKAKRVATES NPFFAAPLKFEEKEVASVAPPTKLFNGVVASDNPVVENFVKNDSVSVLETFAPAIEAMKSTCCDSKEDQTHFPVNEKPTV RFKVGIKNKFLGRSVGLIPQKEEHKKTLPWFAMEDEKDDRKRRAEKILRESLENPDQLVQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 380 | 380 | 1.0E-155 | – | |
| PANTHER | 1 | 380 | 380 | 1.0E-155 | ||
| Gene3D | 27 | 104 | 78 | 2.8E-21 | ||
| SMART | 28 | 104 | 77 | 1.2E-30 | ||
| Pfam | 29 | 99 | 71 | 6.0E-23 | ||
| SUPERFAMILY | 38 | 99 | 62 | 6.7E-5 | ||
| CDD | 164 | 214 | 51 | 1.41859E-8 | ||
| Pfam | 165 | 210 | 46 | 2.5E-6 | ||
| MobiDBLite | 180 | 205 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIID complex | A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters. | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi1g1v0514400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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