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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0518900 |
| Transcript ID | LotjaGi1g1v0518900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0518900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104258631..104261064) extracted from Lotus japonicus Gifu genome v1.2.
CGGAGCTTCGGGCTCCGGCGAGGACCTGCTCCAGACTTATTGCAAACGAGAGAACCCAGATTTGCAAATTTTCCGGGGAG GGACTAATTTCAGACGGCGAGACAAAGACAGGGACCAAGTAGATGATTAACCCTATAATTAATTTACAAAATTAATTTTC ATCTTAAATTGATCTTCTAGCTGGTGTGAGAGTAACTTGTAATTCTTTTCAGCTCCACCACTGCTACTGAAGAAAGATGA ACGAACAGCCACAAACTAGCACACAAAGCCTCTCTCTGTTTTCCAATCTCCCTCACCACTTGTTCGTTCAAATTCTGCTT CGGTTACCGGTGAGATCTCTCATCCGCTTCAAATCGGTGTGCAAATCGTGGCGGTCTCTCATCTCCGATCCCAAATTCGG TAAATCCCATTTTGACCTAGCTGCTGCACCCACTCACCGTTATCTCGTTAGAAAAATCAACGATTCTTCTGAAATTGAAT CCCTAGATTTCAATGCATCACTTCACGATGAATCTTCTGCTATAGTGAAACTCACATTACCGTTTCCTTCACCCCTTGTT GAAACCATCATCGATACTCGTTTTCATCAAAACCCTATCTATATTCTGGGTTCCTGCAGAGGGTTTGTGGTCGTAGCATA TGAACGAGGCTCCGTCGTTGTTTGGAATCCATCAACAGGTCTCCAGAAACCAATTCCAGACATATCTGGTGAGGTGACTT TGGAATTTCTAAATGGGTTTGGGTATCACACATCAACTGATGATTACTTGCTAGTTTGTGTGAGTTTGATTCCTTTGGAG TATCTTCTTGAACAGATAGATGACTATCGTAATCACATTTCGTATTTTTCGTTGAAAACAAATTCCTTTACTGAAATGGA TGATTATCAGGCTGATGTTCAATATGTGGATATTGGTAATTTTGATTCCAGAGTTGGGTCCTATTTGAATGATGCTTTGC ATTGGCTGGTTATCTCTTTTGATACCAAGCATCAAGTGATTATTGCATTTGATTTGGAAGAGAGGACTTTGTCTGAGATT CCTATATCACATCATTTAGCCAAGGAGTTAACATTTACCCAATATTATTTGAGGGAACAATATTATTTGAGGGTCATGGG AGAATGTCTCAGTCTGTGTTACCCGGGTAACACTAACATGACTTCGAAGGCTGAGATCTGGATGATGAAAGAATATAAAG TGCAGTCATCTTGGACCAAGTTGTTTGCTTTTTCTACTTGTGACGTTCCCCGCAATGTCTTTTTTCCAAAATGTTTCACC AACCATCATGGAGTTTTTGGATCAAATGGCTCTGAAAGATTGATGATACTTAATGACAAAGGACGGCTGCTTGATCAGCA TACACTTTTGCACTTACGTAATAAATATCAATATATTCAAGTAGGTTGTGGTATGTATAGGGAGAGTTTACTATCACTCC CTAATGACTTTGAGGAAGCAAGTGAAGATAACCAGCTGACGAATTCTTTAGAGGAAGCAAGTGAAGAGAACCAGCTGACA AATTCTTTGGAGGAAGCAAGTGAAGAAGGCCAATAGAATCTGACGGTAAGAATTACTGTATGGTATTCTTCAATCCTTTT CACCATTTTATTACTATTTATTGTGCATAGCGAAAAATGAGAAGTCATATGTAGAGCACATGATACAAGAAGATGTTTAC TTAACCTATCTTGTTCTCTCTCTTTCTTAAGTGATTATATTTGTTTCTTACAAATAAGTGTGACACTTGAAAAAAATTGA TGTCTCGTTTGCTTAGAAAAGCAAATAAGGTCTGGGGTGAAATAAAAGTTCTCAAACTAAGATCCTATAGAATTTATAAT ATGGCGACATTTAAAATATGCTCATCTTTTCCAACAGGCCTTGAAGGGTGCAAGAGTGCTCTACACAGTTATGCTTGATG TCCTGGCTTGCCTTCAAATGATGATATTGCAAGAAGAGAGCTTAACATTTGGAAGAGAATGTTATTTATTCAATGTCAAA TCATCTGGCTTCAGTAGTGTTCACCTAGTGGTGATTTCAGTTAGTTGGAGTTGAGGCAGGCTTTTGAACTTAATTTAATT TCATAGTATGAGTTAGGAAATTCAAGCTTGAGTTAGTACATGCTTTTAGCATCCTTATCTTTTTTCCTCTTAATATTATT ACTGTGGCTGCAGTTTGTTTCTCTTGTTGTCATTTATATGGTTTTCGTTTTCAATCTCTACTTATTTGTTCTGTACTTAG GTGCCACTTCTCCAAAATGTTACCCGACTTTTGTATGATACTGTGATGTTAGCCTTTTGGGCATTTTGACTTGAAGTTGT GGTGATATTATTGATCTTAATCAAATTGCAACTTATCAAGTTTTGATATGGATTAATCTTGCATCTGGTCAGTTTAACTT CTGAATCACACATTCACACTGATGTTCATATGGT
CDS sequence (LotjaGi1g1v0518900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGAACAGCCACAAACTAGCACACAAAGCCTCTCTCTGTTTTCCAATCTCCCTCACCACTTGTTCGTTCAAATTCT GCTTCGGTTACCGGTGAGATCTCTCATCCGCTTCAAATCGGTGTGCAAATCGTGGCGGTCTCTCATCTCCGATCCCAAAT TCGGTAAATCCCATTTTGACCTAGCTGCTGCACCCACTCACCGTTATCTCGTTAGAAAAATCAACGATTCTTCTGAAATT GAATCCCTAGATTTCAATGCATCACTTCACGATGAATCTTCTGCTATAGTGAAACTCACATTACCGTTTCCTTCACCCCT TGTTGAAACCATCATCGATACTCGTTTTCATCAAAACCCTATCTATATTCTGGGTTCCTGCAGAGGGTTTGTGGTCGTAG CATATGAACGAGGCTCCGTCGTTGTTTGGAATCCATCAACAGGTCTCCAGAAACCAATTCCAGACATATCTGGTGAGGTG ACTTTGGAATTTCTAAATGGGTTTGGGTATCACACATCAACTGATGATTACTTGCTAGTTTGTGTGAGTTTGATTCCTTT GGAGTATCTTCTTGAACAGATAGATGACTATCGTAATCACATTTCGTATTTTTCGTTGAAAACAAATTCCTTTACTGAAA TGGATGATTATCAGGCTGATGTTCAATATGTGGATATTGGTAATTTTGATTCCAGAGTTGGGTCCTATTTGAATGATGCT TTGCATTGGCTGGTTATCTCTTTTGATACCAAGCATCAAGTGATTATTGCATTTGATTTGGAAGAGAGGACTTTGTCTGA GATTCCTATATCACATCATTTAGCCAAGGAGTTAACATTTACCCAATATTATTTGAGGGAACAATATTATTTGAGGGTCA TGGGAGAATGTCTCAGTCTGTGTTACCCGGGTAACACTAACATGACTTCGAAGGCTGAGATCTGGATGATGAAAGAATAT AAAGTGCAGTCATCTTGGACCAAGTTGTTTGCTTTTTCTACTTGTGACGTTCCCCGCAATGTCTTTTTTCCAAAATGTTT CACCAACCATCATGGAGTTTTTGGATCAAATGGCTCTGAAAGATTGATGATACTTAATGACAAAGGACGGCTGCTTGATC AGCATACACTTTTGCACTTACGTAATAAATATCAATATATTCAAGTAGGTTGTGGTATGTATAGGGAGAGTTTACTATCA CTCCCTAATGACTTTGAGGAAGCAAGTGAAGATAACCAGCTGACGAATTCTTTAGAGGAAGCAAGTGAAGAGAACCAGCT GACAAATTCTTTGGAGGAAGCAAGTGAAGAAGGCCAATAG
Protein sequence (LotjaGi1g1v0518900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNEQPQTSTQSLSLFSNLPHHLFVQILLRLPVRSLIRFKSVCKSWRSLISDPKFGKSHFDLAAAPTHRYLVRKINDSSEI ESLDFNASLHDESSAIVKLTLPFPSPLVETIIDTRFHQNPIYILGSCRGFVVVAYERGSVVVWNPSTGLQKPIPDISGEV TLEFLNGFGYHTSTDDYLLVCVSLIPLEYLLEQIDDYRNHISYFSLKTNSFTEMDDYQADVQYVDIGNFDSRVGSYLNDA LHWLVISFDTKHQVIIAFDLEERTLSEIPISHHLAKELTFTQYYLREQYYLRVMGECLSLCYPGNTNMTSKAEIWMMKEY KVQSSWTKLFAFSTCDVPRNVFFPKCFTNHHGVFGSNGSERLMILNDKGRLLDQHTLLHLRNKYQYIQVGCGMYRESLLS LPNDFEEASEDNQLTNSLEEASEENQLTNSLEEASEEGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 92 | 90 | 6.6E-11 | – | |
| SUPERFAMILY | 11 | 70 | 60 | 1.09E-16 | ||
| ProSiteProfiles | 12 | 58 | 47 | 11.14 | ||
| Pfam | 14 | 56 | 43 | 1.6E-9 | ||
| PANTHER | 17 | 385 | 369 | 4.3E-84 | – | |
| PANTHER | 17 | 385 | 369 | 4.3E-84 | – | |
| SMART | 18 | 58 | 41 | 1.7E-9 | ||
| TIGRFAM | 126 | 348 | 223 | 4.4E-17 | ||
| MobiDBLite | 409 | 439 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0518900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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