Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0519500 |
| Transcript ID | LotjaGi1g1v0519500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0519500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104314821..104317314) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCTTTGTAGCAGCATGGAGAAGAAGGAAACAGAGAACGAGGAGAAGAAACCTAACCTCAACCTCACCGAGTTGATCT CTGAAATGATTGATCTTTCTTTTGATCATGAGAACAAGAAGATGATGATCAACGACAAAGAGAACCAGAATATTGTCGCT CTCCCTGAGGATTTGATTTCACTGATTCTGGTGAGGTTACCTGTTCGATCTCTCCTCCGCTTCAAATCGGTGTGTAAGTC GTGGCTGTCTCTGATTTCAAATACCCAATTCGCAAAATCACATTTTGATCTAGCTGCTACACCCACTCACCGTTTTCTTA TCAAAAGAATCAATGGTGGTTATGAAATTCAATCATTGGATTTTGAAGCATCGCTTCGCGACGATTCTGCTGTGGTAAAC CTCAAATTCCCACCCTACTATGACCCTTTTTTTCTGGCTTTAGGTTCTTGCAGAGGTATTTTTCTGCTAGCAAAAATTAT GGGTCCATCAGCTGGTGATCTCATTGTGTGGAACCCTTCAAATAGTTTCCACAGAGAAATTCAAGCAAGCTATGACTATG ATGACTGTGATTCATGGTATGACACATCATCAACCTGTGTCCGCCAAGGAATTCCTTGTTATGTTGGTTGTTTTTTGACT GGTTTTGTGTATGGTTTTGGATATGATCATTCCAAAGATGACTATTTGCTTGTTTTGTTACGATTTCATAAACATGATGG ACCTGAAATGACTACATTTTTGCGGCCTCAGATTGAGGTTTTGTCTGTCAAAACCAATGTGCCCTCCTTCATTTATGGCG AAGAGTTTAAATACGTGGAGCTTGGAGGTGAGTCCTCATCTGGTTTGTTCTTGAATCAGTCCCTGCATTGGTTGGTCAAG TACAAGGCTACAGGGCTTCATGTAATCATTGCCTTTGATTTGGTTGAGAGAAGTTTATCGGAGATTACTTTGACACCTGA TTTGGCACATGAATTGGCAACACTTGAAAGTTATCACTTAAAGGTACTGGGAGGATGTCTTGGTATGTGTTGTAATGGTA TTGGTGATGACCATGAAATGACTGGAATATGGGTCATGAAAGAGTATAGAGTGCAGTCTTCTTGGACTAGATCTTTTGTT CTGCCTGGGTATGACTTTTTACCAATATGCTTCACTGAAGGTGGTGGTGTTTTTGGATCAGATAGCAGTGAAAAATATGA GAAATTTGATGATAACGGAGAACTGCTGGAGGATCACACATATGGACAAGAGAACGAAGATGCTTTTGAGTATTTTGAAA TGTACAGGGAGACCCTACTAACACTCCCTAGTGAACTACCATGACCTTGAGGAAGCACATGAAGACAACTGTAAGTACCT AGAAACAAGGAAAATTAGTAAACAATGTTCTCCAACTCTTTTTATTTATTTGTTATAGTTCATCTTGCATTATGAAAAAC TAAAAGCTATATGCAGAATACCTAATACATGAAAATGATACCTTAAACCTATTGTTGTTCTCTCCTTTTCTAAAGAATAT TTCCTTTTTGTTAAAAAATGATAATTGAAATTGCAAGGAAATATGAGATTTGGTGCTGGATTGAATTCACTGAAAAATAT TTGATGCCTTGACTACTAGAAACATTAAAGGCTATTTGCCATATGAACTCATGTTTCTCCAAGCCACACAGTAGCTAGAA TATTTTATACATTTTCCTTGATGTCATACTCCTAGTTTTTCTTCAAATGACGATATGGCGTTAGAGAATGTCATATGTAT CATCCGATAAACAATCTAGTGTGAATGCATCACTAGTGTATGTTTAAGTGGGAATTTGTATTTCAGTAAAACTGGAGTTT GAAGCATACTTTCATATTTAATTATGCTTCGAAGTAGGATTTATCAAACTCTAGTTTTAGTAAGTGCATGTTAGTTAGCA TCTTTTTTGTTTTTTTTTTCTCTAGGTATTGTTATTGTGCTTACACTTTATTTCTCTTACCCTATTTTACATGGTTTTCA GGTTACTTACTTAGGGTGCCTTTTCTGCAAGCTATTGTTCTCTTGCATCCATTGGTGTTGAAGTTGTGAATATATTGCTG ATCTTAACCATATGAGAGCTAAAAGATGGTGATGGAGTAATGGGGTGAAATTGCTGAAACTAGTCAAGTTTTGATCTTCA TTGATCTTGCATGTAATCGATTTAACCGCTTCATCACTCTGATCTAGAGTTGATTAGGTTTTCTATGATAGTTCCTGCAT ACTTTGCAGTTTCTGTCAGTAGCTTGTATTTTCTTGTATTCAATTTCTAAAATAGGGAAAACTTTCATTGTGCTAAACCC CTTTAGATAAGTGGTGTAGAATCCTTGGAGCATTTGATGAATGTTTGATTTCTCAAGAGAGTTTGGAGCAAAATGGTCAT TGGTATTTTTCCGTGAACAAAGATGCTTATGGTTGTAGTTTAATGCTTGAACTGAGACTTCTTAATGAAACATGACTTGA GCAGTGCATCAAAC
CDS sequence (LotjaGi1g1v0519500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGAAGGAAACAGAGAACGAGGAGAAGAAACCTAACCTCAACCTCACCGAGTTGATCTCTGAAATGATTGATCT TTCTTTTGATCATGAGAACAAGAAGATGATGATCAACGACAAAGAGAACCAGAATATTGTCGCTCTCCCTGAGGATTTGA TTTCACTGATTCTGGTGAGGTTACCTGTTCGATCTCTCCTCCGCTTCAAATCGGTGTGTAAGTCGTGGCTGTCTCTGATT TCAAATACCCAATTCGCAAAATCACATTTTGATCTAGCTGCTACACCCACTCACCGTTTTCTTATCAAAAGAATCAATGG TGGTTATGAAATTCAATCATTGGATTTTGAAGCATCGCTTCGCGACGATTCTGCTGTGGTAAACCTCAAATTCCCACCCT ACTATGACCCTTTTTTTCTGGCTTTAGGTTCTTGCAGAGGTATTTTTCTGCTAGCAAAAATTATGGGTCCATCAGCTGGT GATCTCATTGTGTGGAACCCTTCAAATAGTTTCCACAGAGAAATTCAAGCAAGCTATGACTATGATGACTGTGATTCATG GTATGACACATCATCAACCTGTGTCCGCCAAGGAATTCCTTGTTATGTTGGTTGTTTTTTGACTGGTTTTGTGTATGGTT TTGGATATGATCATTCCAAAGATGACTATTTGCTTGTTTTGTTACGATTTCATAAACATGATGGACCTGAAATGACTACA TTTTTGCGGCCTCAGATTGAGGTTTTGTCTGTCAAAACCAATGTGCCCTCCTTCATTTATGGCGAAGAGTTTAAATACGT GGAGCTTGGAGGTGAGTCCTCATCTGGTTTGTTCTTGAATCAGTCCCTGCATTGGTTGGTCAAGTACAAGGCTACAGGGC TTCATGTAATCATTGCCTTTGATTTGGTTGAGAGAAGTTTATCGGAGATTACTTTGACACCTGATTTGGCACATGAATTG GCAACACTTGAAAGTTATCACTTAAAGGTACTGGGAGGATGTCTTGGTATGTGTTGTAATGGTATTGGTGATGACCATGA AATGACTGGAATATGGGTCATGAAAGAGTATAGAGTGCAGTCTTCTTGGACTAGATCTTTTGTTCTGCCTGGGTATGACT TTTTACCAATATGCTTCACTGAAGGTGGTGGTGTTTTTGGATCAGATAGCAGTGAAAAATATGAGAAATTTGATGATAAC GGAGAACTGCTGGAGGATCACACATATGGACAAGAGAACGAAGATGCTTTTGAGTATTTTGAAATGTACAGGGAGACCCT ACTAACACTCCCTAGTGAACTACCATGA
Protein sequence (LotjaGi1g1v0519500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKKETENEEKKPNLNLTELISEMIDLSFDHENKKMMINDKENQNIVALPEDLISLILVRLPVRSLLRFKSVCKSWLSLI SNTQFAKSHFDLAATPTHRFLIKRINGGYEIQSLDFEASLRDDSAVVNLKFPPYYDPFFLALGSCRGIFLLAKIMGPSAG DLIVWNPSNSFHREIQASYDYDDCDSWYDTSSTCVRQGIPCYVGCFLTGFVYGFGYDHSKDDYLLVLLRFHKHDGPEMTT FLRPQIEVLSVKTNVPSFIYGEEFKYVELGGESSSGLFLNQSLHWLVKYKATGLHVIIAFDLVERSLSEITLTPDLAHEL ATLESYHLKVLGGCLGMCCNGIGDDHEMTGIWVMKEYRVQSSWTRSFVLPGYDFLPICFTEGGGVFGSDSSEKYEKFDDN GELLEDHTYGQENEDAFEYFEMYRETLLTLPSELP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 32 | 121 | 90 | 2.2E-8 | – | |
| PANTHER | 41 | 426 | 386 | 1.1E-75 | – | |
| PANTHER | 41 | 426 | 386 | 1.1E-75 | – | |
| ProSiteProfiles | 43 | 89 | 47 | 11.246 | ||
| SUPERFAMILY | 46 | 108 | 63 | 6.41E-14 | ||
| Pfam | 49 | 82 | 34 | 5.5E-7 | ||
| SMART | 49 | 89 | 41 | 9.0E-7 | ||
| TIGRFAM | 211 | 373 | 163 | 7.3E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0519500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…