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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0519800 |
| Transcript ID | LotjaGi1g1v0519800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0519800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104365275..104367800) extracted from Lotus japonicus Gifu genome v1.2.
GACGAGGGAGCCATAACCATTGCCATTTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGAACTAGTAACCAAAACCCT AACACATTACACACTCTCTTCTCTTCTCTTCTCTTCTTCCTCATTTCTGCACCAAAATCTTCTTCCGCCGCCACGCCATT GTCACCGCCATACTTCACCGAGCTTCCATTCGCGCCACCTCATTTGCTACTGTAATATTGAAGAAGAAGCATGAAGAACT ATATGAAGGAGATTGAGAAGCTGAAGGAGAACCCGAGAATCACCGCTCTTCCTCACGAGTTGATTGTTGAAATCCTGTTG AGGCTACCGGTGAGGTCTCTCCTCCGCTTCAAATGCGTGTGTAAGAAGTGGCTTTCTACCATTTCTGATCCGCAATTCTG TAAATCCCATTATGACCTAGCTGCTGCACCCACTCACCGTCTTCTTAACCTTCCCGAAGGAATCGCTGATGTAGTTGAAT CATTTGATGTAGATGCATCGCTTAACGATGATTCTGCTGTTGTAAACCTCAAATTCCCACCCTACACTGCCCCCTTCTTT CAAACCATAGGTTCTTGCAGAGGGTTTGTTCTGTTAACCAAGATGATGCATCCAACAGGTGATCTCATTTTGTGGAACCC TTCAACTGCTGCCCACAGAGAGATTCCAGCCACCTATGCTGACTGGAATTCATGGTATGATCCTTCAACCCGTTTCCGCC AAGGAATTCCACCTTATTTTGCTCATTTCATGTTTCAATTTCTCTATGGCTTTGGGTATGACCAGTTGAAGGATGAATAT TTGCTTGTTCTAATCCGTTTGGAAAATCGTCCTGAACCTCAAGTGATACACTGTAGCAGTAACAGCTTCATGGTTAGTGT GCGATATGGTGGACCTGTAGTGAAGTCTTCACGGCCTCGAATTGAGGTTTTATCTTTGAATACCAATGTACCCTCCTTTT ATTATGATGATGTTGAATATCTGGATCTCGGATACGAGTCCAATTGTGGGATTTTCTTGGATAAGTCTCTACATTGGTTG GTTAAATCAAAGGCTACACAGCTTCATGTAGTTCTTGCTTTTGACTTGGTGGACAGAAGCTTATTGGAAATTCCTCTTTC GCCTGATTTGGCAGCAGAATTGGCAATTTATAAAAATGGTTATTTGAGGGTGCTGGGAGGGTGTCTTAGTGTGGGTTACT CAAGTGGAGGCGATGGCCCTGAAGTGGCTGAGATATGGGTCATGAAAGATTATAAAGTGCAGTCTTCTTGGACTAAATCT TTTGTTTTGACATTTCTTGACCTTGTTGACGGCGTGCACTTTTTTCCAATGTTTTTCACCAGAGGTGGTGGGATTTTTGG AGCAGATGAGAATGGGACACACTGGAAATTTAGTGATGATGGTAAAAAGCTCGAGAATTACTCAAGTGGACAGGAAGGCG CGTTAAGAGTTTGTGACATGTATAGGGAGAGCATACTAACACTCCCTGAACTAGCATTGCCTGATGACTTTGAGGAAGAA AATGAAGATGCATGACAGTAAGCAATTATCTCCACCCCTTTTTACCTTTTTGTTCTAATTCATCTTTCCTTATGTAAAAA TAAAAACTATATGCAGAGTGCCTGATACATGAATGGAAAATGGCAAGGAAAGATGAAAACGTTTGATGTCTGTTTACTCA GAAAAGCCAAAGGCAATTTGAGTGGAAAAGTCTTTGGACTAAAACAGTTAGTATTTCCTATTAGATTTTACTGTACTATT TCAAAGATAAAATCTTATAAAATATCAAATGACTTTTACAATACATATGTTTATGTTTCTTGTGAGCCACCAAATATTAA AGAATATTTTATACATGATGTTCTAGTTTTTTTTTAAATGATGATACTGCTAGTCTGCTAGTGTTAGAGAATGTCCTATA TGAATATCTCTCACTTCTCTCTCCTAGTCCTAACTCTCTCAAAAGATGGAGGTGTAAATGTGTGTGAAGAAAACATTTTC CTGATTTCAGTAAGATTGGAGTTTGAATGGAATTTTAAATCTAACTATGCTTGGAAGTAGGATTTGTCAAATTTTAGTTG GAGTTAGTACATGTTATTTAGTATCTTTTTGTCTTTTTCTTCTAGGCATTGTTAATCTGTGACCCTCTTTTACATGGTTT TCAGTTAACTACTTAGGGTGTCTTCTCTGAACAACAATTCCTGATTTTAATAAGCTAATATGCTGATTTTATTGAAGTTG TGCAGATATTTTTGAACTTAGCTATTTTGGAGGCTTGGAGCTTAAAGGTGGTCTGGAGCGAAAGGGTTGAAACTAACCAA GTTGTAATATGCATTGAGCTTGTTTGTAATTTGATTTAACCATTTCATCACGATGATCTAGTGCTGATTAGATTTTCTGT CGTAGTTTCATGATGTTCTTAAAGATACTCTGTAGCTTTTACGACAATTAGGACCTTTTGAATGAGTTCTTACATGATTA GTTAGTGCTAACTAACAGATTAATGGACCCATTTGCTTAAAGTGGC
CDS sequence (LotjaGi1g1v0519800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAACTATATGAAGGAGATTGAGAAGCTGAAGGAGAACCCGAGAATCACCGCTCTTCCTCACGAGTTGATTGTTGA AATCCTGTTGAGGCTACCGGTGAGGTCTCTCCTCCGCTTCAAATGCGTGTGTAAGAAGTGGCTTTCTACCATTTCTGATC CGCAATTCTGTAAATCCCATTATGACCTAGCTGCTGCACCCACTCACCGTCTTCTTAACCTTCCCGAAGGAATCGCTGAT GTAGTTGAATCATTTGATGTAGATGCATCGCTTAACGATGATTCTGCTGTTGTAAACCTCAAATTCCCACCCTACACTGC CCCCTTCTTTCAAACCATAGGTTCTTGCAGAGGGTTTGTTCTGTTAACCAAGATGATGCATCCAACAGGTGATCTCATTT TGTGGAACCCTTCAACTGCTGCCCACAGAGAGATTCCAGCCACCTATGCTGACTGGAATTCATGGTATGATCCTTCAACC CGTTTCCGCCAAGGAATTCCACCTTATTTTGCTCATTTCATGTTTCAATTTCTCTATGGCTTTGGGTATGACCAGTTGAA GGATGAATATTTGCTTGTTCTAATCCGTTTGGAAAATCGTCCTGAACCTCAAGTGATACACTGTAGCAGTAACAGCTTCA TGGTTAGTGTGCGATATGGTGGACCTGTAGTGAAGTCTTCACGGCCTCGAATTGAGGTTTTATCTTTGAATACCAATGTA CCCTCCTTTTATTATGATGATGTTGAATATCTGGATCTCGGATACGAGTCCAATTGTGGGATTTTCTTGGATAAGTCTCT ACATTGGTTGGTTAAATCAAAGGCTACACAGCTTCATGTAGTTCTTGCTTTTGACTTGGTGGACAGAAGCTTATTGGAAA TTCCTCTTTCGCCTGATTTGGCAGCAGAATTGGCAATTTATAAAAATGGTTATTTGAGGGTGCTGGGAGGGTGTCTTAGT GTGGGTTACTCAAGTGGAGGCGATGGCCCTGAAGTGGCTGAGATATGGGTCATGAAAGATTATAAAGTGCAGTCTTCTTG GACTAAATCTTTTGTTTTGACATTTCTTGACCTTGTTGACGGCGTGCACTTTTTTCCAATGTTTTTCACCAGAGGTGGTG GGATTTTTGGAGCAGATGAGAATGGGACACACTGGAAATTTAGTGATGATGGTAAAAAGCTCGAGAATTACTCAAGTGGA CAGGAAGGCGCGTTAAGAGTTTGTGACATGTATAGGGAGAGCATACTAACACTCCCTGAACTAGCATTGCCTGATGACTT TGAGGAAGAAAATGAAGATGCATGA
Protein sequence (LotjaGi1g1v0519800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNYMKEIEKLKENPRITALPHELIVEILLRLPVRSLLRFKCVCKKWLSTISDPQFCKSHYDLAAAPTHRLLNLPEGIAD VVESFDVDASLNDDSAVVNLKFPPYTAPFFQTIGSCRGFVLLTKMMHPTGDLILWNPSTAAHREIPATYADWNSWYDPST RFRQGIPPYFAHFMFQFLYGFGYDQLKDEYLLVLIRLENRPEPQVIHCSSNSFMVSVRYGGPVVKSSRPRIEVLSLNTNV PSFYYDDVEYLDLGYESNCGIFLDKSLHWLVKSKATQLHVVLAFDLVDRSLLEIPLSPDLAAELAIYKNGYLRVLGGCLS VGYSSGGDGPEVAEIWVMKDYKVQSSWTKSFVLTFLDLVDGVHFFPMFFTRGGGIFGADENGTHWKFSDDGKKLENYSSG QEGALRVCDMYRESILTLPELALPDDFEEENEDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 156 | 156 | 1.8E-11 | – | |
| SUPERFAMILY | 8 | 75 | 68 | 6.28E-17 | ||
| PANTHER | 12 | 416 | 405 | 4.9E-76 | – | |
| PANTHER | 12 | 416 | 405 | 4.9E-76 | – | |
| ProSiteProfiles | 14 | 64 | 51 | 11.034 | ||
| Pfam | 18 | 57 | 40 | 8.5E-9 | ||
| SMART | 20 | 60 | 41 | 1.8E-8 | ||
| TIGRFAM | 178 | 376 | 199 | 1.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0519800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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