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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0520800 |
| Transcript ID | LotjaGi1g1v0520800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0520800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104530708..104532980) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTATCGATTTGACTACTCCACATGTTTATTATTCAAGTGAGTTAAGATTAAGAGTAGGCAGAGGCTCTTTGAACG GCTAGATTCCTTGGGTTTCTGCAATTGAGTAGTTAAGGGTGGTGAAATGTGATTGGTGGATTCCACGGTGGTATTCAATT GAGTTTATAATGGGTCTTTTTGTTCATCGTTCAAATTGAGCTTCACTCACTGGAGAACAAAATTTTAGCGAAGAAAGATG AACGAACAACAAAAATGTAGAACGGAGAGCCCCTCTCTGTTCTCCTATCTCCCTGACGAGTTGATTCCAGCGATTTTGGT GAGGTTACCAGTTCGATCTCTACTCCGTTTCAAATCAGTGTGCAAATCGTGGCATTCTCTCATTTCCGATCCCAAATTTG GTAAATCTCACTATGACCTAGCTGCTGCACCCACCCACCGATGTCTTACAAAAGGTAATGATTCTGAAATTGAGTCCATA GATGTAGATGCAGCATCACTTCACAATTCTGAGTCATGTGTTGTAAAACTCAAATTTCCGCTTCCACCACCCCGTATAAG ATATTGGGTTCATGGTCCTAACCTCCCTAGTGATGTTGAGTTTGTGGGTTCTTGTAGAGGGTTTGTTCTTGTAGCCTATC CACAGGGTGATGTTTTTGTATGGAATCCATCAACTGGAGAGCAGAGAAGAATTGCAGACGACCTTGATGAGATGATTGAT TTGTATCCAATTGGTTTTGGGTATGACAGATCAGCAGATGACTACTTGCTAGTGCTTATGCAAGTGATTCATTTGAACTT TTATGATAGCTATCCAGACGAAGTAGCTAATGTGCATACTATTATTCGCCTTTTTTCCATGAAAACAAATTCCTGGTTTG ATCAGGAGGGTACTTATGCTCAATATGTGGATATGGGTTCTGCTGATCTCAAAATTGCAGCCTTCTTGAATGACGCCCTG CATTGGTTGGTTACCTCTTATGAAACCAAACTTCATGTAATTATTGCCTTTCATTTGGTACAAAGGAATTTGACTGAAAT TCCTTTGCCACAAGTTTTAGTTACGGAATTAAAAAAGAAATTTTGGTATTCTTTGAGGGTTATAGGAGAATGTCTCAGCC TATGTTACCCGGGTTACCCGGGTATCAAAGATTCAACGGCTGAGATTTGGATGATGAAAGACTATAAAGTGCAGACATCT TGGACTAAGTTATTTGTTTTTTCTACTTGTAACCTTCCCCGCAATGCCATTCATCCAATATGTTTCACCAAACATGGTGA ATTGTTTTGTTCATACGGATCTGGAGGATTAATGATAGCTGATGACAAAGGATGGCATCTTCTTGATGAGAGCACAAAAT GGCCCGAACCCCATATGGTGTTTGATGAGGATAGAGAGTGTATGCTACCCTATGGTTTGTATAGAGAGAGTTTACTGTCA CTTCCCAATGACTTTCAGCAAGAAAATGAAGATGACCAACTCATGATTTCCTTGGTGGAGACAAGTGAGGATGACAAATA GTATCTGGCAATAAGAATTAAGGTATGCAATTGTTCAATCTTTTTCACCTTTTTATTACTATTTATCGTGCATAACAAAA AAATGAGAAGTTATATGTAGAACACATGATACAAGATTCTTAACCTATCTTGTACTCTCTCGTTCTTAATTGATTACATT TCTTCATAAATAAGTGTGAAACCTTAAATTGCAAGGAAATATGAGGTTTGGTGGTAGATTGGATTTATTAATTGATAGGG AAAACATTTGATGTCTAGTTTGTTGAGAATTTTGGTGGAAAATTATATAAGAAGAACAACTTAGGTCTGGGGTGAAATAA CAGTTCTCAAACTAAGATCCTACAGAATTGATAATATGGTAACATTTAAAATAAACTCATTTTTTCCCGCAGGCCTTTAA GGGTGCAGGAGCGCTCTACAGAGCTATGCTTGATGTTTTGGCTTTCCTTCAAAAGATGATATTGCGAGAAGAGAGCTTAG CATTTGGAAGAGATTGTTATTTATATAATGTTAAATCATCTTGTTTCAATAGTGTTTTCGTAGTCGTGTTGGAGTCGAGG CAGGCTTCTGAACTTTATTATATTTTAAAGTATGGCTTAGGAAATCCAAGCTGGAGTTAGTACTTAGTACATGCTATTTA GCATGTTTATCCTTTTTCCTCTTAATAATGTTATTGACTTATTGCAGTTTGTTTCTCTTAGTGTCGCTTACATGATTTTC AGAATCATTGTCTACTTATTTGTCATGTGTTTA
CDS sequence (LotjaGi1g1v0520800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGAACAACAAAAATGTAGAACGGAGAGCCCCTCTCTGTTCTCCTATCTCCCTGACGAGTTGATTCCAGCGATTTT GGTGAGGTTACCAGTTCGATCTCTACTCCGTTTCAAATCAGTGTGCAAATCGTGGCATTCTCTCATTTCCGATCCCAAAT TTGGTAAATCTCACTATGACCTAGCTGCTGCACCCACCCACCGATGTCTTACAAAAGGTAATGATTCTGAAATTGAGTCC ATAGATGTAGATGCAGCATCACTTCACAATTCTGAGTCATGTGTTGTAAAACTCAAATTTCCGCTTCCACCACCCCGTAT AAGATATTGGGTTCATGGTCCTAACCTCCCTAGTGATGTTGAGTTTGTGGGTTCTTGTAGAGGGTTTGTTCTTGTAGCCT ATCCACAGGGTGATGTTTTTGTATGGAATCCATCAACTGGAGAGCAGAGAAGAATTGCAGACGACCTTGATGAGATGATT GATTTGTATCCAATTGGTTTTGGGTATGACAGATCAGCAGATGACTACTTGCTAGTGCTTATGCAAGTGATTCATTTGAA CTTTTATGATAGCTATCCAGACGAAGTAGCTAATGTGCATACTATTATTCGCCTTTTTTCCATGAAAACAAATTCCTGGT TTGATCAGGAGGGTACTTATGCTCAATATGTGGATATGGGTTCTGCTGATCTCAAAATTGCAGCCTTCTTGAATGACGCC CTGCATTGGTTGGTTACCTCTTATGAAACCAAACTTCATGTAATTATTGCCTTTCATTTGGTACAAAGGAATTTGACTGA AATTCCTTTGCCACAAGTTTTAGTTACGGAATTAAAAAAGAAATTTTGGTATTCTTTGAGGGTTATAGGAGAATGTCTCA GCCTATGTTACCCGGGTTACCCGGGTATCAAAGATTCAACGGCTGAGATTTGGATGATGAAAGACTATAAAGTGCAGACA TCTTGGACTAAGTTATTTGTTTTTTCTACTTGTAACCTTCCCCGCAATGCCATTCATCCAATATGTTTCACCAAACATGG TGAATTGTTTTGTTCATACGGATCTGGAGGATTAATGATAGCTGATGACAAAGGATGGCATCTTCTTGATGAGAGCACAA AATGGCCCGAACCCCATATGGTGTTTGATGAGGATAGAGAGTGTATGCTACCCTATGGTTTGTATAGAGAGAGTTTACTG TCACTTCCCAATGACTTTCAGCAAGAAAATGAAGATGACCAACTCATGATTTCCTTGGTGGAGACAAGTGAGGATGACAA ATAG
Protein sequence (LotjaGi1g1v0520800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNEQQKCRTESPSLFSYLPDELIPAILVRLPVRSLLRFKSVCKSWHSLISDPKFGKSHYDLAAAPTHRCLTKGNDSEIES IDVDAASLHNSESCVVKLKFPLPPPRIRYWVHGPNLPSDVEFVGSCRGFVLVAYPQGDVFVWNPSTGEQRRIADDLDEMI DLYPIGFGYDRSADDYLLVLMQVIHLNFYDSYPDEVANVHTIIRLFSMKTNSWFDQEGTYAQYVDMGSADLKIAAFLNDA LHWLVTSYETKLHVIIAFHLVQRNLTEIPLPQVLVTELKKKFWYSLRVIGECLSLCYPGYPGIKDSTAEIWMMKDYKVQT SWTKLFVFSTCNLPRNAIHPICFTKHGELFCSYGSGGLMIADDKGWHLLDESTKWPEPHMVFDEDRECMLPYGLYRESLL SLPNDFQQENEDDQLMISLVETSEDDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 11 | 64 | 54 | 3.53E-16 | ||
| ProSiteProfiles | 12 | 62 | 51 | 11.432 | ||
| Pfam | 15 | 56 | 42 | 1.4E-9 | ||
| PANTHER | 16 | 368 | 353 | 4.2E-80 | – | |
| PANTHER | 16 | 368 | 353 | 4.2E-80 | – | |
| Gene3D | 16 | 54 | 39 | 3.5E-10 | – | |
| SMART | 18 | 58 | 41 | 9.1E-9 | ||
| TIGRFAM | 124 | 352 | 229 | 6.3E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0520800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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