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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0521200 |
| Transcript ID | LotjaGi1g1v0521200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT5G15710.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LFV5|FK111_ARATH F-box/kelch-repeat protein At5g15710; TrEMBL-Plants: tr|M9RSD2|M9RSD2_9FABA F-box/kelch-repeat protein; Found in the gene: LotjaGi1g1v0521200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104562292..104566398) extracted from Lotus japonicus Gifu genome v1.2.
AATTAATAATTAAATAAGTTTAGGGATTTAAAGTGTGCACAATTTTTTTATACATACAAATATGCAATGGTTTTTTTATA GGCAAAATGTTAGTTTTAATAAATTAGTAAATTATTTTCTCCTCAGAGATCGAACCTGCACCCTTCACTCTTTATCTCAC ACAACCCTTATGTCAATTAACTCTTATCACTTGAGTTAAGCCATTTGTTATGTCAGGACACTGATGAGACTTTCGCCTCT CTTTATGCTCATGTAGTCTAGTGTTGTTTTGCTCTTCGGGGCCTAGCCCCTCCCTGTTAACAAAAAAAAGGATAGATAAA TAGTTAGATTCCTTAAGCATTTAATCGAAAGTTCAATCCTTGACGTGGCGATAAACTACTGATTAGCATTGTGGATCTGT TCGCAGCAGAACACAACAGGAGTGCAGGACCACAATAAGTACCACGTAGTAGTCTTGAATTTTGTTGTTGCCTTTGTCAA ACACTGACGAAGTAAATCAAAATCCAAAGAAAGATAGACTCTAATCTGAAGCCAAGTTACCTTGTTTCTTCTAAGAATCT CTATCCTTCAAGCTCCAGCAATTTTTTTTCTTCTTCTCATCAATGGTAACTTCACGGTTTGAAAATCTCAAGGTAATTTC ATTCATCACCCCACCATTGATAGAGTCTGCTGTTCTCTTCTCTCTGATTAAAAAAACAATCTTTTCTTGCTGAATTATTC AAATGCTCATCTGGGTCTGGAAATATTTATCATATTTGACCGTGTATGAGAATTTTAGATCTTGATCTGGGTTAACTATT ATGGGCTGCTTCAGAATTTTCATGCTTTGGGGTATCAGTGATTGAAGCAATATCTGTGAGTATAATCTTTTGATGGTTTG AGGCTGGAAATCTGGAATAGGAGTGTGAATCTGGATATTTGGTTGATTTGGGGTTTTGAGGAATTAGAGAACATGGATTG TATTGGGCATTCTTCTGAATCAGGGTCAGGAGTGTGTATTGTTCAATCAGTAGAAAATGGGGTTTTTGGTGGAGATGGGA GGTTCTGTAAGCAACCTTCTCCTCCAAGGGGTGGTGGGTCTAGGAATACTAGTCCAATGGGTCGCGCAGGGTCCCGGAAC ACCAGCCCTTCGCGGCAGAAGGTTGTTAAGACCAAGCCTCGGGGTTTGGATGAGGAAACACATGCCACATTTGGTAAGAT AGTTCATGTTGATGTTCAGATGGAGGATAACATATGGGCGATGTTGCCTGAGGACTTGTTGCATGAGATCTTAGCTAGGG TTCCTCCGTTTTTGATTTTCCGGCTTCGGTCGGTATGTAAACGGTGGAATTCACTGCTTCAGGACAGTAGTTTTCTCAAG TTTCATTCCAGTGTTCCGTCGCACGGGCCTTGTCTTCTTACTTTCTGGAAGAACTCGCAGATCCCGCAATGTTCGGTCTT CAGCTTGCCCCTGAAGACTTGGTATAGGATACCTTTCGCATTTTTGCCGCAGTGGGCGTTCTGGTTGGTTGGCTCTTCTG GTGGCCTTGTTTGCTTTTCCGGGCATGACGGGCTAACTTTTAAAACCCTGGTTTGTAATCCCCTTACTCAAACTTGGAGG ACATTGCCAAGCATGCATTTTAATCAGCAAAGGCAACTGATAATGGTTGTTGATCGGCTGAACCGGTCATTTAAAGTGAT AGCCACTAATGATATATGTGGTGACAAATCATTGCCTACTGAAGTTTATGACTCGAAGGCAGATAGTTGGTCAGTTCATC AGATGATGCCAGCAGCTAATCTCTGCTCATCAAAGATGGCTTATTGTGACTCGAGATTGTACCTTGAAACCCTTTCACCA CTTGGTTTGATGATGTATAGACTCGACACAGATCACTGGGAACATATTCCGGCAAAGTTCCCGCGATCTTTACTGGATGG ATATTTGGTTGCCGGTACCCAGAAGCGTCTTTTTCTTGTTGGAAGGATTGGCCTGTACAGCACACTCCAGAGCATGAGAA TTTGGGAATTGGACCATGCCAAATCTATGTGGGTGGAGATCAGTAGGATGCCCCCGAAGTATTTCCGCTCTTTGTTGAGA TTATCAGCTGAGAGATTCGAATGCTTTGGGCAAGATAACTTAATCTGCTTCACGTCTTGGAACCAAGGGAAGGGCCTTCT ATTTGATGTGGATAAGAAGATCTGGTCTTGGATCGGTGGGTGTGCTCTTCAGTCATACAACAATCAAGTCTGTTTCTACG AGCCAAGGTTCGATGCTTCTATATACTAAGCTAGAGGCTCATAGTCTTATGACATGATGTCGGATATCCATCAACTCTTA CAAAACAAAGGCTTATCTGTGATTTTTATCTTGACATAATGACATGTTTTCTTTGCTATGAGATTCTCTCTAACCATTCT ATTTGATGTTACTTCACAATGGGCTGATATTGTATATCTTACAAATTATTTCAAAGAGAATGCTTGATTGTCAATATCGG TTTAGCTCCATAGACAGATTTTGTGAATGGAATTGAAAGAGGCAAGAGGCAGTGGTGACAATGTTAGTGGGATCTGCCCC TGATGTAGACTTCTCATGAAAGGTTATGACCTTATACATAACTATTGGAATGCTTAAAAGGGGGTACTGGGATAATGGTG TTCAGGGTACGTTTTTAACTTTCAGAAGACATTTTCTTCCTTGAGCATTACCCCTTGAAAATGCACAGGGCTTTGTAATT GCACATTGTAAACTATTACTTCTTCAATGTCACTGGGTTATCGGTGTAATGTAACTGTTTTAAATCTTGTCTTTTAACCT TATGTAACTTTTCATGTAAATGGGTTCTCCCCCCATCTTGCTTTTTGTTTGGCCAAGATACTTCATTAAGAACATGATTT CCTTTGTAGCTTTGCGATCTTGATCAGATTATAGAAATTGATTTGACTTGGCTGTTATTTAAACTGTTTCACCAGTTTCT GATGCAAAGCAGAAACTGTTTGAATTTGAGAGAGGATATTCAAATGAATGCTAGAGTAGTTTTTCTTGCTCATATCCTTG TCTTCTGTTATATTTTCATATGAACGTTTCTCTCCCTCTCACCTGTATGCAGGCATCTAGTGTTCTAAGACAAATTCAGT CAAGAACAAAATATTGGAACAATGGCAAATTCAGTCAACAACAAAATATTGGAACTATGGAAATGTTAATGTGATATAGC TCACACTCCTTTTTTATTTGATTTCCTGAATTCTTATAGATTCTATCATCTCAGTGACTCTGTTCAAACAGACTCTAATG ACATGTGTTTGTGGTGGTATATCATAGCTAGAATGACCAACTGGTTAGGGTGTTGATCTTTGCTTCTCCCTTTTTTTATA ACTAGATTGATTTCAGCATGGGGTAGAATGAGCTGTGCAAAACGTTGGTCAAGCTCAAGTCTATAGGGAACATGAAATAA TTTCTGATATGAAATAAGAACTCAAGCTTCTAAGAGCATAGGTTTTTGACGCTATCAACTCTAATCTCCATACTACAGTG ACCCCTCCCAGAGGAAGAAAAATATAACCAAAACAACAAGAGTTTCTTATTTCTTTTTTTGTTCTCTTGGAGTTTTGTTA CTTTTGTATATTTCTTTTTATTTATTGGTCTAGAGTAGTTCACATATTAGCACTGTTAGTTGAAATATTAGGTAGCCTAA TTAATAGATGATATGGTTCTGATATAGGATATTGATGTGAAGCTGCAAATGCATCTACCTGCCTTATAAGGCCATCTTAG TGTAGTGTGTCATACTCGGTTATGGCTATGATTGGACATCCGTTCACACTCATTGATCGTTAGGACTCTCACGTTGCATT CAACTGGTCGCCAAATACACTTGTAGTGTTCTTCATGTGATTGAGCTGGCTTTGAACCAAAACATGATAGTTTATTTGCA TGACTTGGTGATTGTCAGTTGCCACATATAATTGAAGGAGTAATTATTCATTCATACATATATTTTTCTATGTATGTGTT CTTGTTCAAACTATTGGATTACATTTTGTTATCAGTATCTAACGGTGCTTGGTTATGCGCATTCTAACAAGGACGTGTAG CTATATTTTCATATTCCCTTTCCTTTT
CDS sequence (LotjaGi1g1v0521200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGTATTGGGCATTCTTCTGAATCAGGGTCAGGAGTGTGTATTGTTCAATCAGTAGAAAATGGGGTTTTTGGTGG AGATGGGAGGTTCTGTAAGCAACCTTCTCCTCCAAGGGGTGGTGGGTCTAGGAATACTAGTCCAATGGGTCGCGCAGGGT CCCGGAACACCAGCCCTTCGCGGCAGAAGGTTGTTAAGACCAAGCCTCGGGGTTTGGATGAGGAAACACATGCCACATTT GGTAAGATAGTTCATGTTGATGTTCAGATGGAGGATAACATATGGGCGATGTTGCCTGAGGACTTGTTGCATGAGATCTT AGCTAGGGTTCCTCCGTTTTTGATTTTCCGGCTTCGGTCGGTATGTAAACGGTGGAATTCACTGCTTCAGGACAGTAGTT TTCTCAAGTTTCATTCCAGTGTTCCGTCGCACGGGCCTTGTCTTCTTACTTTCTGGAAGAACTCGCAGATCCCGCAATGT TCGGTCTTCAGCTTGCCCCTGAAGACTTGGTATAGGATACCTTTCGCATTTTTGCCGCAGTGGGCGTTCTGGTTGGTTGG CTCTTCTGGTGGCCTTGTTTGCTTTTCCGGGCATGACGGGCTAACTTTTAAAACCCTGGTTTGTAATCCCCTTACTCAAA CTTGGAGGACATTGCCAAGCATGCATTTTAATCAGCAAAGGCAACTGATAATGGTTGTTGATCGGCTGAACCGGTCATTT AAAGTGATAGCCACTAATGATATATGTGGTGACAAATCATTGCCTACTGAAGTTTATGACTCGAAGGCAGATAGTTGGTC AGTTCATCAGATGATGCCAGCAGCTAATCTCTGCTCATCAAAGATGGCTTATTGTGACTCGAGATTGTACCTTGAAACCC TTTCACCACTTGGTTTGATGATGTATAGACTCGACACAGATCACTGGGAACATATTCCGGCAAAGTTCCCGCGATCTTTA CTGGATGGATATTTGGTTGCCGGTACCCAGAAGCGTCTTTTTCTTGTTGGAAGGATTGGCCTGTACAGCACACTCCAGAG CATGAGAATTTGGGAATTGGACCATGCCAAATCTATGTGGGTGGAGATCAGTAGGATGCCCCCGAAGTATTTCCGCTCTT TGTTGAGATTATCAGCTGAGAGATTCGAATGCTTTGGGCAAGATAACTTAATCTGCTTCACGTCTTGGAACCAAGGGAAG GGCCTTCTATTTGATGTGGATAAGAAGATCTGGTCTTGGATCGGTGGGTGTGCTCTTCAGTCATACAACAATCAAGTCTG TTTCTACGAGCCAAGGTTCGATGCTTCTATATACTAA
Protein sequence (LotjaGi1g1v0521200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCIGHSSESGSGVCIVQSVENGVFGGDGRFCKQPSPPRGGGSRNTSPMGRAGSRNTSPSRQKVVKTKPRGLDEETHATF GKIVHVDVQMEDNIWAMLPEDLLHEILARVPPFLIFRLRSVCKRWNSLLQDSSFLKFHSSVPSHGPCLLTFWKNSQIPQC SVFSLPLKTWYRIPFAFLPQWAFWLVGSSGGLVCFSGHDGLTFKTLVCNPLTQTWRTLPSMHFNQQRQLIMVVDRLNRSF KVIATNDICGDKSLPTEVYDSKADSWSVHQMMPAANLCSSKMAYCDSRLYLETLSPLGLMMYRLDTDHWEHIPAKFPRSL LDGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHAKSMWVEISRMPPKYFRSLLRLSAERFECFGQDNLICFTSWNQGK GLLFDVDKKIWSWIGGCALQSYNNQVCFYEPRFDASIY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 28 | 71 | 44 | - | – | |
| PANTHER | 37 | 437 | 401 | 4.3E-260 | – | |
| PANTHER | 37 | 437 | 401 | 4.3E-260 | – | |
| MobiDBLite | 39 | 64 | 26 | - | – | |
| SUPERFAMILY | 90 | 140 | 51 | 3.43E-10 | ||
| ProSiteProfiles | 92 | 138 | 47 | 11.485 | ||
| Gene3D | 95 | 134 | 40 | 2.8E-7 | – | |
| Pfam | 95 | 137 | 43 | 2.6E-9 | ||
| SMART | 98 | 138 | 41 | 8.4E-11 | ||
| Gene3D | 150 | 430 | 281 | 1.4E-10 | ||
| SUPERFAMILY | 153 | 418 | 266 | 2.35E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0521200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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