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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0524600 |
| Transcript ID | LotjaGi1g1v0524600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT5G15900.2 TRICHOME BIREFRINGENCE-LIKE 19; Swiss-Prot: sp|Q9LFT0|TBL19_ARATH Protein trichome birefringence-like 19; TrEMBL-Plants: tr|I3SWS1|I3SWS1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0524600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105007657..105013632) extracted from Lotus japonicus Gifu genome v1.2.
CTTAATTCTAATATACAAACAACTGTTTATCATGTTACACACACATAAGCAAAACTGCCTAGCTATTCCTCTATATTATC TCCTTATTTCTCTCTTACCTCTTTCTCTCCTTGACTCTCTTTCTCTCTGCTTAACCCCTGATGAAGTTCCAAGCCATGGA ACTTCTCTTTGGCAAAAACACCCCAAAACAAATGATCCCAAAAGTAGCATTACTTGCAGTGTTTGCAATACTTGTCTTCA CCGTCACCCCACTCTCCTACCCTCTGTTCAGATACTCTTCATCCCTAAAAAACAGAGCACCCTCTGTTCCATTACCATCA TTTGATGATTTGAATGAGTCAGCAAGTTTACCCTCAACCTCAGTGAAAAAATGTGACATTTTCACTGGTGAGTGGGTTCC AAACCCAAAGGCTCCTTATTACACAAACAAGACATGCTGGGCAATTCATGAGCACCAGAATTGCATGAAGTATGGGAGGC CAGACTCTGAGTTCATGAAATGGAGGTGGAAGCCAAATGGGTGTGAGCTTCCCATTTTCAACCCTTTTCAGTTTTTGGAG ATTGTGAGGGGGAAATCTTTGGCTTTTGTTGGAGATTCAGTTGGGAGGAATCAGATGCAGTCCATGATTTGCCTCCTATC AAGGGTAAGTACTGAAATTCTATGGTTCTAGCTACAATTACTTCTTCAATTTCTTAGTCTTTTTACAATTGACTCTGAAG TTAAAAAGAATTTTGAGGGAAGCTTTAGGGTAACTTATAGATTTCAGAATTTGTACTAACCGGCCAATGGTTCTTCATTT TGTTTAGTTTTTTACATGTTTCGAAATTCTTACAATTAATTTTGAAGTTAAAATCAATTTTCGGGTGAGATTTTTATGAG TAGTTTATGTGTTTCAGAATTGATTAGGTGAATAAAAAGTTGTTCCAAAACAAGATGTGAGATATTTTCTTTCTTTTTTA ACATCTCATATTAGCTGCTTCATAATTTGTTGTTCAAAATTTAAAGTTGGAACTTGGAAGAGTCAAAATAAGAAACAAAC CTGGCCTTCAATTCGGGATCTACAAGTTAATAAGTCTCGTTTTGACCTAAAATTCAGAGCCAAAGCCTTAATCGCCTAAT GTCTTTTTTTTTCCTTCTAAAGAAAACAAATTAGGATCTGTTGTTTAAGAGAAAAAAATGTTTTCTTTTTATGTAAATTT TAAAAACGAAGTTATATTTTTAAAACTATTGATAAAATAAAATAAAAAACAAGAAAGTTTATTGAAGTTAATTAAAACAA ATCCTAAACCTTGTATTATTCTTATTCAATAAAAATGTAAAAAAAAAAAGCATCAGATATATATGTAATTAACACCTCCA AATTTGAAGTGGAGAAAATGAGATTTGAAAGATGGTGAAAACCCCATCATCAATTAATATTCTTCTAGTGTCTGTAGACA TGTGAAGATTAGCTGATTAGGCATCAACAAGGGTAAAATAAATTTCCCATTATTATATTTTAACCTCTCAAAAGATCATT ATTATGTGGTCTAGCTTGATTGCTCTTATATAGTATCACTATTTAGTTTACTCCAACTAACTTTGTTTATTCACACTCAT TTAGGCTTCCATCTCATTTCCAATTTTTTTTTTATATTTCTTTTCCAGATCTCTCCTCTCTATTCTCATCTTTTAAACTG ATGGTGAAAATAATTTTTTTCTACTCCAAATGTCTTTGTCCTGGCTCTTATTTCGATTATTTTAATTCTACTAGTACCAT TCTTAGTTCACCTAAGGCCATTATGAGATTAAAGACTAGGTAAAGACCATGCTTAGTTCACCTAAGCCCATTATGAGATT AAAGACTAGGTAAAAAGGATAATGATTTATTCATAGTTTCACACCATCTTTCTCTTCTATATTATTTCAATTTATTATTT CTTTTTACTTTTTTTTTACAATTTTTATGACATCATTTATTATACTACTTATTTTCTCCTTTCTATTTGTATTCCATGGA GTGAGTGAACTTTGAGTGTACATGAACTATTACTACTATTCAGGTAAAAACGATGAATTGTCAGTAACATGCATAAAAGC GCCAAGCATGCATCAAGAGGAATCGAATCTTTGCTCTGCGAACTCTGCCTATCTCACTAAATGCATTGAATCTTGCCCCT CACAAGTCACAACCAATACACCACATGAAACAAAAGCTGAACCATATAATTAAATTCATGTTTGTAAATTAATGTAATAA AACTATCTTAAACCAAGTGGGTTGGTGTAGTGGTTCAGCACTTCATCCTTTAAGCTAGTGGTTGGGGGTTCGAATCTCAA CTCTTGCGAATAGAAAAAACTCCTTGACTAGCGGTGCGCTGACCGTGGGACGAGGGATTAGTCTCGCGGCTGTCGGATGT GGGAATACCTTGGTCAAGACCAAAAAAAGATTTAGAGTCTCAAATAAAAGAACATATTTTTAGTTCTCCGATAACATTAA TTTTTTAAATATTCTATTTTTGGTCATTTATTTTCTAAAATTATAACCTCACTTTAATCTTTTACACACTATGAAGAGTC TATTTTTCACCTAAACCTCTAAAACTGTTTAGTCCTAAATTAACCAAACCAGGAAGTGGAAGTGGTTGAGAGTTAAGGCG TCATATTTAATTATATCATCTAAAATGAATTGAAACACAAAGATGCCCCAGCTTTTTTTTATGCAAAAATTGTATTTGAC ATTGCAACCAATTTGCATAGGGCTAACCAAATCCTTGTTTGAATCTGAATACTTTATGCAAATAAAATCATGTGGTTTAG ATTGAATGTTATTTATATTTAAATTTTTGTTGAATTTAACGTCGGTCAACATTTGAGTGTGCTTGATAAAATCTTACTTT CACATTAATGTGTTAAAGAAGTGTATTTACCCATGAATTAGGAGTAAAAGAGTAATGATATATACACACCTCATTTTTTA AACACTTCATTTCCACCTCTTTTTATTTCTATCTCTCTCATCTTATCATCTATCACATCTCATATTTTCTCTTTCTTATT TTTTCTTTTCTTCCTATCTCTCTCATCATTCCACCTCTCCTTCACCTCAAAAGAGAGGTGTGGATGAAACATTATCCCAT GAATTAGTTTCCCTCTCAGAGAGATAGGGAGAGTGAGAGAAAACCTAAAAGTGGTATAGACTATAGAGAGTATTTCAACA GTAGTTCAACCATCCTTGAAGCTAACTGAACCAAAAATAATAGAACTAGTTGAGAGGTCACATTCTTAAAAGTAGAAAAA CAAGTAATGTTCACTGTAGTTCGTACATGGCAAGTGGCTAGAAAAACAAATAATGTTATCATATTTGCATGGAAGGAAGA AAAGTCCAAATTAATTATTGGTGTAGTTTGAAGGGAGTCCAGGATGAGACCTGGTGGGGTCCACTCAATTATTTTTATTC AGATATCTATTAGATGTATTATTGGTTAGTGTAATCTATTATTATAGAAATTAGTATCCATTTGTGTGTCTTTTGTGTAA AAGTTCACATGTAAACAAGATTACTATGAGCTGGATCCTCTGGGTGTAACATGCAGGGTTTCTGTTCACCGGGAACAGAA AAGCATGGCTTAAAATAATAAAGGAGGCTACGAGGAATGGTTAGGAAAAAGGTGATGTTACTTTATTTTAATCTTAAAAC AAGGTCTGAGAGTATGTAGATGTAGGATTAATCTATCATTCTATTATCAACACATTAATACACATTAAGCGGTAGGTGAT GTTATTTTAAAATAATATGAAAAAACCTTGAGGTTAGTTTAGGATATCTTCTAAAGTGTTACATATGTACAGTATCTAGA TTGCTCATAGGGAGGACTCTACACAAAGCAATATTAATTTGAATAGTATAACTTAAGGAGCAACCATGCATACTTCTAAA AATCAATCTCAAAATTTCCCCTTTGAGGGTTTTCATTATTTTAGGCAGTTTTTTTCCATCTTTTATGTCCTATTCCTCCT TTATTCAACTATCCCTTCAATTTCCCTTCTCTCACCATTTCCTTAAAATAATTATTTGTCACATCTTTTCCACCCTCTTT CCCTCATAACATCCTTTAGATTGGTTTTAGATGTAGATTTTGGTGCGACTAAGCCTATTGCTCTTAATTGTCCTCCTTCA CCAAGACCCCAAAATAGGGGCAATGAAGAAAAAATGAACAATTCGATAAAAGAAGAAAATTTGCTAGACACATGATTTTG AGGTCATATAGGTTTAAGGAGGATTTTTTTTTCTCTTGTTTGTTTTCGTAATGTTGGTTTCTGGTTTTGTGAGCAAGCAC ACTATGTATTGTTATATCTTATTATAGAACATCGTAGTAGTGCTCTGTTGTAGAGCTTGGTGTTCCTAATCTGTTTGATA TAAGTGTTGTTTGACCGCCCTCGTGGCAATAATGTGATTTTGGCTTGGAAAAAAAAACAAATTAATGAAGCTTCATTAGA TAAATTACTACATTTACCATTTTTTCTCTTTATTCTATTTTCTTTAACGAAATTGCATATTTTCTTTTGGTCATTAACAT GGTACTTCGATTTATTTTTTGACATTGTAGATGCTAAATATTGATTTTTTAAACTTCTCAGGCAGAGTGGCCCATAGATG TATCATACACCCGAGATGACTATTTCATGCGATGGAAGTACCCAAACTACAACTTCACCATGGCTAGTTTTTGGACACCC CATTTGGTAAGATCCAAAGAATCAGATTCAAACGGTCCAAGCCAAACAGGCCTTTACAACCTTTACCTTGATGAGCCAGA TGAGAAATGGATAACCCAAATAGAAGATTTTGACTATGTCATTCTCAATGGAGGACATTGGTTTACAAGGTCAATGGTAT TCTACGAGCAACAAAAAATCATAGGATGCCACTATTGCCTCTTAGAAAATGTCCCTGACTTAACCATGTACTATGGTTAT AGAAGGGCATTTAGAACAGCATTTAAAGCCATCAATAGTTTAAAGAATTTCAAGGGCATCACATTTCTCAGGACATTCTC ACCATCACATTTTGAGAATGGGATTTGGAATGAGGGAGGGAATTGTGTTAGGACTAAGCCATTTAGGAGCAATGAGACAC AATTAGAGGGTCTCAATTTGGAGTATTACATGATTCAATTGGAGGAGTTCAAAATTGCTGAGAAGGAAGCTAGAAAGAAG GGTTTGAGATATAGGTTGTTTGATACAATGCAAGCAACATTGTTGAGGCCAGATGGTCACCCTAGTAAATATGGGCATTG GCCTAATGAGAATGTGACATTGTACAATGATTGTGTTCACTGGTGCTTGCCCGGGCCTATCGACACGTGGAGCGATTTCC TGCTAGATTTGTTGAAAATGGAGGGTGTGAGATCAGCTGAAGAGAGGCTTCAGTTGGGCACAAATTGAACAAATGAAATA GATTTTTATTATATATACTTCTATCAATTCTATATGTAATCTAATTTTCTTGTAACTGTAAGCTGCCTGTGAGCACATGT TTTGTAAATCTTTTTTAAGATCTTAGTTGATTGATGTCTTTCAATAATAGAGAAAGATCTGTTTTTTTAGAATTCATGAC AAAGGTCTGTCAGCATACCACAAGCCTTAATCATTCCTGCCAATTGAACTGCTAATAACTGATGACAATCCATGAATTTT ATCAGGAGAAATGATAAGTAGTTATTTGTTGGTAATTCAGTAAATTATACTAATTAAGTCGGTTATGCTCAGTTACAACT TTGTAATTGTGTTAAAGACTTCAGTTTTCTGCTGACTTCAATTAGATGATATGTTCACTCTATTTTTCATTCTGTTACTC TTGATATGGCACCCGAACTAATATTTCACTTGTACGTTTTTAGCTAGGGAAAAATAACAATGTGATCAGCATTAACCATA CATTTTCAAGTAATATGTTGGGCTCTGGGGTTGGGTTCTGGGGTTTTGTCACAACC
CDS sequence (LotjaGi1g1v0524600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTCCAAGCCATGGAACTTCTCTTTGGCAAAAACACCCCAAAACAAATGATCCCAAAAGTAGCATTACTTGCAGT GTTTGCAATACTTGTCTTCACCGTCACCCCACTCTCCTACCCTCTGTTCAGATACTCTTCATCCCTAAAAAACAGAGCAC CCTCTGTTCCATTACCATCATTTGATGATTTGAATGAGTCAGCAAGTTTACCCTCAACCTCAGTGAAAAAATGTGACATT TTCACTGGTGAGTGGGTTCCAAACCCAAAGGCTCCTTATTACACAAACAAGACATGCTGGGCAATTCATGAGCACCAGAA TTGCATGAAGTATGGGAGGCCAGACTCTGAGTTCATGAAATGGAGGTGGAAGCCAAATGGGTGTGAGCTTCCCATTTTCA ACCCTTTTCAGTTTTTGGAGATTGTGAGGGGGAAATCTTTGGCTTTTGTTGGAGATTCAGTTGGGAGGAATCAGATGCAG TCCATGATTTGCCTCCTATCAAGGGCAGAGTGGCCCATAGATGTATCATACACCCGAGATGACTATTTCATGCGATGGAA GTACCCAAACTACAACTTCACCATGGCTAGTTTTTGGACACCCCATTTGGTAAGATCCAAAGAATCAGATTCAAACGGTC CAAGCCAAACAGGCCTTTACAACCTTTACCTTGATGAGCCAGATGAGAAATGGATAACCCAAATAGAAGATTTTGACTAT GTCATTCTCAATGGAGGACATTGGTTTACAAGGTCAATGGTATTCTACGAGCAACAAAAAATCATAGGATGCCACTATTG CCTCTTAGAAAATGTCCCTGACTTAACCATGTACTATGGTTATAGAAGGGCATTTAGAACAGCATTTAAAGCCATCAATA GTTTAAAGAATTTCAAGGGCATCACATTTCTCAGGACATTCTCACCATCACATTTTGAGAATGGGATTTGGAATGAGGGA GGGAATTGTGTTAGGACTAAGCCATTTAGGAGCAATGAGACACAATTAGAGGGTCTCAATTTGGAGTATTACATGATTCA ATTGGAGGAGTTCAAAATTGCTGAGAAGGAAGCTAGAAAGAAGGGTTTGAGATATAGGTTGTTTGATACAATGCAAGCAA CATTGTTGAGGCCAGATGGTCACCCTAGTAAATATGGGCATTGGCCTAATGAGAATGTGACATTGTACAATGATTGTGTT CACTGGTGCTTGCCCGGGCCTATCGACACGTGGAGCGATTTCCTGCTAGATTTGTTGAAAATGGAGGGTGTGAGATCAGC TGAAGAGAGGCTTCAGTTGGGCACAAATTGA
Protein sequence (LotjaGi1g1v0524600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFQAMELLFGKNTPKQMIPKVALLAVFAILVFTVTPLSYPLFRYSSSLKNRAPSVPLPSFDDLNESASLPSTSVKKCDI FTGEWVPNPKAPYYTNKTCWAIHEHQNCMKYGRPDSEFMKWRWKPNGCELPIFNPFQFLEIVRGKSLAFVGDSVGRNQMQ SMICLLSRAEWPIDVSYTRDDYFMRWKYPNYNFTMASFWTPHLVRSKESDSNGPSQTGLYNLYLDEPDEKWITQIEDFDY VILNGGHWFTRSMVFYEQQKIIGCHYCLLENVPDLTMYYGYRRAFRTAFKAINSLKNFKGITFLRTFSPSHFENGIWNEG GNCVRTKPFRSNETQLEGLNLEYYMIQLEEFKIAEKEARKKGLRYRLFDTMQATLLRPDGHPSKYGHWPNENVTLYNDCV HWCLPGPIDTWSDFLLDLLKMEGVRSAEERLQLGTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 37 | 37 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 15 | 422 | 408 | 1.1E-196 | – | |
| PANTHER | 15 | 422 | 408 | 1.1E-196 | ||
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 22 | 33 | 12 | - | – | |
| Phobius | 34 | 37 | 4 | - | – | |
| Phobius | 38 | 436 | 399 | - | – | |
| Pfam | 76 | 129 | 54 | 3.7E-22 | ||
| Pfam | 130 | 417 | 288 | 1.2E-93 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0524600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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