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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0524700 |
| Transcript ID | LotjaGi1g1v0524700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT5G15900.1 TRICHOME BIREFRINGENCE-LIKE 19; Swiss-Prot: sp|Q9LFT0|TBL19_ARATH Protein trichome birefringence-like 19; TrEMBL-Plants: tr|A0A151QU45|A0A151QU45_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0524700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105014743..105018089) extracted from Lotus japonicus Gifu genome v1.2.
CATGAATTCAAATTATGCTAACCACACATCAAGTATTTGCATGTATATATAAGCCATTCCTTTTCATAAAACTAAATATA AGCCATATCAGCCAACCTTTTGATACAGACTTCAAACTCAACCATGAGATTTCAATCCATACAACTTATCAATGGGAAGC ACCCATCAGGAAACACTAAAATAAGTGTTACCCTGCTTTCATTTGCTTTGATTCTTATCATGTCTCCATTTTTTCTCATG AAATACCCACATCAATCATCATCTCCTAAGATTTATCCTAGCAATTTGAATTTGAACCTGAACCACCCAGATATAAAAGG ATATTGCAACATCTTCTCTGGAGAATGGGTTCCTTATAGTAAAGGACCTTATTATTATAATGAGACTTGCCATTATCTAA TAGACCAGCAGAATTGCATAAAGTTTGGGAGACCTGACAGAGACTTCCTCAAATGGAGGTGGCAACCTTATGAATGTGAG CTCCCACCATTTGATGCAACTCATTTCTTGAAGCTTGTAAGAGGAAAGTCTATGGCCTTTCTTGGAGACTCGGTGGGAAG AAACCAGATGAATTCATTGTTGTGCCTCCTAAATCAAGTAAGTAAAATAGATCAATCACACATTTTTTCTTTTTGAAAGC TTAATTTTCTCTCACAACTCTATCCCTCCATTACCAATCAAGGCACCATATATAAAAGTTTTAAATTGCAATTCACAAAA TCAAAACTGAAGATTATCACAATTATATATAGTAGTAATTGTGATGAGTTTAATGATTATGTATTACATATGAACAAGTT TTTCAATTAGAATTCATCAATTTATTATGTCATAATTAAATTTGAATTTAAAATAAGGTCCTTGATGTGGTACCTTGAGT CAATTCAAGGTGTGGTACCAAAAATGAGTTAAATTAGTTGTAAAACTTATATATCCGTTAAAAAGTTCGATTTTATTATA TCATAGTAATGTAGTATTCAATTGCCAGAGATCTGAAATTTGTTTGTTGTGTTTTTTAACCTTTGTTCTTCCGTCAAATA TGGTCATTTGACGCACATCGCCACCATCATCGTTCGTCTTCACTACTCATCCATTTTTCATTAAAAAATGAATTATATGG AATAGAGTTAATTGAAAAATAAAATAGAATTTGAAAATGTAAAATTTACGTTGAACAACATAGTAATAATCTATTAAATA ACTTAATGTGGATATCATACCCAAAAAAATATTATGGGTACCACAAAATTTGCCTTAAAAATAATTAAATAAAAATTGAA AAATATAATTGAATGCATGTGTAAAACTCTTTACACGCAAATAAATTAAATCTAATTGTGATAAAAACCACAATTGAAAC TTTCACTTAAAGTTTGACCGTGTAAAGATTTTTTTATATTGACATTCAATTAGGTTTTACCAATATTGACACATCATATA GTTTAGTTAAAAAAAGAAAAAAATACTAAAAGTGAAAATAGTGATATGTGATTAAACATATGCATAACATCTTTTCAAAA AAAAAAAAACATATGCATAACATTGTACATTAATTAAATTCTTACTCTTAGTGTAGTTATGAAATTTGATCTTGACAAAC CGGTTCAACCGGTTGAATCAGGAATCATTCAAGTAATTAGTAAAAATTCAATTATTTTCATAATTATGGAACTTTCAAAA AAATAATAATTATGAATTGGTCAAGAATCAGTCGAATTGTGTCAAAGCTGAAGCTATTAAACTAGTTTGATCCGGCATTT TAATTTAACGTTCAGTGATTGAGGTCCCCAAATTTTGACTTAATCTTTTATGACAATGTCTTATTTAATATAATTTTTTT TTTAGTTTCACCGGTTGAATCACAATTGAAACAAAAAATTATATATTACTCTTTTCATCAATTCAATGATCCGTTCAGTT TTAAAACTCAGTTATTAACTCTTCAACTCATTGGGACATGACATTTTGTTAATTTATGAGTTGCACACTTACTATCCTTT AAGGTTGCTGGTCCTGAGGACATTTCAAAGAGATACACAACAGATGCCATTTATTTCCGAAGGTGGTTCTATCCTGATTA CAATTTCACCCTCGCAACACTCTGGTCCCCATTCTTAGTGAAAGCCACTGATGCTGACCTTAATGGTCATTCCAACACCA GCCTCATGCACTTGCATCTTGATAAGGCAGATGAAGCATGGGTCAGTGAGATTGAGAATTTTGATTTTGTCATCATCTCA GCTGGCCAATGGTTCTTCAGGCCACTTGTGTTCATTGAAAATAATGGCCAAATTGTTGGGTGCCACAAATGTGGACAAAA TGACATAAAACCTCTCACTCACTACTATGGATACAGCAAAGCATTCAGAACTACATTCAGAACAATTGTGAATCTCAAAA GGTATAAAGGGGTGACAATTTTAAGAACATTCTCTCCAGCACACTTTGAAAATGGTGATTGGAACAAAGGTGGGAGTTGT GAGAGGACAAAGCCTTATACAAAAGAAGAAGTGAATTTTGATGGGTATATTTTTGAGACATATAGGACTCAAGTGGAGGA ATTTAGAAAAGCAGAGAAGAGAGCAAGGAAGAAGGGTTTGAAGTTTCTGATGATGAATGTAACTGAGATTATGCTTAGGA GGCCTGATGGACATCCTAATAACTTTGTGTATGGACATTCTAAGGACAAAAATGTGACATTTAATGATTGTGTTCATTGG TGCTTGCCTGGCCCTATTGACACATGGAATGAGTTTTTGCTCTACATGTTGAAAATGGAAAGTCAGAAACCTTTGGTTTC AACTTTACAGAGATTTGTCTAGAACCAAAAAAAAATCAGATTAGCCATGTTGACATTTGAACAAAATAGTGATAATGTTG GCACGAGATTGTTCAAGTTTAAGCAGATGTTTGAGTTTAAGTCACTGGAATGCACTTACGGTAAATACTTGAGTTTTAAT ATGTAGAGTTTACCGCTAACTTAAATAAGATTGTCTTTTTCTAGGATTTTTTTCCCACAACTGTAATTCTTTCCGGTATA AACAAAAAAGGAGACAGGGAGGGGCAAGCCAAATGTAGTTTGGCAACTATTGATTCATTGAAACTAGAATGGAAGTTTGA TTTGTGGATACATATGCATTTGTTATGTCTTGATTTTTAAATATAATTGGTCTATTTTTCAGGCCCAAATTTCCCCGACT TATCTTGGGCTGGATCCGTTTGAGACCCTGCAGGTCTGTTTGGAATGGCATACTTGGCAAGTTGGCTTGCAAAGCAAAAA AGAGTTGCCTTCGTTTTTTATCCTTTTTTAATAGTGTTGACAAAAAATCATTTTCGATATATGTGGA
CDS sequence (LotjaGi1g1v0524700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATTTCAATCCATACAACTTATCAATGGGAAGCACCCATCAGGAAACACTAAAATAAGTGTTACCCTGCTTTCATT TGCTTTGATTCTTATCATGTCTCCATTTTTTCTCATGAAATACCCACATCAATCATCATCTCCTAAGATTTATCCTAGCA ATTTGAATTTGAACCTGAACCACCCAGATATAAAAGGATATTGCAACATCTTCTCTGGAGAATGGGTTCCTTATAGTAAA GGACCTTATTATTATAATGAGACTTGCCATTATCTAATAGACCAGCAGAATTGCATAAAGTTTGGGAGACCTGACAGAGA CTTCCTCAAATGGAGGTGGCAACCTTATGAATGTGAGCTCCCACCATTTGATGCAACTCATTTCTTGAAGCTTGTAAGAG GAAAGTCTATGGCCTTTCTTGGAGACTCGGTGGGAAGAAACCAGATGAATTCATTGTTGTGCCTCCTAAATCAAGTTGCT GGTCCTGAGGACATTTCAAAGAGATACACAACAGATGCCATTTATTTCCGAAGGTGGTTCTATCCTGATTACAATTTCAC CCTCGCAACACTCTGGTCCCCATTCTTAGTGAAAGCCACTGATGCTGACCTTAATGGTCATTCCAACACCAGCCTCATGC ACTTGCATCTTGATAAGGCAGATGAAGCATGGGTCAGTGAGATTGAGAATTTTGATTTTGTCATCATCTCAGCTGGCCAA TGGTTCTTCAGGCCACTTGTGTTCATTGAAAATAATGGCCAAATTGTTGGGTGCCACAAATGTGGACAAAATGACATAAA ACCTCTCACTCACTACTATGGATACAGCAAAGCATTCAGAACTACATTCAGAACAATTGTGAATCTCAAAAGGTATAAAG GGGTGACAATTTTAAGAACATTCTCTCCAGCACACTTTGAAAATGGTGATTGGAACAAAGGTGGGAGTTGTGAGAGGACA AAGCCTTATACAAAAGAAGAAGTGAATTTTGATGGGTATATTTTTGAGACATATAGGACTCAAGTGGAGGAATTTAGAAA AGCAGAGAAGAGAGCAAGGAAGAAGGGTTTGAAGTTTCTGATGATGAATGTAACTGAGATTATGCTTAGGAGGCCTGATG GACATCCTAATAACTTTGTGTATGGACATTCTAAGGACAAAAATGTGACATTTAATGATTGTGTTCATTGGTGCTTGCCT GGCCCTATTGACACATGGAATGAGTTTTTGCTCTACATGTTGAAAATGGAAAGTCAGAAACCTTTGGTTTCAACTTTACA GAGATTTGTCTAG
Protein sequence (LotjaGi1g1v0524700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFQSIQLINGKHPSGNTKISVTLLSFALILIMSPFFLMKYPHQSSSPKIYPSNLNLNLNHPDIKGYCNIFSGEWVPYSK GPYYYNETCHYLIDQQNCIKFGRPDRDFLKWRWQPYECELPPFDATHFLKLVRGKSMAFLGDSVGRNQMNSLLCLLNQVA GPEDISKRYTTDAIYFRRWFYPDYNFTLATLWSPFLVKATDADLNGHSNTSLMHLHLDKADEAWVSEIENFDFVIISAGQ WFFRPLVFIENNGQIVGCHKCGQNDIKPLTHYYGYSKAFRTTFRTIVNLKRYKGVTILRTFSPAHFENGDWNKGGSCERT KPYTKEEVNFDGYIFETYRTQVEEFRKAEKRARKKGLKFLMMNVTEIMLRRPDGHPNNFVYGHSKDKNVTFNDCVHWCLP GPIDTWNEFLLYMLKMESQKPLVSTLQRFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 10 | 420 | 411 | 1.5E-189 | – | |
| PANTHER | 10 | 420 | 411 | 1.5E-189 | ||
| Phobius | 20 | 39 | 20 | - | – | |
| TMHMM | 20 | 39 | 20 | - | – | |
| Phobius | 40 | 430 | 391 | - | – | |
| Pfam | 68 | 119 | 52 | 1.6E-19 | ||
| Pfam | 120 | 412 | 293 | 8.0E-91 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0524700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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