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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0526200 |
| Transcript ID | LotjaGi1g1v0526200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0526200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105309287..105312026) extracted from Lotus japonicus Gifu genome v1.2.
CCCATATACATAGGCCAAATATCCACCAACATATCTGCTCATCTGCTGGTGCTGAAAGAAAGATGAACGAGCAGCGACGA AGCTGCACGGAGGAGAATCCATCACTCTCTTCCATTCTCCCCGACGAGTTGATCATACAAATCCTCTTGCAACTACCAGT GACTTCTCTTCTCCGTTTCAAATCCGTCTCCAAATCATGGTTCTCTCAAATTTCCAATCCCCAATTTGCCAAATCCCATT TTAACCTAGCTGCTTCACCCACCCACTATCTCTTCCTCAAATCCACCGATGAATTCCAATTCCAAACCCTAGACATTGAA TCATCACCACCATTCACCACTGCAGTGCTCAACTACCCGCATGAACAACCCCGTTCTGGTAGTAATTCTATATTCTGTCC CTCCATCACTGATCTTGAGGTTCTGGGTTCTTGCAGAGGGTTTCTACTTTTCCTTTTACCCAATTTCGCTGATTTCGTTG TGTTTAATCCATCAACGGGTTTCCAAAGACGGGTTCAATCGACTAGTTTTCGTTATTCTGCATCTTCTTTGTATGGTATT GGGTATGATGAATCAAATGATGATTACTTGTTAGTTTCTGTAAATTCCTATGGCTATGCTCCTACAATTGAGGGTTTTTC TTTGAAAACCAATGTACCCTTTTCGCTGCGAATGGATGATGAATATCGGCATCTTGATTTCGATTATGAACATGATTTGT TCTTAAATGGGTGTCTTCATTGGTTGGTTAAGCCTAGTGTTAAGCAGGTTTATGTAGTGCTGGCATTTGATTTGATACGG AGGAGTTTATCGGAGATTGCTCTGTCGCATGATTTAGCTCTGGAATTGAATAAGAAATCGTATTGTTTGGGAGGGATGAG AGGATTTCTTGGTGTGTGTTGCATTGGTTATCACGGCGTGGCTGAAATATGGATAATGAAAGAGTATAAAGTGCGATCGT CTTGGACTAAGATTGTTTTGTTTGCTCATGACATCCCTCGCACGTCCGGATTTTTTCCTATATGTTTCACCAAACGGGGC GATGTTTTTGGAACGAATGAGCTTGGGAGGTTATTGAGACTCGACGGTAAAGGAAAGCTGCTTGCAGTTTGGCCGGGGGA GAGCAGATATTGTCTATTACATAGTCGTATGTATACAGCGAGTTTACTGTCACTCCCTGGTTAGTTTGAGGACCAACAGA GTATCAATGTATGTAATTCTCCAATCATTTTCACCATTTCAGTACTATTACTATTTACCGAATGCATGCTTACATGAAAA TGATTCTTTAACCTATCTTATACTCTCTCCTTCCTAGCTAGTTATGTTTCTCTCTTTATAAGTAAATGGTACATGAAATT CCAAAGAAAGATGATATTTTATGGTTTACTGAATTCACTGTTGGATAGGGAAAATATTTTGTCTCGCTTGCTCGGAATAA TGAAAGGCAGTTTGGGTGGAAAATTATGTAAGAGAAATAACTATGATCTAGAGTGAAATAACAGTCCTCAAACTAAAATC TGATACAGTATATAATATGGTGATATTTACAAAAAGCTCATTTTTCTTGCAGGCTTGAAGCATGCAAGAATACTCTGAAT AGTCAGGTCAATGTCATAGCTTTCCTTCAAATGATGATACTACAAGAAGAAAACATAGTATTTCAAAGAGAATATAAATT ATATCATGTAAAATAGTCTTGCATGGCCGGTGTCTGTTTTAGTGGTGATTTTAGTAAGGTAGGAGTGTAGATAGACTTTA GAATTGAATTATGTTCCTGAGTATGAAAGTTAGAAAATCCTAGTTGGAATTAGTACTTGATATTTTGTTTCTTTATCTAT TTCCCCTCCTAATTTTTTTCTTGTCTTAGCAGTTTTTCCTCTTACTGTATTTTAATGTACTGGTTTTTTATCTTATGTTC TGGCACATTTATCAGTTCACTGTTAGATTTATTGTTTTTATGTGTAATCAGAAAATGCCTGAATTGAGTGTGCAGATGAA ACATGTTTATAGGCATGCATAATTTATCATATGGTATTAATTTCCCGTTCTCTAAGTTAGGTATCTCATCATGTGTTATT TGTAGTAAAAAACCAGGTACATGCTGAAAATAAACTATCTGTTGAAAAGTCTCACACTGAAAATAAACTCACCAATGTTA TGTTCATCAAATGAATATTTCGGTCACACTTTCTTTACTTGTTCAGAGATACAAATGGATTGAAATTTTAAAGTCTTTCT GGTGGGCATCTTCCTGTGTTTTGATTTCAGCCCTCAACTTTAAAATTATGTTCAAAGATCATGCCATTGAACCTTTTGAT ATCATACTGTGGCTTGTATACTTCCTTTTTCTATTGTGTGCCTGCAATATGTTTGGTTGTTTTGTCATTCAAACTGACCC AAAATATTTGTTTGAGACACTTTTAACTCAGAAATTTGAAACTTAACAAACAGGACTAGCCCATGCTACCTTCTCAGCAA GTTGATTTTCTCATGGGTTAATAATTCTTCACTCAGTCTGGGTTACCAAAACTTTGTGCATGCATGGGAATCCCTTGTAA TGGAGAGAAGCAAGAACAATACCAAAAACTTGGCTCTTTAGTCTATAGTCTGAAATTACTTGAAAGAAAACATATTAATA GCATTTTATGCATTACTCAGTATCATTTCTGTTGTAGTTTCACCTCTAATACTCTTAATTTGTAAACCACTCAAATAACA CATTGAGTCTGATGTCAAAG
CDS sequence (LotjaGi1g1v0526200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGAGCAGCGACGAAGCTGCACGGAGGAGAATCCATCACTCTCTTCCATTCTCCCCGACGAGTTGATCATACAAAT CCTCTTGCAACTACCAGTGACTTCTCTTCTCCGTTTCAAATCCGTCTCCAAATCATGGTTCTCTCAAATTTCCAATCCCC AATTTGCCAAATCCCATTTTAACCTAGCTGCTTCACCCACCCACTATCTCTTCCTCAAATCCACCGATGAATTCCAATTC CAAACCCTAGACATTGAATCATCACCACCATTCACCACTGCAGTGCTCAACTACCCGCATGAACAACCCCGTTCTGGTAG TAATTCTATATTCTGTCCCTCCATCACTGATCTTGAGGTTCTGGGTTCTTGCAGAGGGTTTCTACTTTTCCTTTTACCCA ATTTCGCTGATTTCGTTGTGTTTAATCCATCAACGGGTTTCCAAAGACGGGTTCAATCGACTAGTTTTCGTTATTCTGCA TCTTCTTTGTATGGTATTGGGTATGATGAATCAAATGATGATTACTTGTTAGTTTCTGTAAATTCCTATGGCTATGCTCC TACAATTGAGGGTTTTTCTTTGAAAACCAATGTACCCTTTTCGCTGCGAATGGATGATGAATATCGGCATCTTGATTTCG ATTATGAACATGATTTGTTCTTAAATGGGTGTCTTCATTGGTTGGTTAAGCCTAGTGTTAAGCAGGTTTATGTAGTGCTG GCATTTGATTTGATACGGAGGAGTTTATCGGAGATTGCTCTGTCGCATGATTTAGCTCTGGAATTGAATAAGAAATCGTA TTGTTTGGGAGGGATGAGAGGATTTCTTGGTGTGTGTTGCATTGGTTATCACGGCGTGGCTGAAATATGGATAATGAAAG AGTATAAAGTGCGATCGTCTTGGACTAAGATTGTTTTGTTTGCTCATGACATCCCTCGCACGTCCGGATTTTTTCCTATA TGTTTCACCAAACGGGGCGATGTTTTTGGAACGAATGAGCTTGGGAGGTTATTGAGACTCGACGGTAAAGGAAAGCTGCT TGCAGTTTGGCCGGGGGAGAGCAGATATTGTCTATTACATAGTCGTATGTATACAGCGAGTTTACTGTCACTCCCTGGTT AG
Protein sequence (LotjaGi1g1v0526200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNEQRRSCTEENPSLSSILPDELIIQILLQLPVTSLLRFKSVSKSWFSQISNPQFAKSHFNLAASPTHYLFLKSTDEFQF QTLDIESSPPFTTAVLNYPHEQPRSGSNSIFCPSITDLEVLGSCRGFLLFLLPNFADFVVFNPSTGFQRRVQSTSFRYSA SSLYGIGYDESNDDYLLVSVNSYGYAPTIEGFSLKTNVPFSLRMDDEYRHLDFDYEHDLFLNGCLHWLVKPSVKQVYVVL AFDLIRRSLSEIALSHDLALELNKKSYCLGGMRGFLGVCCIGYHGVAEIWIMKEYKVRSSWTKIVLFAHDIPRTSGFFPI CFTKRGDVFGTNELGRLLRLDGKGKLLAVWPGESRYCLLHSRMYTASLLSLPG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 98 | 94 | 1.4E-7 | – | |
| ProSiteProfiles | 13 | 59 | 47 | 9.074 | ||
| SUPERFAMILY | 13 | 73 | 61 | 4.06E-13 | ||
| PANTHER | 16 | 367 | 352 | 2.4E-70 | – | |
| PANTHER | 16 | 367 | 352 | 2.4E-70 | – | |
| Pfam | 17 | 54 | 38 | 5.6E-7 | ||
| SMART | 19 | 59 | 41 | 1.2E-5 | ||
| TIGRFAM | 123 | 328 | 206 | 1.3E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0526200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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