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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0527900 |
| Transcript ID | LotjaGi1g1v0527900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock 70 kDa protein; TAIR: AT3G12580.1 heat shock protein 70; Swiss-Prot: sp|P09189|HSP7C_PETHY Heat shock cognate 70 kDa protein; TrEMBL-Plants: tr|K7L2A2|K7L2A2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0527900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105473502..105475777) extracted from Lotus japonicus Gifu genome v1.2.
CCGCAATAGGCGCAACACATACCGCAGCAACGATAATATCCGTTATCGCGAAATCCGCAACGCGACCGCGACCGCGACCG ATATTTCTATTCTTCCCAAGCCACATTCCAGTTCTTTAGACCACTTTGTTTTGTTAGATTGAAAGAATGGGCAAAACTGA TGAGGGATGTGCTATAGGAATCGACCTTGGCACCACTTATTCTTGTGTTGCAGTTTGGCAGGAGGAACATAGCAGAGTAG AGATCATTCACAATGACCAAGGAAACAGAACTACTCCCTCCTTTGTTGCTTTCACAGATGAACAAAGATTGACTGGTGAA GCTGCAAAGAATCAGGCTGCTACAAACCCTGAGAACACTGTCTTTGGTAAAATTTTATACTTTTATTACCTCCCTACTCT AAATGATATATATTGAGAATTATTACTATATTTGCAGATGCTAAGAGGTTAATTGGTAGGAAGTATAGTGATCCCATTAT TAAGAATGATATCATGTTATGGCCATTCAAGGTTGTTGCGGGTGTTAATGACAAACCCATGATTGTTGTTAAGTACAAGG GTCAGGAAAAACATCTTTGTGCCGAAAGTTTCATCCATGGTCCTGACAAAGATGCGGGAGATAGCAGAGGCATATCTGGG GTCACCTGTTAAGAGTGCAGTCATAACTGTGCCTGCTTATTTCAATGACTCTCAGCGCAAAGCCACTATAGATGCTGGGG CCATTGCTGGTCTTGATGTTAAGCGGATAATCAGTGAACCCACAGCTGCAGCTATTGCCTATGGCCTTGACAAGAAAACT AATTGTCAAGAAGAGCAAAATATATTCATCTTTGACCTTGGTGGTGGTACTTTTGATGTGTCTCTTCTTACAATTAATGG TAAGGTATTTGAAGTGAAGGCCACTGCTGGAAATACTCACCTAGGAGGAGAGGACATTGATAACAGAATGGTGAACTACT TTGTAGAGGAGTTTAAAAGGAAGAGCAATTTGGATATTAGTGGAAATGCAAAATCACTAAGGAGGCTGAGAAGTGCTTGT GAGAGGGCTAAAAGGGTACTGTCATCAATGGTTGTTACCACCATTGAGGTAGATTCTTTGTTTCAAGGCATTGATTTCTG TTCAACAATCACTCGTGCAAAATTTGAGGAAATCAACATTGAAATTTTTGAAGAGTGCATGAAGAATGTGGATAGTTGTC TTGTTGATGCTAAGATGGACAAGAGCTGTGTAGCCTGTGTGCATGATGTTGTTCTTGTTGGTGGATCTTCTAGGATTCCA AAAGTGCAGCAGCTATTGCAAGAGTTTTTCAATGGAAAGGATTTGTGCAGGAGCATCAACCGTGATGAAGCAGTTGCTTA TGGTGCAGCTGTCCAGGCTGCATTGTTGAGTGAAGGCATTAAGAATGTTCCAAACTTGGTGCTGTTAGATGTTACACCAC TATCTCTCGGTAAGCATGTACAAGGTGATATCATGAGTGTGGTGATTCCTAGGAATACTACTATTCCGGTAAAGAAGACA AAAGATTTTGTTACAATTCATGATAATCAAACCGAAGTCTTGATTCAGGTTTACGAGGGTGAGAGAGCTAGAGCTAGTGA TAACAATGTTGGGTTCTTTTTGTCTATCTTGCTTTCCTCCTGCTCCTCGTGGCCACCCATTGATGTATCGTTTGCCGTAT ATGAAAATGGTATTCTAACTGTTTCAGCTAAGGAAAGAACCACTGGCAAGATGAATGAGATCACCATAACCAATGACAAA GAAAGACTGTCAACAGAAGAAGTGAAGAGACTTATTCAAGAAGCTGAGAGTTTTGAGGCGGAGGATAAGAAATTCCTTAT GAAGGCAAATGCAATGAATGCTTTGGATGACTACATTTATAAGATGAGGAAAGCTTTGAAGAATGATAGTATTAATCCAA AGCTTTGCTCAGAAGATAAGGAGAAAATCAATTCTGCAATTACAAAGGCCACCGATATGCTTGATGGTGGTAACAATCAG CCAGATGAAATACAGGTGCTTGAGGATTATGTAAAGGAGCTTGAGAGCATCTTTCAAGACATCATAAGGAAGACTGGCTA GTTATTTTCATTCTAGAGTTTATTTTGTACTGACTTGTCATTTTGTTTGTGATGAAGAGAACCTGTATGATCAATCATGT TTAAATTGTTACTGTGTGGTTGACTTGGTGCATGTTTGGGAACGCGTTGTATAATCTGGTTAAAAGTGAAAATCAATTTT GAGAAACAACGTGTGACTCAACATGCTGCCTAAATT
CDS sequence (LotjaGi1g1v0527900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCCTGACAAAGATGCGGGAGATAGCAGAGGCATATCTGGGGTCACCTGTTAAGAGTGCAGTCATAACTGTGCCTGC TTATTTCAATGACTCTCAGCGCAAAGCCACTATAGATGCTGGGGCCATTGCTGGTCTTGATGTTAAGCGGATAATCAGTG AACCCACAGCTGCAGCTATTGCCTATGGCCTTGACAAGAAAACTAATTGTCAAGAAGAGCAAAATATATTCATCTTTGAC CTTGGTGGTGGTACTTTTGATGTGTCTCTTCTTACAATTAATGGTAAGGTATTTGAAGTGAAGGCCACTGCTGGAAATAC TCACCTAGGAGGAGAGGACATTGATAACAGAATGGTGAACTACTTTGTAGAGGAGTTTAAAAGGAAGAGCAATTTGGATA TTAGTGGAAATGCAAAATCACTAAGGAGGCTGAGAAGTGCTTGTGAGAGGGCTAAAAGGGTACTGTCATCAATGGTTGTT ACCACCATTGAGGTAGATTCTTTGTTTCAAGGCATTGATTTCTGTTCAACAATCACTCGTGCAAAATTTGAGGAAATCAA CATTGAAATTTTTGAAGAGTGCATGAAGAATGTGGATAGTTGTCTTGTTGATGCTAAGATGGACAAGAGCTGTGTAGCCT GTGTGCATGATGTTGTTCTTGTTGGTGGATCTTCTAGGATTCCAAAAGTGCAGCAGCTATTGCAAGAGTTTTTCAATGGA AAGGATTTGTGCAGGAGCATCAACCGTGATGAAGCAGTTGCTTATGGTGCAGCTGTCCAGGCTGCATTGTTGAGTGAAGG CATTAAGAATGTTCCAAACTTGGTGCTGTTAGATGTTACACCACTATCTCTCGGTAAGCATGTACAAGGTGATATCATGA GTGTGGTGATTCCTAGGAATACTACTATTCCGGTAAAGAAGACAAAAGATTTTGTTACAATTCATGATAATCAAACCGAA GTCTTGATTCAGGTTTACGAGGGTGAGAGAGCTAGAGCTAGTGATAACAATGTTGGGTTCTTTTTGTCTATCTTGCTTTC CTCCTGCTCCTCGTGGCCACCCATTGATGTATCGTTTGCCGTATATGAAAATGGTATTCTAACTGTTTCAGCTAAGGAAA GAACCACTGGCAAGATGAATGAGATCACCATAACCAATGACAAAGAAAGACTGTCAACAGAAGAAGTGAAGAGACTTATT CAAGAAGCTGAGAGTTTTGAGGCGGAGGATAAGAAATTCCTTATGAAGGCAAATGCAATGAATGCTTTGGATGACTACAT TTATAAGATGAGGAAAGCTTTGAAGAATGATAGTATTAATCCAAAGCTTTGCTCAGAAGATAAGGAGAAAATCAATTCTG CAATTACAAAGGCCACCGATATGCTTGATGGTGGTAACAATCAGCCAGATGAAATACAGGTGCTTGAGGATTATGTAAAG GAGCTTGAGAGCATCTTTCAAGACATCATAAGGAAGACTGGCTAG
Protein sequence (LotjaGi1g1v0527900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLTKMREIAEAYLGSPVKSAVITVPAYFNDSQRKATIDAGAIAGLDVKRIISEPTAAAIAYGLDKKTNCQEEQNIFIFD LGGGTFDVSLLTINGKVFEVKATAGNTHLGGEDIDNRMVNYFVEEFKRKSNLDISGNAKSLRRLRSACERAKRVLSSMVV TTIEVDSLFQGIDFCSTITRAKFEEINIEIFEECMKNVDSCLVDAKMDKSCVACVHDVVLVGGSSRIPKVQQLLQEFFNG KDLCRSINRDEAVAYGAAVQAALLSEGIKNVPNLVLLDVTPLSLGKHVQGDIMSVVIPRNTTIPVKKTKDFVTIHDNQTE VLIQVYEGERARASDNNVGFFLSILLSSCSSWPPIDVSFAVYENGILTVSAKERTTGKMNEITITNDKERLSTEEVKRLI QEAESFEAEDKKFLMKANAMNALDDYIYKMRKALKNDSINPKLCSEDKEKINSAITKATDMLDGGNNQPDEIQVLEDYVK ELESIFQDIIRKTG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 492 | 492 | 2.4E-211 | – | |
| PANTHER | 1 | 492 | 492 | 2.4E-211 | ||
| Pfam | 1 | 491 | 491 | 7.2E-160 | ||
| SUPERFAMILY | 1 | 66 | 66 | 2.17E-23 | ||
| Gene3D | 1 | 262 | 262 | 4.4E-109 | – | |
| PRINTS | 21 | 41 | 21 | 3.2E-47 | – | |
| Gene3D | 67 | 249 | 183 | 4.4E-109 | – | |
| SUPERFAMILY | 71 | 265 | 195 | 1.05E-59 | ||
| ProSitePatterns | 78 | 91 | 14 | - | ||
| PRINTS | 84 | 94 | 11 | 3.2E-47 | – | |
| Gene3D | 110 | 187 | 78 | 4.4E-109 | – | |
| PRINTS | 215 | 231 | 17 | 3.2E-47 | – | |
| ProSitePatterns | 218 | 232 | 15 | - | ||
| PRINTS | 247 | 267 | 21 | 3.2E-47 | – | |
| Gene3D | 265 | 390 | 126 | 7.1E-40 | ||
| SUPERFAMILY | 270 | 424 | 155 | 1.83E-41 | ||
| PRINTS | 273 | 292 | 20 | 3.2E-47 | – | |
| PRINTS | 352 | 368 | 17 | 3.2E-47 | – | |
| Gene3D | 391 | 494 | 104 | 9.1E-24 | ||
| SUPERFAMILY | 419 | 492 | 74 | 3.14E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0527900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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