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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0533400 |
| Transcript ID | LotjaGi1g1v0533400.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal tolerance protein; TAIR: AT2G39450.1 Cation efflux family protein; Swiss-Prot: sp|Q5NA18|MTP5_ORYSJ Metal tolerance protein 5; TrEMBL-Plants: tr|G7KVN9|G7KVN9_MEDTR Cation diffusion facilitator family transporter; Found in the gene: LotjaGi1g1v0533400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106176616..106179055) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCCTTTAGTTTTATTTTTCTGCTCTTTATTTCTTCAGGTGAAGAAGATAATATTGCTGAATACTATCAGCAGCAGGT TGAAGTGCTTGAGGGCTTTAATGAAATGGATGCCTTAGCCGAGCGTGGATTTATTCCTGGAATGTCAAAGGTTTCTATTT CATTTTCTCCTTTATACTCTGTATATTTAAGACTGATACATAGTCGAATCCCTTGGCTTAATATCCACCATTTTGTGCAG GAGGAGCGAGACAAGTTAGCTCGAAGTGAGACGTTTGCCATCAGAATTTCAAACATAGCAAATATGGTTCTTTTTGTTGC CAAAGTTTACGCATCATTAAGAAGTGGTTCCCTAGCCATCATTGCATCCACTTTAGACTCTCTTCTTGACCTCCTCTCTG GATTCATCCTCTGGTTCACTGCGTTTTCTATGCAAACACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAA CCATTGGTAAGTCGTTCTGATTAATATTCAGAATAGAAGTTTGTAAATCGTCTTGTGATCTTGCCAGTAACATGAAGAAA TGATGCTTCTTCGTTGCCTAATGTCGCTCACTCTCAGGATCTACTTTCTAATCAAATTAAACTTGAAGAATAAAACTTAG TCTACAGTTTGGTTGTGTGCACATATGTTCCATAGATAGAGTGAAAGTTCATTATTAGAAGAGATGATACTTCTTTGTTT CCCAATCAAAAGAACTCTTAGGATTTAAACTGTAATATCAAGAAAGAAAAAACTACTTAGCTTGCAGTTGGGTTGTGTTA TGCTCCATAGATAAAGTACAAAGTGAAACTTCATTTTAAATTAGTTAATGTTCTGATGAATAATTACAAAAGCATCTTGA TATGAAATTTAAAACTGCATGCAGGGAATTCTTGTTTTTGCCTCTGTCATGGCGACACTGGGACTGCAAATAATTTTGGA GTCTATCCGGACATTATTATCCTCTGTAAGTTTATTTTGCTACATTTCTAGAGGTGAAGTGGACATCAAACAAATAGAAG ATAAAACTATGATGCTTCATTTAGTTTGGTGGATCTCATTAAAATCTAGTTAGCTCTAATGGATCTCGCAATGTCATTTC TAGGACACTGCCTTCAGCTTGACCAGGGAACAAGAGCACTGGGTTGTGGGTATTATGCTTTCAGTGACTTTGGTGAAGTT CCTGCTGATGATTTATTGCCGCTCTTTTACAAATGAGATAGTCAAAGCCTATGCTCAGGATCACTTCTTTGATGTGATCA CTAATGTTATTGGCCTCATTGCTGCACTTTTGGCTAACTATTTTGATGATTGGATGGATCCTGTTGGTGCTATCATTGTA AGTGAATACTTTCCCCAAGGTTTTCAGTTGCTATTTATAGCCTTAGGAAAGGATTTATTTGCCTGCTATCAAATTGTCCA TGAATTAACAGACATGTCTAATTCATTTCGAGGGATAGAAGCCGAAGGTAATGAACCAAAGTATACACATTGTATTTCAA GTAATCTCCTCCATCAAGCGCTTAATAAGTTAAAAAATTTGAGATCTCAGATTCCTTAAGATGTAATTCTCATTTCATGA CATCAATGTTAGGTGATTATAAATATCTATTTAGCTCATCATAATTTCTGCAAACTTCTTCATGAAATTTGTGCATCTTA TGATGGTTTGATACATCTCTTTTTATGCCAGATTCTTGACTAAGATATAGGGACCAAGCACTATATTTGGCTGAAAACAA TTTCTTATTAATATTTGTTTTTCATATGTAGCAAATGTTTAGGAGAGTTTTATGCAAATTATTTATGACCAATCTAAAAG CTGTTTTGAGCTTATTTTCATAACCTCCTCAAATTAGTTTTTGAATAAATGCTTATACCTATCTATAACCTATTTTGAGT TTATTTCAATAAGCTTATCAAATTAGCTTATGAATAAGCGCTTATCAGCCTTACATGATAATCGTGTATTGTCGCGTTTA ATTAAGTTGTTTACCCGATCACACCCTTTTGTCATCCTCTTATGGCTGGTCTCATGTACTTGTTTTACTTACATGTAATT CTTCTACCGCAGCTGGCTTTGTATACCATTCGCACATGGTCATTGACAGTGTTGGAGAATGTGAATTCCTTGGTTGGAAA ATCAGCTGCACCAGAGTATCTTCAGAAACTTACATACCTCTGCTGGAACCACCACAAGGCTGTGAGGCACATTGACACCG TTAGGGCTTACTCATTTGGCTCTCACTACTTTGTTGAGGTTGATATCGTCCTGCCATCAGATATGCCCTTGCAAGAGGCT CATGATATTGGGGAATCTCTACAAGAGAAGCTTGAGCTTTTGCCTGAGATCGAGCGTGCTTTTGTTCATCTTGATTATGA GTTCAGTCACAAACCTGAGCATGCCCAAGCACACAATTAG
CDS sequence (LotjaGi1g1v0533400.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCCTTAGCCGAGCGTGGATTTATTCCTGGAATGTCAAAGGAGGAGCGAGACAAGTTAGCTCGAAGTGAGACGTT TGCCATCAGAATTTCAAACATAGCAAATATGGTTCTTTTTGTTGCCAAAGTTTACGCATCATTAAGAAGTGGTTCCCTAG CCATCATTGCATCCACTTTAGACTCTCTTCTTGACCTCCTCTCTGGATTCATCCTCTGGTTCACTGCGTTTTCTATGCAA ACACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGGGAATTCTTGTTTTTGCCTCTGTCATGGC GACACTGGGACTGCAAATAATTTTGGAGTCTATCCGGACATTATTATCCTCTGACACTGCCTTCAGCTTGACCAGGGAAC AAGAGCACTGGGTTGTGGGTATTATGCTTTCAGTGACTTTGGTGAAGTTCCTGCTGATGATTTATTGCCGCTCTTTTACA AATGAGATAGTCAAAGCCTATGCTCAGGATCACTTCTTTGATGTGATCACTAATGTTATTGGCCTCATTGCTGCACTTTT GGCTAACTATTTTGATGATTGGATGGATCCTGTTGGTGCTATCATTCTGGCTTTGTATACCATTCGCACATGGTCATTGA CAGTGTTGGAGAATGTGAATTCCTTGGTTGGAAAATCAGCTGCACCAGAGTATCTTCAGAAACTTACATACCTCTGCTGG AACCACCACAAGGCTGTGAGGCACATTGACACCGTTAGGGCTTACTCATTTGGCTCTCACTACTTTGTTGAGGTTGATAT CGTCCTGCCATCAGATATGCCCTTGCAAGAGGCTCATGATATTGGGGAATCTCTACAAGAGAAGCTTGAGCTTTTGCCTG AGATCGAGCGTGCTTTTGTTCATCTTGATTATGAGTTCAGTCACAAACCTGAGCATGCCCAAGCACACAATTAG
Protein sequence (LotjaGi1g1v0533400.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDALAERGFIPGMSKEERDKLARSETFAIRISNIANMVLFVAKVYASLRSGSLAIIASTLDSLLDLLSGFILWFTAFSMQ TPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESIRTLLSSDTAFSLTREQEHWVVGIMLSVTLVKFLLMIYCRSFT NEIVKAYAQDHFFDVITNVIGLIAALLANYFDDWMDPVGAIILALYTIRTWSLTVLENVNSLVGKSAAPEYLQKLTYLCW NHHKAVRHIDTVRAYSFGSHYFVEVDIVLPSDMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEFSHKPEHAQAHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 316 | 316 | 3.3E-207 | – | |
| PANTHER | 1 | 316 | 316 | 3.3E-207 | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SUPERFAMILY | 24 | 224 | 201 | 2.22E-40 | ||
| TMHMM | 26 | 48 | 23 | - | – | |
| Gene3D | 27 | 223 | 197 | 9.8E-31 | ||
| Phobius | 27 | 46 | 20 | - | – | |
| TIGRFAM | 29 | 304 | 276 | 7.2E-33 | ||
| Pfam | 30 | 223 | 194 | 2.0E-31 | ||
| Phobius | 47 | 51 | 5 | - | – | |
| Phobius | 52 | 76 | 25 | - | – | |
| TMHMM | 53 | 75 | 23 | - | – | |
| Phobius | 77 | 96 | 20 | - | – | |
| TMHMM | 96 | 115 | 20 | - | – | |
| Phobius | 97 | 115 | 19 | - | – | |
| Phobius | 116 | 136 | 21 | - | – | |
| TMHMM | 137 | 159 | 23 | - | – | |
| Phobius | 137 | 160 | 24 | - | – | |
| Phobius | 161 | 171 | 11 | - | – | |
| Phobius | 172 | 191 | 20 | - | – | |
| TMHMM | 172 | 191 | 20 | - | – | |
| Phobius | 192 | 196 | 5 | - | – | |
| Phobius | 197 | 216 | 20 | - | – | |
| Phobius | 217 | 317 | 101 | - | – | |
| Gene3D | 226 | 304 | 79 | 6.3E-11 | ||
| SUPERFAMILY | 227 | 304 | 78 | 1.7E-16 | ||
| Pfam | 234 | 303 | 70 | 6.7E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0533400.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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