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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0538600 |
| Transcript ID | LotjaGi1g1v0538600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT5G59350.1 transmembrane protein; Swiss-Prot: sp|O00443|P3C2A_HUMAN Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha; TrEMBL-Plants: tr|V7B2Z4|V7B2Z4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0538600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106713446..106715642) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAACCATGATTAAATTCTTTATTAAAAACAGGAAGCATTGTAGGAAACTTTCTGATATGGAATCATTGTCCCTCCTA CATTGTCAGTTAGTAACATAACACCAAAGTACCACCAACTAGTGTTATGGGAAAAATCTTCCCCTATTTGAAGGATCTTA CATGTTTTGTTATATTAAAAATGTAATAATGTGGCATATTGACAAGTCATTTTCCTTTTCTTTCTGATCCCATGTGAGCT TCTCTTGAAGGAAGAGAACCACCAACCATAAGCCAGACAGGTAAATGCATCACTCTCTCTCACCTGAACTCTCTTTCTAT AGTTATTTTCTGGCTCCTGGTTTTTCAGCACCTCCACAAAGTGGTTTATGGTTTAGGTGATCTTCCTTTCTCTTTTTCTC TTTTAACTTGTTTAAAAATGATACTATCTTTGAGGGCAATGATGGGACTAAAGGCTAAAGATTGAGGTGGTGTTCAATCT TAAGTGGGGTAAAAGCTAAAAGGCTCATGCTTATGATTTGCATGTGCTGCTTTTAAGAAGGAGAGAGAGTTTTTTGGTTG GCCCTTTTAGCAGATTGGTGTTCTTCACTTTGCAACCAAGGTTTGTTTTAATGTCAAGCTTTATTGGTGGGGATGGGGTG GGTGTAGTTACAATATTACATTGAATTCTAGTAAAAAATATATCTAGATTATCAGTGCTTGAGTTCAGAATCAAAGCATA GTGTTGTGCCTTGATACTATTTGTAAATTGTCCTGTAAGAGCTTTTCATCTACTTTTAAATGTGTCTTTCTCTTTATTGA AATTAAGTTTTGATTCTGTTTTTGTAATCCCTTAGTCAGTTTGATATGAGTATCTAGATTAGGTACTAATTGCGTTGGAC ATTGAGCATTGAAAAAGTTGAAGTGTAATTCAATGTTTTGAGAGAACAAAGATGAAATCTTTGAGTAGTGTAGGTCTTGG TCTGAGTATTGTTTTTGGTTGCCTTCTGTTGGCTCTGGTAGCTGAGGTTTACTACCTGTTGTGGTGGAAGAAGAGGATAA TCAACAGAGAGATTGAAAATGACTATGGTAGCCCTGTGAAGGAGCTTTTCAACATGTTCTGCTGGAAGAGACCATCATCA TCTTCTTTGAGGCAAAATGGTTTTACTCCACCAGAGCTTTGTTCTTCAGTGAGAATTGGTGAAAATCTTGTTTACAACCC AGAATTGCAAGCTCAGTCACAAACTAACAAGGGTTTTCTTTTCAAACCCTTTGGGGAAGATGGGTTGGAAGAAGAATACA TGAGGCAACAGGGTCTCTTTGGTCCTCCAAGGTTCTTGTTCCCAATAATTGAAGAATCAAAGGAGGATCTAGAATCTCAG GATAGCAAGTCTAGAGGTAGAAGCTTGGGTGATTTGCTAGTTGTGGAGACACCATATTTGACACCTAATGCATCTCCACC ATTTTTCACTCCACCTTTCACTCCTATCAGCCCCTATAGCCAGCATGGATTCAATCCTCTTTTTGAATCAGCAACTGATG CAGAGTTCAACAGAATGAAGTCATCACCTCCTCCAAAATTTAAGTTCTTACAAGAAGCAGAAGAGAAGCTTAGAAGAAAA TTACAAGACAATGAGGGAAATGGAGATGAGGTTTCCATCACAGTAGTTGTTGACAAGAAAAGTGAAAGGGATGTGAATCA CCAATCTCATCTACCTCAGTACCATTCAAGCACTTCACAGGTACTTCCCTTAGGTTCTTGACACCACCACCTCTCAGCTT AACAAACCAGAAGAAACCATCTAACACCAAAGTTCTGCAGCCACCAGGAGCTTTTTTTATTTTTTTTCCTCTTCATTAAG CTTTCTAATTGCATTGTGAAGAATTCCACTTTTTTTACTTTGGAATTTGTTTCTCCCCTGTTGAGTTGTTTTGGAATGGA GCTATAGTTTATAACATGTTTTAATGAGCTTATATTTCTTCAGAAATCAGAATCATCCATTCTAGCACTCAAAAGCTAGG TAAGAGTTTCTCTCCTGTATTGATGTTAGTTGTAGAATCAATTGTAGAATAATTTCCAAAAATGCTATAAATCAGCTGAG CTAGTTGTGGCATGTAGCATATGTGGACATTATTTTCTTGCATTAATGCTTAAAAGGTGGATTAATAACAAATTCATGTG GTTTTTAATTTTTATTGAACTTTAGTTGCTCACAAAT
CDS sequence (LotjaGi1g1v0538600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCTTTGAGTAGTGTAGGTCTTGGTCTGAGTATTGTTTTTGGTTGCCTTCTGTTGGCTCTGGTAGCTGAGGTTTA CTACCTGTTGTGGTGGAAGAAGAGGATAATCAACAGAGAGATTGAAAATGACTATGGTAGCCCTGTGAAGGAGCTTTTCA ACATGTTCTGCTGGAAGAGACCATCATCATCTTCTTTGAGGCAAAATGGTTTTACTCCACCAGAGCTTTGTTCTTCAGTG AGAATTGGTGAAAATCTTGTTTACAACCCAGAATTGCAAGCTCAGTCACAAACTAACAAGGGTTTTCTTTTCAAACCCTT TGGGGAAGATGGGTTGGAAGAAGAATACATGAGGCAACAGGGTCTCTTTGGTCCTCCAAGGTTCTTGTTCCCAATAATTG AAGAATCAAAGGAGGATCTAGAATCTCAGGATAGCAAGTCTAGAGGTAGAAGCTTGGGTGATTTGCTAGTTGTGGAGACA CCATATTTGACACCTAATGCATCTCCACCATTTTTCACTCCACCTTTCACTCCTATCAGCCCCTATAGCCAGCATGGATT CAATCCTCTTTTTGAATCAGCAACTGATGCAGAGTTCAACAGAATGAAGTCATCACCTCCTCCAAAATTTAAGTTCTTAC AAGAAGCAGAAGAGAAGCTTAGAAGAAAATTACAAGACAATGAGGGAAATGGAGATGAGGTTTCCATCACAGTAGTTGTT GACAAGAAAAGTGAAAGGGATGTGAATCACCAATCTCATCTACCTCAGTACCATTCAAGCACTTCACAGGTACTTCCCTT AGGTTCTTGA
Protein sequence (LotjaGi1g1v0538600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSLSSVGLGLSIVFGCLLLALVAEVYYLLWWKKRIINREIENDYGSPVKELFNMFCWKRPSSSSLRQNGFTPPELCSSV RIGENLVYNPELQAQSQTNKGFLFKPFGEDGLEEEYMRQQGLFGPPRFLFPIIEESKEDLESQDSKSRGRSLGDLLVVET PYLTPNASPPFFTPPFTPISPYSQHGFNPLFESATDAEFNRMKSSPPPKFKFLQEAEEKLRRKLQDNEGNGDEVSITVVV DKKSERDVNHQSHLPQYHSSTSQVLPLGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 267 | 267 | 2.0E-105 | – | |
| PANTHER | 1 | 267 | 267 | 2.0E-105 | – | |
| ProSiteProfiles | 1 | 17 | 17 | 5.0 | – | |
| Phobius | 6 | 30 | 25 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 31 | 269 | 239 | - | – | |
| Coils | 210 | 233 | 24 | - | – | |
| MobiDBLite | 223 | 269 | 47 | - | – | |
| MobiDBLite | 238 | 252 | 15 | - | – | |
| MobiDBLite | 253 | 269 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0538600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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