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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0539000 |
Transcript ID | LotjaGi1g1v0539000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Dof zinc finger protein; TAIR: AT3G55370.1 OBF-binding protein 3; Swiss-Prot: sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6; TrEMBL-Plants: tr|A0A0K8K634|A0A0K8K634_CAJCA Dof protein; Found in the gene: LotjaGi1g1v0539000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106754023..106756318) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAATACAAACAAAAAGAAGAGAGAGGGGAGAGGATGCAAGAGGGGGAGAAAAGGAAAAGAAAAAAAAAAGATGA AAACATAAACAAAACACACCCCCACAAACACTCCTTTATCTTTTCCCTCTCCTTGTGGTGATCTCTTTCTCTCTGCAACT CTCTCATGTTGATGTGATTCTCCACCTCCAAAGAAAGAACCCATCAAACTTTTGCTAAAGAAAGAAAAGAAAAGCTCAAG CAGCCAGCCATGGTCTTCCCGTCCCTTCCAATCTACCTAGATCCACCCAACTGGCCACAACAACAGGTAATCATCAAATT AATCATGAATTATATAATTCTTTCATTCATTCTCTTCCATATTTCCTTTCCTTAATTTCTTCTTTCTTTAATTATAGCTT CTTCATCAATAAAGCTAAGAACATATATAGTTAATCACAAACAAAAATATTCCTTCACACTTTATCAATCTTTTTTCCCC TTGAATATACCTTATGAACGTACACACAAATATTCAATTATTTAGCTTCTTTATTTTTTTTCTCATTTTTGTTTTCTTAC ACTTTTTTGCTGAATCACAGCAACCTAATAATCAGCAAGTCGGAATTTTCCCCCAGCAAAATTCACCACGACCGCCGCCG CCACAACCACCACCTTCAACTGACATAGTTGGAGGTGGTGGTGGTACTGGCGGCGGCTACCAGGGCTCTATCAGACCAGG ATCAATGGCGGATCGAGCTAGGTTAGCCAAGATACACCAGCCTGATGCAACACTCAAGTGTCCGCGGTGTGAATCCACCA ATACCAAGTTCTGTTACTACAATAACTACAATCTCTCACAGCCACGCCACTTCTGCAAGACATGCCGCCGGTACTGGACC AGAGGGGGTGCGCTGAGAAATGTTCCAGTTGGAGGTGGCTGCAGAAGGAACAAGAGAAGCAAAGGAAACAACTCAAAGTC TCCTATGAAATCTGATCATCGCCAAGGTGCTAATAATGGTTCTAGCTCTACAAGTGCTAACTCTTCTTCTAATGGAATCT CCACTAATGCTATGGTTGGTCATTTGCAAACTCAAACACCAACAACCCAATTTCCATTCTTGGCATCTTTACAACATTAT AATAGTGACTATGTTTCTGGGAATATTGGTTCACATTTTGGGACAAGAAATGGCAATGGTACTAGTAGTGGAAGTGATAT TGGTGAGTTTCAAATTGGTGTGGGTTCATCAAGTGGTAACAATGGTGGATCTTTGTTGTCGCCAAATGGCCTTGGTGAGC AATGGAGGTTGCCAAATTTACAACAAATTCATCATCAGCATCAGAGTCAGCAGCAACAGCAGCAGCATCACCAGTTCCCT TTCTTAACTAATGTGGAACCGCAAATTGGGTTGTTTCAGTTTGGTGGAGAAAACAATGCTGATCATGGAGGAAGGTTTAA TAGTTCTAAGGCAATAGATTCTTCTAGTGTGAGTGGGATGGTGATGCCTCAGCATGATAACACTGTAAAAGTGGAAGGAA ATGAAGGGTTGAATTTGCCAAAAAATCTCTTGAGTATTTCAGGAAATGATCCATTTTGGAATAATGGAAGTGGCAATGCA TGGAGTGAAGAAGCTCCTAGCTTTGCTCCCTCGCCGAACCACTACTTGTGATCCTTGGAATTGGCTAGACATAGCAGGTT TGGATCAGCTTCTTTTTTTCCTCAGAATTAATTCTTACACTTGGGATCACATCAACATTATATTTTCCCAGGATTGATTT TGTCTTTAGAACAGAAGAATTTCCAAACATGCAACAACTATAGATTCTTAATTATCATCATAGACATGATCCAAGGTATT TAAGAGAGATAGAACCAATCACTTGTTAGCCATGGAACGGAATTCATGCACCCTTTATGAGTGTTACGTGGATATATATG GGAAGGAAGCATCAGGGAAATTTGTACTATTTCAAGAAGCCAAAGTGGTATGCTACATGAAATTAAGTTATATATTTCTC CGTCGATGGATATGATCAAAATTTATAGTATTTGTAGTGCTCCAATTGTATCGACGTGTTGAAAGAAGTATTGGGTGTAA TTGTTTACTTAATTTGCATGTCGTTATGACATCAAAGGTTAAGCTGATATTACTAATTGTGTGCATCTATATGAGGACTA GAAGGTTTATTATGTGATAATTAATGTAGTTTTTACTATTTGCTTAATGACATTTTTCCGCAGCCAAAGGTGTAATATTG AGAAACAATCTAGTGTATCACTTATCTTTTAAATTTTGTTTTTGCTTTCACGTGTT
CDS sequence (LotjaGi1g1v0539000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCTTCCCGTCCCTTCCAATCTACCTAGATCCACCCAACTGGCCACAACAACAGCAACCTAATAATCAGCAAGTCGG AATTTTCCCCCAGCAAAATTCACCACGACCGCCGCCGCCACAACCACCACCTTCAACTGACATAGTTGGAGGTGGTGGTG GTACTGGCGGCGGCTACCAGGGCTCTATCAGACCAGGATCAATGGCGGATCGAGCTAGGTTAGCCAAGATACACCAGCCT GATGCAACACTCAAGTGTCCGCGGTGTGAATCCACCAATACCAAGTTCTGTTACTACAATAACTACAATCTCTCACAGCC ACGCCACTTCTGCAAGACATGCCGCCGGTACTGGACCAGAGGGGGTGCGCTGAGAAATGTTCCAGTTGGAGGTGGCTGCA GAAGGAACAAGAGAAGCAAAGGAAACAACTCAAAGTCTCCTATGAAATCTGATCATCGCCAAGGTGCTAATAATGGTTCT AGCTCTACAAGTGCTAACTCTTCTTCTAATGGAATCTCCACTAATGCTATGGTTGGTCATTTGCAAACTCAAACACCAAC AACCCAATTTCCATTCTTGGCATCTTTACAACATTATAATAGTGACTATGTTTCTGGGAATATTGGTTCACATTTTGGGA CAAGAAATGGCAATGGTACTAGTAGTGGAAGTGATATTGGTGAGTTTCAAATTGGTGTGGGTTCATCAAGTGGTAACAAT GGTGGATCTTTGTTGTCGCCAAATGGCCTTGGTGAGCAATGGAGGTTGCCAAATTTACAACAAATTCATCATCAGCATCA GAGTCAGCAGCAACAGCAGCAGCATCACCAGTTCCCTTTCTTAACTAATGTGGAACCGCAAATTGGGTTGTTTCAGTTTG GTGGAGAAAACAATGCTGATCATGGAGGAAGGTTTAATAGTTCTAAGGCAATAGATTCTTCTAGTGTGAGTGGGATGGTG ATGCCTCAGCATGATAACACTGTAAAAGTGGAAGGAAATGAAGGGTTGAATTTGCCAAAAAATCTCTTGAGTATTTCAGG AAATGATCCATTTTGGAATAATGGAAGTGGCAATGCATGGAGTGAAGAAGCTCCTAGCTTTGCTCCCTCGCCGAACCACT ACTTGTGA
Protein sequence (LotjaGi1g1v0539000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFPSLPIYLDPPNWPQQQQPNNQQVGIFPQQNSPRPPPPQPPPSTDIVGGGGGTGGGYQGSIRPGSMADRARLAKIHQP DATLKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGNNSKSPMKSDHRQGANNGS SSTSANSSSNGISTNAMVGHLQTQTPTTQFPFLASLQHYNSDYVSGNIGSHFGTRNGNGTSSGSDIGEFQIGVGSSSGNN GGSLLSPNGLGEQWRLPNLQQIHHQHQSQQQQQQHHQFPFLTNVEPQIGLFQFGGENNADHGGRFNSSKAIDSSSVSGMV MPQHDNTVKVEGNEGLNLPKNLLSISGNDPFWNNGSGNAWSEEAPSFAPSPNHYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 66 | 66 | - | – | |
PANTHER | 1 | 374 | 374 | 6.9E-142 | – | |
PANTHER | 1 | 374 | 374 | 6.9E-142 | – | |
MobiDBLite | 12 | 31 | 20 | - | – | |
MobiDBLite | 32 | 46 | 15 | - | – | |
Pfam | 82 | 138 | 57 | 8.6E-33 | ||
ProSiteProfiles | 84 | 138 | 55 | 29.86 | ||
ProSitePatterns | 86 | 122 | 37 | - | ||
MobiDBLite | 126 | 174 | 49 | - | – | |
MobiDBLite | 148 | 174 | 27 | - | – | |
MobiDBLite | 214 | 251 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0539000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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