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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0539800 |
| Transcript ID | LotjaGi1g1v0539800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine/histidine-rich C1 domain protein; TAIR: AT2G16050.1 Cysteine/Histidine-rich C1 domain family protein; Swiss-Prot: sp|P11346|KRAF1_DROME Raf homolog serine/threonine-protein kinase phl; TrEMBL-Plants: tr|K7K753|K7K753_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0539800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106825040..106826559) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTCTATTTTTATTCTCAGCTGTAAGGATTCATGTTAATAAAACAGTATTAAATTATAAATTAACGGAACTTCCTC TTGCCTGTGTTGCATGTCTATAAATAGTATAGTAATCTTTTGAATAGAAAACACAACTTATAGTAACTAGAAAAGCATGC GGTTTTCTCTTTTCCAAAAGTGCATCAACTAATTTTGTTTTTATCTTTGAATTTGCTTCTAAGTTCTAATTTTCTACCTT CTATGAACAGTTTTTGCTGGTTTCAACAACAGATTATAGAAGATATGATAGATCACCGCAGTCATCCACACCCATTACAC TTGAAGCCTCCAGGAACACCATACAGGTGCAGTGGTTGTCGAGAATTAGGGTTTGGATCCAGTTACTGTTGTGAAAACAG CTGGTGCGAATATATCCTCCATGAAGAGTGTGCAAATGTTGTTTCCTCGGTGCCTCATCGATTTTTCCCGAAGAGCTATT TCGAGTTCTATGAGAAAGCACCGGGAAACAGAGCTAGGTATTGTGATGCTTGTGGAAAGGATGTGAAAGGCTTTGTCTAC CATTGCTCGAACACTGGAAATGACTTGCATCCGCGCTGTTTAAACCTGAAAGATACTATTTCTGATGAAGATGGATGTGT CACACTGAAACTGTGTCAGGAGGTTCCCTCAAAGTGTGTAAAATGTAAGCATAGGAAGGTTGTGGAGAATAAAATTGAAG GTTGGTCTTACGTGTCTTCCATGGGGAATTGTTGCTATCATGTGTCTTGTTTCAAGGATTTGATTCTTGAGAACTGGAAT AAGGGTTATTTTTCTCGAGAAAGCAATTCGATTCAGGTGAGTGATGATCATGACCCGGAGTCTCAACTTGCACTCACAAG CATGGTGATGGTTCAAGGTGGAGGAAGCTCAAGGAGATCAAGGACTATAAAGATGTGGTGCAAGATTGGGGTGGTTGTGT TCAAGCTAATATTTTCAGCCATTTTTGGAAATCCTATATCTGCCATGGTTACTCTTGTGGAAGCCCTTGTTTCAAATTGA ACGTCTGAATTTAAAATCAGATTAGTTTGTGTGATGAATAAATTTTGTACCTAGGCGCTTGGATATATGGATCAAAATCT ATGTACTGTCCCCAACAGATCGAGTATCTTAATCCCACTTGGATAGTTCGTTAAGTTGATTTGGGTGTCTATTCTCTCAG GTTTTGGTTTTTTTGGGTGTTTCTATATTGTTGGTATGGCTTTAGCTTTGTGCTGTTGCTGTATTGGGGATTTTCCACTT TGTACTTGTTTATCTTTTTTTATTCTAGCTTTTGTTGGTCTATTGTCTTACCGGTAGCTTGTTCTTTGTCTTTAGACTTT TGCTGTGTTGTGTGCCTCACCAGAGGCAGAGGCTTGTTCCCTGGAATGTTTACCAAATCAGTTTTTCTCCTTTCCAAAAG AAAAATAATAATATTTTTTTTCTTGTTGCTTTTAGAGTTTAATTATTTTGGATTTGAGCTTCTATATATGTATGATAAAG
CDS sequence (LotjaGi1g1v0539800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAGTTTTTGCTGGTTTCAACAACAGATTATAGAAGATATGATAGATCACCGCAGTCATCCACACCCATTACACTT GAAGCCTCCAGGAACACCATACAGGTGCAGTGGTTGTCGAGAATTAGGGTTTGGATCCAGTTACTGTTGTGAAAACAGCT GGTGCGAATATATCCTCCATGAAGAGTGTGCAAATGTTGTTTCCTCGGTGCCTCATCGATTTTTCCCGAAGAGCTATTTC GAGTTCTATGAGAAAGCACCGGGAAACAGAGCTAGGTATTGTGATGCTTGTGGAAAGGATGTGAAAGGCTTTGTCTACCA TTGCTCGAACACTGGAAATGACTTGCATCCGCGCTGTTTAAACCTGAAAGATACTATTTCTGATGAAGATGGATGTGTCA CACTGAAACTGTGTCAGGAGGTTCCCTCAAAGTGTGTAAAATGTAAGCATAGGAAGGTTGTGGAGAATAAAATTGAAGGT TGGTCTTACGTGTCTTCCATGGGGAATTGTTGCTATCATGTGTCTTGTTTCAAGGATTTGATTCTTGAGAACTGGAATAA GGGTTATTTTTCTCGAGAAAGCAATTCGATTCAGGTGAGTGATGATCATGACCCGGAGTCTCAACTTGCACTCACAAGCA TGGTGATGGTTCAAGGTGGAGGAAGCTCAAGGAGATCAAGGACTATAAAGATGTGGTGCAAGATTGGGGTGGTTGTGTTC AAGCTAATATTTTCAGCCATTTTTGGAAATCCTATATCTGCCATGGTTACTCTTGTGGAAGCCCTTGTTTCAAATTGA
Protein sequence (LotjaGi1g1v0539800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSFCWFQQQIIEDMIDHRSHPHPLHLKPPGTPYRCSGCRELGFGSSYCCENSWCEYILHEECANVVSSVPHRFFPKSYF EFYEKAPGNRARYCDACGKDVKGFVYHCSNTGNDLHPRCLNLKDTISDEDGCVTLKLCQEVPSKCVKCKHRKVVENKIEG WSYVSSMGNCCYHVSCFKDLILENWNKGYFSRESNSIQVSDDHDPESQLALTSMVMVQGGGSSRRSRTIKMWCKIGVVVF KLIFSAIFGNPISAMVTLVEALVSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 234 | 234 | - | – | |
| SUPERFAMILY | 12 | 66 | 55 | 8.11E-9 | – | |
| PANTHER | 15 | 263 | 249 | 7.5E-96 | – | |
| PANTHER | 15 | 263 | 249 | 7.5E-96 | – | |
| Pfam | 20 | 64 | 45 | 7.7E-10 | ||
| SUPERFAMILY | 48 | 126 | 79 | 1.39E-12 | – | |
| Phobius | 235 | 259 | 25 | - | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 260 | 265 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0539800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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