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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0540200 |
| Transcript ID | LotjaGi1g1v0540200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock 70 kDa protein; TAIR: AT3G12580.1 heat shock protein 70; Swiss-Prot: sp|Q9LHA8|MD37C_ARATH Probable mediator of RNA polymerase II transcription subunit 37c; TrEMBL-Plants: tr|G7KZZ9|G7KZZ9_MEDTR Heat shock cognate 70 kDa protein; Found in the gene: LotjaGi1g1v0540200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106885029..106887064) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGGCAGGAACAGAACAATAGAGCTGAGATCATTTTCAACGAACAAGGAAATAAAACTACTCCTTCCTTTGTTGCTTT CACTGATACTCAAAGATTGATTGGTGATGCTGCCAAAAATCAAGCTGCAGCAAACCCATCAAATACTATCTTTGGTAAAA AAAACTTTTTTTTGGCCTTTCTGTCTTAATTTCCTTCATGGCTATTATTATTTCTCTGCTATGTTTTTATCAGAAAAAAC TAGTTATACATCAACACTGTTTTTACTTTCGCAGATGCAAAGAGGTTAATTGGTAGGAAATACAACGATCCCATTATTCA GGATGATATTAAGCTGTGGCCCTTTAAGGTCATTGCTGGAACTGATGAAAAACCCTCTATTGTTGTTAACTACAAGGGTG AGGAGAAGCGCCTTGTCCCTGAGGAAGTCTCATCCATGGTTCTGTCAAAGATGAAGGAGATTGCTGAGGCCTTTTTGGGG TCACCAGTGAAAAATGCAGTTATCACTGTGCCGGCTTATTTCAATGATTCTCAGCGAAAAGCCACCAAAGATGCTGGTGC TATTGCTGGCCTCAATGTTATGCGGATAATCAATGAACCAACTGCTGCAGGTCTTGCTTATGGCCTTCAGAAGAAATCTA GTTTTAATGAAAAGCGAAATGTGTTCATCTTTGATCTCGGTGGCGGCACATTTGATGTGTCTCTTCTCACAATAAAAGAT GATAATTTTGAAGTGAAGGCCACTGCTGGTGATACTCACCTTGGAGGAGAGGACTTTGACAACAGAATGGTGGATCATTT TGTTAAGGAGTTTAAGAGAAAGTACAAGAAGGATATTAGTGAGGACCCAAGAGCCCTGAGGAGGTTGAGAACTGCCTGTG AGAGGGCAAAAAGGACACTCTCATTTTCTGTAGATACCACAATTGAGGTTGATGCTTTATTTGTGAATACTGACTTCTCT TCAACAATTACTCGCGCCAGGTTTGAGGAACTCAACATGGATCTATTTATAAAGTGTATGGAGACAGTTGAGAGGTGTCT TAATGATTCTAAGATAGACAAGAGTGATATTGATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCCAAAGTTATGG AGTTATTGGAGGAATTTTTCAAGGGTAAGGATCTGTGCAAGAGCATCAACCCCGATGAGGCTGTAGCTTATGGTGCAGCT GTCCAAGCTGCTTTGTTGACTGAAGGTGTTAATAATGTTCCAAACTTGGTGTTGATGGATGTGACACCACTGTCTCTTGG TATAAACACAAAAGGAGATCTCATGAGTGTAGTGATTCCTAAGAATTCTACAATTCCTGTTAAGAACACACAAGTATACT CTACAATTGAGGATAACCAATTATCAGCCTTGATTGAGGTTTATGAGGGCGAGAGGACTATAGCAACTGAAAACAACTTG CTGGGTTTGTTTAATCTTTCAGTTCCTCCTGCTCTGCGAGGCCTTCCTATCAAAGTAAGCTTTGCTATAGATTTTGATGG TATATTAAATGTCTCTGCAGAGGAAGAAACCACTGGTAATAAAAAAGAGATTAGTATAACAAATGAAGATGGAAGGCTTT CAACTGAAGAAATTGAGAGAATGATTCAAGAAGCTGAGAGTTTCAAGGCTGAAGATATGAAGTTCCAGAAGAAGGTGAAA GCAGTGAATGCTGTTGATGATTATGTTTACAATATGAAAAGAGTAATGAAGGATAAGTCTGTTAGTTCTAAGCTTTCCCC GATGGACCAAGTCAAGATCAATTCAGCAATTTTAAAGGGGGAAAATTTGCTTGATGGTGAACAGCAGCAAGATGCGTTTG TGTTTGTGGACTTGTTAAGGGAGCTTAAGAACATGTTTCAACCTGCTATGGCCAAGATCAACAAGGGTCTGACTGATGAG GATAGTGATGAGGATTATTATTAAAAAATTGTTATAATTTTTTTGGCATGTTCTAATTTCTGTCTTTCATATTTCTAATG TTACATTGCTTGTTTTGCTTCTTTGATTACATATGC
CDS sequence (LotjaGi1g1v0540200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTGTCAAAGATGAAGGAGATTGCTGAGGCCTTTTTGGGGTCACCAGTGAAAAATGCAGTTATCACTGTGCCGGC TTATTTCAATGATTCTCAGCGAAAAGCCACCAAAGATGCTGGTGCTATTGCTGGCCTCAATGTTATGCGGATAATCAATG AACCAACTGCTGCAGGTCTTGCTTATGGCCTTCAGAAGAAATCTAGTTTTAATGAAAAGCGAAATGTGTTCATCTTTGAT CTCGGTGGCGGCACATTTGATGTGTCTCTTCTCACAATAAAAGATGATAATTTTGAAGTGAAGGCCACTGCTGGTGATAC TCACCTTGGAGGAGAGGACTTTGACAACAGAATGGTGGATCATTTTGTTAAGGAGTTTAAGAGAAAGTACAAGAAGGATA TTAGTGAGGACCCAAGAGCCCTGAGGAGGTTGAGAACTGCCTGTGAGAGGGCAAAAAGGACACTCTCATTTTCTGTAGAT ACCACAATTGAGGTTGATGCTTTATTTGTGAATACTGACTTCTCTTCAACAATTACTCGCGCCAGGTTTGAGGAACTCAA CATGGATCTATTTATAAAGTGTATGGAGACAGTTGAGAGGTGTCTTAATGATTCTAAGATAGACAAGAGTGATATTGATG ATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCCAAAGTTATGGAGTTATTGGAGGAATTTTTCAAGGGTAAGGATCTG TGCAAGAGCATCAACCCCGATGAGGCTGTAGCTTATGGTGCAGCTGTCCAAGCTGCTTTGTTGACTGAAGGTGTTAATAA TGTTCCAAACTTGGTGTTGATGGATGTGACACCACTGTCTCTTGGTATAAACACAAAAGGAGATCTCATGAGTGTAGTGA TTCCTAAGAATTCTACAATTCCTGTTAAGAACACACAAGTATACTCTACAATTGAGGATAACCAATTATCAGCCTTGATT GAGGTTTATGAGGGCGAGAGGACTATAGCAACTGAAAACAACTTGCTGGGTTTGTTTAATCTTTCAGTTCCTCCTGCTCT GCGAGGCCTTCCTATCAAAGTAAGCTTTGCTATAGATTTTGATGGTATATTAAATGTCTCTGCAGAGGAAGAAACCACTG GTAATAAAAAAGAGATTAGTATAACAAATGAAGATGGAAGGCTTTCAACTGAAGAAATTGAGAGAATGATTCAAGAAGCT GAGAGTTTCAAGGCTGAAGATATGAAGTTCCAGAAGAAGGTGAAAGCAGTGAATGCTGTTGATGATTATGTTTACAATAT GAAAAGAGTAATGAAGGATAAGTCTGTTAGTTCTAAGCTTTCCCCGATGGACCAAGTCAAGATCAATTCAGCAATTTTAA AGGGGGAAAATTTGCTTGATGGTGAACAGCAGCAAGATGCGTTTGTGTTTGTGGACTTGTTAAGGGAGCTTAAGAACATG TTTCAACCTGCTATGGCCAAGATCAACAAGGGTCTGACTGATGAGGATAGTGATGAGGATTATTATTAA
Protein sequence (LotjaGi1g1v0540200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSKMKEIAEAFLGSPVKNAVITVPAYFNDSQRKATKDAGAIAGLNVMRIINEPTAAGLAYGLQKKSSFNEKRNVFIFD LGGGTFDVSLLTIKDDNFEVKATAGDTHLGGEDFDNRMVDHFVKEFKRKYKKDISEDPRALRRLRTACERAKRTLSFSVD TTIEVDALFVNTDFSSTITRARFEELNMDLFIKCMETVERCLNDSKIDKSDIDDVVLVGGSSRIPKVMELLEEFFKGKDL CKSINPDEAVAYGAAVQAALLTEGVNNVPNLVLMDVTPLSLGINTKGDLMSVVIPKNSTIPVKNTQVYSTIEDNQLSALI EVYEGERTIATENNLLGLFNLSVPPALRGLPIKVSFAIDFDGILNVSAEEETTGNKKEISITNEDGRLSTEEIERMIQEA ESFKAEDMKFQKKVKAVNAVDDYVYNMKRVMKDKSVSSKLSPMDQVKINSAILKGENLLDGEQQQDAFVFVDLLRELKNM FQPAMAKINKGLTDEDSDEDYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 493 | 493 | 5.0E-228 | – | |
| SUPERFAMILY | 1 | 66 | 66 | 9.39E-24 | ||
| PANTHER | 1 | 493 | 493 | 5.0E-228 | ||
| Pfam | 1 | 487 | 487 | 6.3E-175 | ||
| Gene3D | 1 | 259 | 259 | 2.9E-118 | – | |
| PRINTS | 21 | 41 | 21 | 1.0E-49 | – | |
| Gene3D | 67 | 246 | 180 | 2.9E-118 | – | |
| SUPERFAMILY | 71 | 261 | 191 | 1.05E-64 | ||
| ProSitePatterns | 78 | 91 | 14 | - | ||
| PRINTS | 84 | 94 | 11 | 1.0E-49 | – | |
| Gene3D | 110 | 187 | 78 | 2.9E-118 | – | |
| PRINTS | 212 | 228 | 17 | 1.0E-49 | – | |
| ProSitePatterns | 215 | 229 | 15 | - | ||
| PRINTS | 244 | 264 | 21 | 1.0E-49 | – | |
| Gene3D | 262 | 387 | 126 | 2.7E-44 | ||
| SUPERFAMILY | 267 | 421 | 155 | 4.58E-47 | ||
| PRINTS | 270 | 289 | 20 | 1.0E-49 | – | |
| PRINTS | 349 | 365 | 17 | 1.0E-49 | – | |
| Gene3D | 388 | 491 | 104 | 1.6E-23 | ||
| SUPERFAMILY | 416 | 490 | 75 | 6.47E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0540200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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