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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0547800 |
| Transcript ID | LotjaGi1g1v0547800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bidirectional sugar transporter SWEET; TAIR: AT2G39060.1 Nodulin MtN3 family protein; Swiss-Prot: sp|Q9FPN0|NEC1_PETHY Bidirectional sugar transporter NEC1; TrEMBL-Plants: tr|I3T4N0|I3T4N0_LOTJA Bidirectional sugar transporter SWEET; Found in the gene: LotjaGi1g1v0547800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107783544..107786294) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTGATTCATAATTTTTAATGCTTTTAAAAGAGAGAGTTTTGTGAGACAAAAAAATGGTATACGTACATGAATGTGGT GGTCCTGGAGGACAATCATACAAGTTATCCAATGTGTATATATATGGAAGCTAGCAAGCTTTGTTGAAGCACAAATTGTC CTCCTACTCATACCGCACAAAAGGCAAAGCTTTCCCCCAACACTTAGCTACCAAATACCACAACCTCCAAAATGATTTCA ATTTCTGAACGTGAGATGGTTTTAATCTTTGGTCTCCTAGGTATTAATTTGATTTGTATTCCAACCATTTCATAGAATCA TTTTCTAACCTTTATGTCATGCAATGATGCAAATATCTTATAGCATGTTTGGATCAGATTCTCTCGCCCAAGAATCAATT ATGTCACTCAAAAGATACTCACAAGCTTCTTCTCATAATTGATTTTGACTATAAAACTAATAGTAAATGAGTTTCCAAAC AGGCACCTTAAACATGTTTTGATTTTGAGGAGAGTGTGGGAATTAATTTTGAGGAAATTTAAGCTTCTGAGTGCCAGAAT TGATTTTGAGAAAACATAAACTAATCCCTGATCCAAACATGATATAGTTACTCTTTTTGTGTGTAATTCCAATGGGTCTA GCAAAATGTCTAGTCATCTTTGTTTTGTAACTTCTTATAATCTCAAAGTTTTCATTACAGCATGAGTGTGATGCATGTAA CAATAGTATAGCTTTCAATTTTGCCTATTACCTTATCTATTTTTTAATCTATTCTTATCTTGGTCCTTCACAGCTTCACT GATGTTCTCTGTTTTGTTCTTGTCTATAGGTAACATTGTGTCCTTCATGGTGTTCTTAGCACCCTTGTAAGTCCCTTTTA CTAGCAAAATAATATTTTAGTATGAATATCACTCACACAATGAAACACTATATATAAAAAAATTATATGTCTCTTGCAGG CCAACCTTCTATACAATTTACAAGAAAAAATCATCTGAAGGGTTCCAGTCAATCCCATATGTGGTTGCACTTCTAAGTGC AATGTTGCTGCTATATTATGGTTTCCTCAAGACCAATGCACTCTTGATTATCACCATCAACTGTATTGGATGTGCTATAG AAGTTTCATACCTAATGATGTACATTATATATGCTCCCAAGAAGCAGAAGGTGAACACAGATGAAACTACTTGTCTCTTG ACCTAAAATTATACTATAATGATGTTAAAATAACATTACAAATTTCTTCAAGAGTCTTCTAAAGCAACTATACCTTGGCA AGCTTATTATCAGTAATGATACTTAGATGTCCATAAATTATTTTCCTATTATTATTGACGCGTGGAAATTAATGTTTTTT CATGAATTGCAGATATCCACCTTGTTATTGATACTAATGGCAGACATAGGAGGTCTTGGCTTGACCATGATAATCACCAT GTTTGTTGTGAAGAGTGCTGAGCGTGTTCATGCTGTTGGATTGATTTGCGCCATTTTTAACATTGCGGTCTTTGCTGCTC CCTTAAGCATCATGGTACTTTCTGCTTTCTCCATTCATCTTATATAGTTTGACATGCAAATTTGCATGTTGATTATCACG ATTAATTAGCATCTTGTTCTTCTTATGCATATAATAACAACATTTGAAAATTTTCCACATGAATTGCAGAGAAAAGTCAT CAAAACCAGAAGTGTAGAGTACATGCCATTTTCCTTGTCCTTGTTTCTTACCCTCTGCGCCACCATGTGGTTTTTCTATG GGCTCTTTGACAAGGATAACTACATCATGGTGAGGAATAACACACACACATATGGATCTGCAATCCGTTTAATAACTTTA TTATAGAATCTGAATCTAATAAATTCAACTGTTGAATTATATGATATCAACATAATGATCTTGCACATCAAATTTTAGTT AAATCAGATATTCTTATGCATCTAATCTTATAGTTCATATTTGCTTATATTTTAGAAAGTATAATGTCCATTAAATTAAA GTTTTCTGACAAAATATCAAATGACTTTAATTTGTTTTGAAATTTTGTACACTTGTCTAGTGAATTAAAACTTTCTATTA ACCAGATAAGTTCATATATATTCTATAAAAAGTTATTAAGAAGAGTAAATTTGACAAGAGTTACTCCTGGAGTTCTTCAT CTTGTTAGTTTTCTCTTGTATGCTTGAAAGTAAAACTGATGAATTTCTTGTTCTTTGCAATCATCAGATGCCAAATGTGC TAGGATTTTTGTTTGGCATCTCCCAGATGATCTTATACATCATATACAAGAATGCTAAGAAGAAAGTAGAAGTTGAGGCT ACAGAGCAACAAGAATGGGGGAATACAGAGAAACCTGCACAGCATAGCAATGATGGGAATAATAAACTTGTTCTCCCTTC AGTGGTGGAAATGAAAGAGAACATAGTTTGATATTGCTAAGGACTGTATATATAGGGTCTAGGATAAATATGCTTAGTAT TGATGAAATAATGTCTCTTATCTAATTACTCTGCTGTACTAGGGACTATTGCCACTTTATAATTGGCATGCAATGCCCAT GTAGTAGACTAATTATTATAGTTCTAGTTAAAGTAACTATGAGTTTATATGGTGTGTTTGAAATTGAAGTTCCAACAAGA AGGTCAAATTATGCATGTTGAAAGCAACACTAAAGATTCCAGGTGTTTCTTTGGATAAATAGAAGATGGAGAAACTCGAA CATATCATAAATATTATAAAGTAATTTATAC
CDS sequence (LotjaGi1g1v0547800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCAATTTCTGAACGTGAGATGGTTTTAATCTTTGGTCTCCTAGGTAACATTGTGTCCTTCATGGTGTTCTTAGC ACCCTTGCCAACCTTCTATACAATTTACAAGAAAAAATCATCTGAAGGGTTCCAGTCAATCCCATATGTGGTTGCACTTC TAAGTGCAATGTTGCTGCTATATTATGGTTTCCTCAAGACCAATGCACTCTTGATTATCACCATCAACTGTATTGGATGT GCTATAGAAGTTTCATACCTAATGATGTACATTATATATGCTCCCAAGAAGCAGAAGATATCCACCTTGTTATTGATACT AATGGCAGACATAGGAGGTCTTGGCTTGACCATGATAATCACCATGTTTGTTGTGAAGAGTGCTGAGCGTGTTCATGCTG TTGGATTGATTTGCGCCATTTTTAACATTGCGGTCTTTGCTGCTCCCTTAAGCATCATGAGAAAAGTCATCAAAACCAGA AGTGTAGAGTACATGCCATTTTCCTTGTCCTTGTTTCTTACCCTCTGCGCCACCATGTGGTTTTTCTATGGGCTCTTTGA CAAGGATAACTACATCATGATGCCAAATGTGCTAGGATTTTTGTTTGGCATCTCCCAGATGATCTTATACATCATATACA AGAATGCTAAGAAGAAAGTAGAAGTTGAGGCTACAGAGCAACAAGAATGGGGGAATACAGAGAAACCTGCACAGCATAGC AATGATGGGAATAATAAACTTGTTCTCCCTTCAGTGGTGGAAATGAAAGAGAACATAGTTTGA
Protein sequence (LotjaGi1g1v0547800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISISEREMVLIFGLLGNIVSFMVFLAPLPTFYTIYKKKSSEGFQSIPYVVALLSAMLLLYYGFLKTNALLIITINCIGC AIEVSYLMMYIIYAPKKQKISTLLLILMADIGGLGLTMIITMFVVKSAERVHAVGLICAIFNIAVFAAPLSIMRKVIKTR SVEYMPFSLSLFLTLCATMWFFYGLFDKDNYIMMPNVLGFLFGISQMILYIIYKNAKKKVEVEATEQQEWGNTEKPAQHS NDGNNKLVLPSVVEMKENIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 3 | 241 | 239 | 2.1E-120 | – | |
| PANTHER | 3 | 241 | 239 | 2.1E-120 | – | |
| TMHMM | 11 | 33 | 23 | - | – | |
| Phobius | 12 | 35 | 24 | - | – | |
| Pfam | 12 | 97 | 86 | 5.8E-27 | ||
| Gene3D | 14 | 108 | 95 | 4.8E-14 | – | |
| Phobius | 36 | 46 | 11 | - | – | |
| TMHMM | 46 | 65 | 20 | - | – | |
| Phobius | 47 | 64 | 18 | - | – | |
| Phobius | 65 | 69 | 5 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 70 | 91 | 22 | - | – | |
| Phobius | 92 | 102 | 11 | - | – | |
| Phobius | 103 | 125 | 23 | - | – | |
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 126 | 130 | 5 | - | – | |
| Gene3D | 128 | 228 | 101 | 1.5E-20 | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 131 | 152 | 22 | - | – | |
| Pfam | 133 | 218 | 86 | 2.3E-30 | ||
| Phobius | 153 | 163 | 11 | - | – | |
| Phobius | 164 | 186 | 23 | - | – | |
| TMHMM | 164 | 186 | 23 | - | – | |
| Phobius | 187 | 191 | 5 | - | – | |
| TMHMM | 191 | 213 | 23 | - | – | |
| Phobius | 192 | 213 | 22 | - | – | |
| Phobius | 214 | 260 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0547800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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