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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0552100 |
| Transcript ID | LotjaGi1g1v0552100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TVP38/TMEM64 family membrane protein; TAIR: AT1G44960.1 SNARE associated Golgi protein family; Swiss-Prot: sp|Q55909|Y305_SYNY3 TVP38/TMEM64 family membrane protein slr0305; TrEMBL-Plants: tr|I3S5J9|I3S5J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0552100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108363857..108367142) extracted from Lotus japonicus Gifu genome v1.2.
GCTAGATGTAATATTAAGAGTTGAATAACTATATATTGTAATAAAATATTAATAAACCAATAACATTGACCAAAAAATAA CATTGACTAAAAATGGCAGATCGTAATGTGGGATGCGTCAAGTGTCGACATTCGAGTAGCGAGGAAAGAAGAAGGTGGAA AGCAAAATGGGGCGGTGGTGGCTGAAGGTTGCGGTGGTGGTGGCGATAGTGGCGGCGTTATGGAGAACCTGGAATTCGAA CGGATCATGGGATAAGGAAGCAGCGCTGAAATGGATGAGTGAATGGTCAGAGAGATTGGGGGTTTGGGCAATTCCTCTCT TCATCTCCCTCCACACTCTCTCCATCGCTCTCTGTTTGCCTTCTGCTATCTTCCTCGAAACCGGCGCTTCCATCCTCTTC GGCTTCTTCCCTTCCGTTCTCTGTGTCTTCTCCGCCAAGATCCTCGCCGCCTCTCTCTCCTTCTGGATCGGCAGGTCGAT TCCCTTTCTCTACCTCTCGATTCCGTTTCCATTTTCCCACTAGATTTAAATCAATCAATGTTCTGCTTGATCCATGTTGT TGGAATTGAAACTCATAGTATGATTGATTGATTGGTTTCACTATTTGAAGAATCACTTCTAGTTACAAGCTGCAAGTCTT AGTAAATGTTTGAAAATCATTGTATAATTTATTCTGAAGCCAAAATCAATTATAGGGAGAAGTTTCTGTGGGTAGAAAAT CAATTTATTTTTGGTGTCATAATTGATTCTTAGAAAAGAGAAGCTGATCCAAACATGTTATTGTTTATAGCGTGTTTGGC TTTGTGATAAGAAGTCCAGTAATCACTAATGGGAGAAGCTAAAATGTGTAGTTTCTAGAATTAATGCGATTTGAATTGTG TGTCCATCGTTAATCCAAACACACTCTAAGCGTTTTAGTGAATTGTGACTTGGATTTTGGTCAAATCGTAAAATCAAACA ACGATTAAATTAGGGTTTTAAATTGCGGTCGCTGTTGCCGCTGCGTTGCACAGCGAGACTCAAAACCCGTTACGGTTCGG TTGCAACTGCGGACTGCAATTTGAAAGCTGTAATAAATCGGTTAATGTAATATTCCTTTTACTATTTTGAAAGCTAATCA TGTCAATTTCTGGAATCAAATTGGTTGGTGAGGAAAGTTTCGAATTGACAACTTACATGATTTCTCTTCTGTTGTTAGCA TAGTCACCAATCTTGTTTCTCAAGATAGATAACTCACAAACTCTTTTGGAATTTTGGTTTCCCATTGCCTGAACTTTAGA ATAGTATCATGTCTATGTTTGGAAACTCAGTCGGTAGGTTTTTGCGTTGGGAGGAGAAGTGATTTTGAAAGAAGCCAGTG AAGTAGCTTTTATGAAAGGGAGAAATGATTTCAAAGTAAAACTAAACATGTTGTTAGTCTATTTGGCTTTTTACTTTGCA TTAGGGTTTAGGCTTTTTCATGGGCATCTCTTGTGCAAATATATTCTTAAGATATTGGAGGGTGACTTTGTGCTGGTAGT GGCTTCTATTATTGTTTTGTTTACAGAGGTTATATTCTTTGTCATTGGTCTTTCTGATTGTTTTGCACTTGTCATTTCAG TTCCTTCTAATCATAGGCATTTGTTATATTGTGCCACACACATGTTGAGGAATAACTGCTACTTTCTATTTTGTCTTTGC ATCCGTTCGTTTCATGAATATAAAATTATAAATTTCGAAAGTTGTTTATTAAATATTCAAATTTGAATCTTGTATAGTTG TATTTTGTTCGATATTGATTTCTGAAGTTGAATTTGATCTGCTGTAAATTATTTTGCTGTTCAACCCCTATAAATTAATA GCCCACTTTAGTTTGTAAAGTCATGAATCTTAGCCCTTGAGTAGAAAAATCTATTCTTCATTTTCCATGCACATGTGTTA AATGTTAATATGTTTCTTTTGATTTTCTCATCATAGTTGAGATTCCTAACATCCCTCTTTAAACTGAAATACAAAAGTAA GGACCCTTAATCATTGGCTATGAAAATCAATTGCTGATATTACATATACATGCATAAGAAATTGTAAATTTGTTAAAATG TTCGCTCATCAGTCATTGACATTCCTAACTCCCCCCTCTAAAGCGAGTTACTCTGTTTAGAAGAGTAAAATCCATTTTCC TTAAACCATGCACATTTAAGTTTCCTTAATTTGTGCCCTTTAGGCGCACTTAGGTGGACCTAATTATTATATCCACAGGA AAGGGACGATTTTCCTGAAACATGTTGTGTCACCATTTTTAACTTCATAAGAATATTTATTGAAGAAATCTATTGCCAGA TTTAGTTATTGCTTCTTTAGCTTTACTTCTGACTCCTGAAAATAGCTGCTAGAGTGTATACAATGCTGTAAAATGGTAAC TTAGTATGTCTAGTATGAAGGATGAGTGAATGAGGCAGTTGTGTGGAGATCGACCATTCTAATGTAGCATGTCTAGTAAC AAGGATGTCCTGATTTAATGATGTGTTGTCTACTAGATGTGCTATATGTTATTCCTTGTCTATTTATCTTTCTTTTCTTG GCTGAATGTGTGTCATTTTGTGTTCTTCCAGGTTAGTGTTCCGAAATTCGACCTCAGCAATGGATTGGGCTCGAAGAAAC AAGTATTTTATTCTCCTTTCTAAAGGAGTTGAGCGAGATGGGTGGAAATTTGTTCTTCTTGCCCGCTTCTCGCCGGTTCC GTCTTATATCATTAACTATACCTTAGCTGCTACTGAAGTTGGGTTCGTCTTGGATTTTCTTCTTCCCACCATCATTGGAT GTGTCCCTATGATCTTGCAGAATACATCCATTGGAAGCCTTGCAGGTGCTGCTTATGCTACAGCCTCTGGCTCTAAGAAA TCTCAAATTTGGTCTTACGTTTTTCCTATGGTTGGAATTTTATCTAGCATACTTATTTCTTTGAGGATTAAAAAGTATTC AACCCAAGTTTCATTAGACAAAAGTAACACTGTAGATTAGTGACAAAACTTGTCTGGTAGCAAAAAAGAAGGAGTGTCTT CTTAGAAGTGTCATCATTTTTTTCGTGTTAGTGTTAACATTAGATATGCTTTTTGTTCCTCTGAGTTTTCTTATGACTTT GATTTTTCATTCAGACTGGAAGTTGAGAGGGGAAGGAATGTGATATATTTACGCTGTTTATTTAGCATTATAAAATTTTT GAATTCTATTAAAAGCAATTCTACAGGCACAATTCTTGCATTCACCGCGTTATATGGTGTGTTTGGAAACATTAAGTATC AAAGAG
CDS sequence (LotjaGi1g1v0552100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCGGTGGTGGCTGAAGGTTGCGGTGGTGGTGGCGATAGTGGCGGCGTTATGGAGAACCTGGAATTCGAACGGATC ATGGGATAAGGAAGCAGCGCTGAAATGGATGAGTGAATGGTCAGAGAGATTGGGGGTTTGGGCAATTCCTCTCTTCATCT CCCTCCACACTCTCTCCATCGCTCTCTGTTTGCCTTCTGCTATCTTCCTCGAAACCGGCGCTTCCATCCTCTTCGGCTTC TTCCCTTCCGTTCTCTGTGTCTTCTCCGCCAAGATCCTCGCCGCCTCTCTCTCCTTCTGGATCGGCAGGTTAGTGTTCCG AAATTCGACCTCAGCAATGGATTGGGCTCGAAGAAACAAGTATTTTATTCTCCTTTCTAAAGGAGTTGAGCGAGATGGGT GGAAATTTGTTCTTCTTGCCCGCTTCTCGCCGGTTCCGTCTTATATCATTAACTATACCTTAGCTGCTACTGAAGTTGGG TTCGTCTTGGATTTTCTTCTTCCCACCATCATTGGATGTGTCCCTATGATCTTGCAGAATACATCCATTGGAAGCCTTGC AGGTGCTGCTTATGCTACAGCCTCTGGCTCTAAGAAATCTCAAATTTGGTCTTACGTTTTTCCTATGGTTGGAATTTTAT CTAGCATACTTATTTCTTTGAGGATTAAAAAGTATTCAACCCAAGTTTCATTAGACAAAAGTAACACTGTAGATTAG
Protein sequence (LotjaGi1g1v0552100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRWWLKVAVVVAIVAALWRTWNSNGSWDKEAALKWMSEWSERLGVWAIPLFISLHTLSIALCLPSAIFLETGASILFGF FPSVLCVFSAKILAASLSFWIGRLVFRNSTSAMDWARRNKYFILLSKGVERDGWKFVLLARFSPVPSYIINYTLAATEVG FVLDFLLPTIIGCVPMILQNTSIGSLAGAAYATASGSKKSQIWSYVFPMVGILSSILISLRIKKYSTQVSLDKSNTVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 3 | 236 | 234 | 9.0E-124 | – | |
| TMHMM | 4 | 23 | 20 | - | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 46 | 23 | - | – | |
| TMHMM | 44 | 69 | 26 | - | – | |
| Phobius | 47 | 70 | 24 | - | – | |
| Pfam | 64 | 185 | 122 | 7.7E-20 | ||
| Phobius | 71 | 76 | 6 | - | – | |
| Phobius | 77 | 101 | 25 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 102 | 201 | 100 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| TMHMM | 201 | 220 | 20 | - | – | |
| Phobius | 202 | 220 | 19 | - | – | |
| Phobius | 221 | 238 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0552100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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