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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0552400 |
| Transcript ID | LotjaGi1g1v0552400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidylprolyl isomerase; TAIR: AT5G13410.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q9LYR5|FKB19_ARATH Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic; TrEMBL-Plants: tr|G7KXR3|G7KXR3_MEDTR Peptidylprolyl isomerase; Found in the gene: LotjaGi1g1v0552400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108406165..108411056) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCATATTGATAAACGAGGTGGGTGTATAATAAATGTTATCTTGAATATTGGTGCGAAATCTAGCAAGTTCCACAGCA GCTACGGTTATGGCTTCAATTTCATCGTTATCTGTTGCTTCTCTTTCCCTCCCCAAATCTCATTCTCAATCTCAGGAGCA CGACAAATTCTCCGATGCTTCTTTCTCCGGTGCGTTCGGTCTCACTGCTTTTACTTTCCTTTCCTTGTTAATCTATCTAT AGTAACCGCTTTCTTTCAGCCAAAAGCAACGCTAAGAGTACTGGTAGTTGTTGTTGTTGCTCGCCATCGTTGGAACGAAG AAAGATGATTCTCTCTTCCCTCGGCATCGTCGCCGGAACCTTGTGCAGCGCCGGAAGAATCGCTCTCGCGTCTGAATTCG CTGACAGTAATTAATTCTCTCCCAAAACTTGCTTCTCACTTTTCTAGTTTTCTACTTACCTTTGCTGAATTTGTAGTCAC AACTGAATTTGCATTTGTAGACTAGAGATAGATTCTTGTGTCAAGTGTGAATTATCATAAAATTGTAATTTGAAGAAAAC CAGTGTGTGTAGTTGTAATTGGAAGTAGGAGATTGCTTCAGCATGTTCTGCATGCTATGTGGAAAGAAGTAACTCTATTG TTTTTGCCTTTAGTGATAATAGGCTTGAATTTCCATCTTATGTTTATCATAAATATGATGCTGTTGAGCCACACAAATCA GAGAGAAATTTGTTCTGTGAAGTGTAAGCTATGGTGAATATAAGAATGTAATCTGAAGAAGGCCACTGTGTGCGTATTTA TAATTGGAGGAGGAAAATGATTGAACATGTTATGCATGCTGTGACGAAGGAAGTGCCGAAGTGATGTATTTGTTTGTGTC TTATGTGGTGATGATGCATATAGGCTTGAATTTGATTCTAATTTTTGGCAAAAATATGATGCTGTTGAGCTACATTGGAT TGAAGAAAGTATAAAAATGAGAAAGAAACATACTTGCAATATGACGTGTAATTTGAACATGCAGTGCCAGCGCTTAGAGG GAAGGACTACGGTAAATCAAAAATGCGATACCCGGACTACGTAGAAACTGAATCAGGACTCCAATATAAGGTGAGATATT GCACGTTGCAAATACTTTATGGTTAGGCATGCTGCTTCTTTTTTATTTTATACAGTTCATAACATATATTGAGAACGCAG GACTTACGACCAGGGGATGGCCCAAAACCGAAGATTGGAGACACAGTAGTGGTAAGGCACTGATCATTTCTTTTATTGTT TTTAAAATCAATTTGTTAGAAGTCAGGTTTAGCCAGTTACATTTGGATATAGTGGCTCTTAATTAAAATGAAAACATTGT CTTTATCAATTTTTCTCCTGCGCTGTAGAGTGTAACTAAACTAGCAAACTTTTATTGGCTCTCTGGAATGATTTTGGGTG GGTATCTTTTGCACGGAATTGACAACTTTAGTGAAGAAAATTAGAGTAACCTGTATTTCTCCAAATGAACCCTTTCTAGA TACTATTGTTCTCTCTTCAAATTAGATAACTGAAGCAACTTATGGGCTTCAAATTCCATTCAGGTAGACTGGGATGGCTA CACCATAGGTTATTACGGCCGTATATTTGAAGCCCGAAATAAAACAAAAGGTGGTTCCTTTGAGGTATGAAATGCTTTGC ATCATTTAACCAGACACTGAAGGAGTGAATGATTATAACACACCTATTGTGTTTTTTTTCTGACATGCAGGGTGATGACA AGGCCTTCTTCAAATTCAAAATAGGATCACAAGAGGTGAGAGACTTCTTCATTGACAACTTGAAAGGATTTTGTGATAGG TTGTGAGCTCTATTTCACTGATAATGCTCACATTATCTGCTGCTATGCGTGAAACAAGTGATGTAGGATGCGAATCATAA GATAGGATAACAAAAGCATAAGTCAAAATCAAAAGATTCAAAACCAACTGGTTCTACTAGGTCATAATTATTTTGCTCTG AGGACTGATTTCTTATGTGCTTTGAATGTTTAGGTAATACCCGCTTTCGAGGAGGCTGTTTCAGGCATGGCTCTTGGGGG CATTAGAAGGTGCTGCATCAATATTTCTAGAAATACTTTGACACATACTATGTGGCTGAGTTGTGTTGTGTTCAAGTTTT TTCCTGCCAATCCAATGGCCTGAACTTTTGTGTTTTGTGAAGAATGGTATTATGAATAACATTAAGTACCATGGATATCA CGCCAACAGTTGGTGATGGCATTCCATGAGGCAAAATACTTTTTTTTTGTTGAACTGCAGCTTCTATCAATTCTAACTCA GGATTTTGGGAGACCTAACAACATCCTTACTTTATTTTGCTGACTGAGAACTTCTTTCAATTCTAACTATGGATTCAGGG CACTTCACAACATCCTGAATTTCCTAGGTTGAAATTGTGAGTCACTGGAATATTTGGTTCAGAATACAACAACAACCAAA GCCTTTTACTCACGAGGCGGGATCAGCTATATGGATCAAATGATACCATAATATCCTATATATTTAGTTCAGAATCTTTT GCTTACATTTTTTAATCCATTAAAAACTGAATATGCTTTAAAACCTACGCACATGTGCAATGGATTCATATACTGCCTAG AGAGATGTTTAAGGAGAGAAATGCAAATTTCACTATGTTCGTCAGTGATGCAGGGTAATTGTGCCCCCTGAACTTGGATA TCCTGAGAATGATTACAATAAGGGTGGCCCAAGACCAACAACATTTTCGGTAAGAGTTGAGTCTTCTTTTACCAACTATC TGAATTGTTTCTGAGGAAGATGCAATGAAAATATGTGTTGCAGGGCCAACGAGCCTTGGATTTTGTGCTAAGGAACCAAG GATTGATAGACAAGACTCTATTGTTTGATATCGAGCTGTTGAAGATTATTCCAAACTGATTTGTCAAATTCTGCATTGAT CCTGGAATATTTGTATATTACAATCAGAACATTGAGGTTAGTTTCTCTGACATCACTTATAGTATTATCAGCATTCGTAT ATGTTGTGCAAGAAAATAAGCTACTTTGAGCTTATTTCAATAATCTTCTCGAATTAAGTTATAAATAAGTTTAATTAAGC TATTTAGTCAAACACACCCTAATTCTTTGTCAGTGCCATGCTGCAATTTTCTAGAATAAGTTTATTGGCCTAACAGTGCA CCTTGTGAGTACTTTCTGATGAGTTTTGTCCTTGGTGATTGTTAGAGTATAATATAAAACCATTAAAGTGGCCCTTACCG AACAGCTTAAGCTTTTGGGATAAGTGGTTGCTTGACAATGATTAAGATTATCGTCTGTGTTTTGCAATCCGTTTGTTGTA TTAAATACATGAAATATAATAATATAACAAGCAAGAGCTACAGTGAATTTTGGAATGCCTTCTCATTATATTCAATAACT TGCTTTTGGTTGTAGGTCTACCACTCTACCTACTTACAGTGGATATGAGGATGCATGCTTCATCATGCAAAGGGTTGTCC TGTCCTGTAGTCTTTTTATTAACATTGACATTTGATGCTTGCCTTTAAAAGCTGAAATATCTGTGGCAATTTGACCTGGT AATAGATGCTACATGTTGTATTTGCATGTATATTGTGGTCTTGTCCCTTGTTGGTTTCCCCGGTAATAGAGCATATGTAT AGTGCAACGTTCAAAACAAGTCTCCTCAACTATTGCAAACTTTGATTGACTATATGTACATGGGAAGTGACATCCAAAGG TTCCATTCAATTCTTGGATTTGGGATGCATTGATGCTGAAGTCTTTTTTATGTATGTCCTATTTTTTTTTTTGGTCAATT GTATGTCCTATTTAGTTATGCATTGTCATCCTCATCCCTATCTGATGGGCTATGAAGTTTGTTATAATAGCAGCCCAAAA TCTCAAAGAGAGTTATATATGCACTGTTTAAACAAAAGAAGAGATCTTTGGACCCAAAAAACAAAGGACAGATCTTTCAG AAAATTCAGAAATTTATTCTTGCATACATAATAAGCCTTATATGCAGGCAGCAAACAGAGCTAACTAATGCTTTGAATGA CTGGCATAGATTTTTAAGATCCAATAAACACTGCTCAAGTGACATGTTTCTGTCTGAAAGAGCTTATTTAATGGCAATTT TTGAAAGGATTATTATAATATATCGCTGTCTTTAATAATTAGATCAGCAGAATTAAGTTTGGGTTTGCTTAATCTTCATA TGCATTATCTCATCAAATTAAGGGCTTAATTACCTAGTAATTAATTCATCATTTTGATTAATTATCTCCTGCTGTTCCTT GCAGTACTCCTAGCATCTCGTTGACAGTTGAAGTATGTTGCAGCGACAGGTGATCCAAGATTGTAAACCTCGGCAAAGTC TCTAGTGTGAAAATTTTGGCGCCACCCAGGTGCATGTAGTGTTTGTCTACCCCCCAACTGACGAAACAGCACAAAAACTA TACGATGAATCCCTGCTGTTGGTCGTGGACTTTCATAAGATACAATCTCTTCTCCTACCAAATCAAATACATTAAAAAAA AGTCGATAATATTAACTAGCAAGAAATTAAATTTAATGAAGTGAACATTTGTCATGTAATGATCAAATCAGATAAATAAA AGCTGTGTACGTACCAAAGTTTGCTCCTGTAGTTGCTGGAATATTGGTTACTAACCTAGGCATTTGGAAAATGAAAATCT AGTGAATAATATTAACACAAAAGTTAAATCTAATGAAGTTAAATAAAAATTTGACTTTGCTCTAGTCATAGTGAGTATGA CATTAAAATTAATGCCCTTACACTATTAACTATAGCATGGAAAGTGATCTTATGCATAGTTTCAACAATGGTAATTCTAC ACAAAAGAGTAG
CDS sequence (LotjaGi1g1v0552400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAATTTCATCGTTATCTGTTGCTTCTCTTTCCCTCCCCAAATCTCATTCTCAATCTCAGGAGCACGACAAATT CTCCGATGCTTCTTTCTCCGCCAAAAGCAACGCTAAGAGTACTGGTAGTTGTTGTTGTTGCTCGCCATCGTTGGAACGAA GAAAGATGATTCTCTCTTCCCTCGGCATCGTCGCCGGAACCTTGTGCAGCGCCGGAAGAATCGCTCTCGCGTCTGAATTC GCTGACATGCCAGCGCTTAGAGGGAAGGACTACGGTAAATCAAAAATGCGATACCCGGACTACGTAGAAACTGAATCAGG ACTCCAATATAAGGACTTACGACCAGGGGATGGCCCAAAACCGAAGATTGGAGACACAGTAGTGGTAGACTGGGATGGCT ACACCATAGGTTATTACGGCCGTATATTTGAAGCCCGAAATAAAACAAAAGGTGGTTCCTTTGAGGGTGATGACAAGGCC TTCTTCAAATTCAAAATAGGATCACAAGAGGTAATACCCGCTTTCGAGGAGGCTGTTTCAGGCATGGCTCTTGGGGGCAT TAGAAGGGTAATTGTGCCCCCTGAACTTGGATATCCTGAGAATGATTACAATAAGGGTGGCCCAAGACCAACAACATTTT CGGGCCAACGAGCCTTGGATTTTGTGCTAAGGAACCAAGGATTGATAGACAAGACTCTATTGTTTGATATCGAGCTGTTG AAGATTATTCCAAACTGA
Protein sequence (LotjaGi1g1v0552400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASISSLSVASLSLPKSHSQSQEHDKFSDASFSAKSNAKSTGSCCCCSPSLERRKMILSSLGIVAGTLCSAGRIALASEF ADMPALRGKDYGKSKMRYPDYVETESGLQYKDLRPGDGPKPKIGDTVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKA FFKFKIGSQEVIPAFEEAVSGMALGGIRRVIVPPELGYPENDYNKGGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELL KIIPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 245 | 245 | 2.7E-123 | – | |
| PANTHER | 1 | 245 | 245 | 2.7E-123 | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 245 | 226 | - | – | |
| SUPERFAMILY | 78 | 243 | 166 | 1.81E-29 | – | |
| Gene3D | 81 | 245 | 165 | 4.1E-30 | – | |
| Pfam | 119 | 240 | 122 | 2.3E-21 | ||
| ProSiteProfiles | 124 | 243 | 120 | 15.934 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi1g1v0552400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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