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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0554400 |
| Transcript ID | LotjaGi1g1v0554400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter; TAIR: AT2G43330.1 inositol transporter 1; Swiss-Prot: sp|Q8VZR6|INT1_ARATH Inositol transporter 1; TrEMBL-Plants: tr|A2Q2S7|A2Q2S7_MEDTR General substrate transporter; Found in the gene: LotjaGi1g1v0554400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108669741..108671832) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAATTTGCAGGAAACAATTGTCAGCATGGCAATTGCTGGAGCAATTGTTGGTGCAGCAGTTGGCGGTTGGTTTAATG ATTATTATGGACGAAAGAAGGCCACACTATTTGCTGATGTCATCTTTGCTCTTGGAGCAATCGTCATGGCCGCCGCGCCG AATCCTTATATTCTCATTGTGGGACGTCTTCTCGTTGGTTTAGGTGTCGGCGTAGCTTCGGTCACTGCTCCTGTGTATAT TGCAGAGGCATCACCATCTGAAATTAGGGGATCATTAGTAAGCACAAATGTGCTCATGATAACTGGTGGACAGTTTCTTT CCTATCTTGTAAACCTTGCTTTTACCCGGGTTAGTATTCCATGCTCTTCTATTGAATTGGAATTTTATATGTATATTTTC ATCTCCATTTGTTGTCCCAAAAGTTGTGCAAATGTCCTTACACTATCCACATGTTTGTTTTTGGGTATTATTTCACTGAA CACCTTTTACATTCTTATTTGAGCAGGTTCCCGGGACATGGCGATGGATGCTTGGTGTTTCAGGTGTTCCAGCTGTTATT CAGTTTGTTTTAATGCTCTTCCTACCCGAATCCCCAAGATGGCTATTTATAAAGGTACAGAATTGCCTTATCACTCTTCT TGACAATTATGTCCTTGTTGCCATCTTAATATTTGATCGTCTGTACAGAATAGGAAAAACGAAGCAGTCGATGTGATTTC TAAGATCTTTGACTTATCTCGTTTAGAGGATGAAATTGATTTCTTAACTGCTCAATCAGAGAAAGAGCGCCAAAGAAGGA GTACTATCAAATTCTGGCATGTTTTCAGATCAAAAGAAATCAGAATGTCATTCCTTGTTGGAGGCGGACTTCTGGTAAAT GTTTACTATGAAACTGTTTTTGCACAACATTGCTTTGTCATAATGAAAGGACCTTTGTAAATGCTCTTTGCGTCAAATAG TTAACTAGAATGGTTCCTCTTGACTAAATAATAAATATATTTACGAGTCATTGTGAGTTGAAGTGCCACTTATGGGAAAC CATAGGCTGGTTCCAGATTTTCAGGACTGCTCTAAAATAGAAGTATATTATACATGATTCCACATGCAACAAGCTCTGTG AAACTTATTTAGCTATCGGTCTTTGTTATAAAATTGAAGATTTAGCACTGAATTTGTAATTTTGGCAATAAAATTTAGAA CCATAATGTTTGGAAATTTCATTTTAAGAGCTAAGATTGTATCATACAGAAAGTTTAGCATATATGAAAAATATTCTATG TTGAAGAAGCTATTTTCATGTGATGCTTAATGTAAGTAAATGTTATGCAGGTACATTCATTGATCTCTAATGTGCTGAAA GTTTTCACTACTTTTCGCTTAATTTCACTTTGGCGTGTCTTAAATCACTTATGGATTACTGCATTCTAATAGCATCCGGT GTTTGTGCAGTTTTTTCAGCAGTTCACAGGGATAAACACAGTCATGTATTACAGCCCAACAATTGTCCAAATGGCTGGCT TCGAGTCTAATCAGTTGGCTCTTCTCCTGTCCCTCATAGTTGCGGGTATGAATGCTGTCGGAACAATTCTTGGCATTTAC CTTATCGACCTCGCAGGGCGGAAAATATTGGCCCTTTCTAGCTTGGGAGGAGTAATTGCATCCTTGATCCTCTTGTCTGT GGCATTTTATAATCAATCATCAAGTGAAGTGTATGGTTGGATTGCAGTTTTAGGCCTAGCCCTATATATTTTGTTTTTTT CACCAGGAATGGGACCTGTGCCATGGACTGTGAACTCAGAGATATATCCAGAAGAATATAGAGGTGTCTGTGGGGGCATG GCAGCAGTAGTGTGTTGGATTTCAAACTTGATTGTGTCAGAGAGCTTCCTTTCAATTGCTGAGGGTATAGGCATTGGTTC TAGTTTCTTGATTCTTGCTGGTATAGCTGTGGTTGCATTTTTCTTTGTGCTTCTGTATGTTCCCGAGACCAAAGGATTGA CATTTGATGAAGTGGATGTAATATGGAGGGAGAGAGCTTGGGGCAAGAACCCAAACACACAGAACCTTCTTGAGCAGGGA AGCCATTCCTAA
CDS sequence (LotjaGi1g1v0554400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTGCTGGAGCAATTGTTGGTGCAGCAGTTGGCGGTTGGTTTAATGATTATTATGGACGAAAGAAGGCCACACT ATTTGCTGATGTCATCTTTGCTCTTGGAGCAATCGTCATGGCCGCCGCGCCGAATCCTTATATTCTCATTGTGGGACGTC TTCTCGTTGGTTTAGGTGTCGGCGTAGCTTCGGTCACTGCTCCTGTGTATATTGCAGAGGCATCACCATCTGAAATTAGG GGATCATTAGTAAGCACAAATGTGCTCATGATAACTGGTGGACAGTTTCTTTCCTATCTTGTAAACCTTGCTTTTACCCG GGTTCCCGGGACATGGCGATGGATGCTTGGTGTTTCAGGTGTTCCAGCTGTTATTCAGTTTGTTTTAATGCTCTTCCTAC CCGAATCCCCAAGATGGCTATTTATAAAGAATAGGAAAAACGAAGCAGTCGATGTGATTTCTAAGATCTTTGACTTATCT CGTTTAGAGGATGAAATTGATTTCTTAACTGCTCAATCAGAGAAAGAGCGCCAAAGAAGGAGTACTATCAAATTCTGGCA TGTTTTCAGATCAAAAGAAATCAGAATGTCATTCCTTGTTGGAGGCGGACTTCTGTTTTTTCAGCAGTTCACAGGGATAA ACACAGTCATGTATTACAGCCCAACAATTGTCCAAATGGCTGGCTTCGAGTCTAATCAGTTGGCTCTTCTCCTGTCCCTC ATAGTTGCGGGTATGAATGCTGTCGGAACAATTCTTGGCATTTACCTTATCGACCTCGCAGGGCGGAAAATATTGGCCCT TTCTAGCTTGGGAGGAGTAATTGCATCCTTGATCCTCTTGTCTGTGGCATTTTATAATCAATCATCAAGTGAAGTGTATG GTTGGATTGCAGTTTTAGGCCTAGCCCTATATATTTTGTTTTTTTCACCAGGAATGGGACCTGTGCCATGGACTGTGAAC TCAGAGATATATCCAGAAGAATATAGAGGTGTCTGTGGGGGCATGGCAGCAGTAGTGTGTTGGATTTCAAACTTGATTGT GTCAGAGAGCTTCCTTTCAATTGCTGAGGGTATAGGCATTGGTTCTAGTTTCTTGATTCTTGCTGGTATAGCTGTGGTTG CATTTTTCTTTGTGCTTCTGTATGTTCCCGAGACCAAAGGATTGACATTTGATGAAGTGGATGTAATATGGAGGGAGAGA GCTTGGGGCAAGAACCCAAACACACAGAACCTTCTTGAGCAGGGAAGCCATTCCTAA
Protein sequence (LotjaGi1g1v0554400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIAGAIVGAAVGGWFNDYYGRKKATLFADVIFALGAIVMAAAPNPYILIVGRLLVGLGVGVASVTAPVYIAEASPSEIR GSLVSTNVLMITGGQFLSYLVNLAFTRVPGTWRWMLGVSGVPAVIQFVLMLFLPESPRWLFIKNRKNEAVDVISKIFDLS RLEDEIDFLTAQSEKERQRRSTIKFWHVFRSKEIRMSFLVGGGLLFFQQFTGINTVMYYSPTIVQMAGFESNQLALLLSL IVAGMNAVGTILGIYLIDLAGRKILALSSLGGVIASLILLSVAFYNQSSSEVYGWIAVLGLALYILFFSPGMGPVPWTVN SEIYPEEYRGVCGGMAAVVCWISNLIVSESFLSIAEGIGIGSSFLILAGIAVVAFFFVLLYVPETKGLTFDEVDVIWRER AWGKNPNTQNLLEQGSHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Gene3D | 1 | 401 | 401 | 2.0E-118 | – | |
| PANTHER | 1 | 417 | 417 | 1.4E-218 | – | |
| TIGRFAM | 1 | 393 | 393 | 1.2E-104 | ||
| PANTHER | 1 | 417 | 417 | 1.4E-218 | – | |
| ProSiteProfiles | 1 | 386 | 386 | 50.383 | ||
| Pfam | 2 | 397 | 396 | 3.0E-110 | ||
| SUPERFAMILY | 3 | 394 | 392 | 9.68E-66 | ||
| CDD | 15 | 384 | 370 | 5.51806E-147 | – | |
| Phobius | 25 | 44 | 20 | - | – | |
| TMHMM | 25 | 44 | 20 | - | – | |
| Phobius | 45 | 49 | 5 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| PRINTS | 50 | 69 | 20 | 1.2E-21 | ||
| Phobius | 50 | 71 | 22 | - | – | |
| ProSitePatterns | 55 | 80 | 26 | - | ||
| Phobius | 72 | 82 | 11 | - | – | |
| Phobius | 83 | 105 | 23 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| Phobius | 106 | 110 | 5 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 111 | 133 | 23 | - | – | |
| Phobius | 134 | 197 | 64 | - | – | |
| Coils | 159 | 179 | 21 | - | – | |
| TMHMM | 198 | 220 | 23 | - | – | |
| Phobius | 198 | 219 | 22 | - | – | |
| PRINTS | 208 | 218 | 11 | 1.2E-21 | ||
| Phobius | 220 | 233 | 14 | - | – | |
| Phobius | 234 | 257 | 24 | - | – | |
| TMHMM | 235 | 257 | 23 | - | – | |
| ProSitePatterns | 253 | 269 | 17 | - | ||
| Phobius | 258 | 263 | 6 | - | – | |
| TMHMM | 264 | 285 | 22 | - | – | |
| Phobius | 264 | 286 | 23 | - | – | |
| Phobius | 287 | 291 | 5 | - | – | |
| Phobius | 292 | 309 | 18 | - | – | |
| TMHMM | 295 | 317 | 23 | - | – | |
| PRINTS | 298 | 319 | 22 | 1.2E-21 | ||
| Phobius | 310 | 329 | 20 | - | – | |
| PRINTS | 321 | 333 | 13 | 1.2E-21 | ||
| TMHMM | 330 | 348 | 19 | - | – | |
| Phobius | 330 | 352 | 23 | - | – | |
| Phobius | 353 | 357 | 5 | - | – | |
| Phobius | 358 | 382 | 25 | - | – | |
| TMHMM | 358 | 380 | 23 | - | – | |
| Phobius | 383 | 418 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0554400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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