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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0556700 |
| Transcript ID | LotjaGi1g1v0556700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase sigma factor; TAIR: AT1G08540.1 RNApolymerase sigma subunit 2; Swiss-Prot: sp|O22056|SIGB_ARATH RNA polymerase sigma factor sigB; TrEMBL-Plants: tr|K7KHD7|K7KHD7_SOYBN RNA polymerase sigma factor; Found in the gene: LotjaGi1g1v0556700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108876942..108881659) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAACCTTAAATTTGATATTGAATATTGTATTTGAAAAGGGCAATTAGTCTCTCATACTATTGAAGGTGCAAATGATT TGAGATATTGGTGACCAACAATTCAAAGAGACGAGGGAGGGGTAAAGGTAAAAGTAAGAAAATGGGGTGAGATATTGTAC TAAATCCTTTCAACCTCACCTCACCCTCTTATCCGAATGAGCTGTTGTGTCACTCAGAGGCACCAATTCTCTTCCCTTCC ATAGTTCCATTCCCTTCCCAACCCACCTCACCCTCTTTCTTGCCTCGCCTATGAATCTCGTTGATAACATTACCTTAAAC AAAACCAAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGATGTTCTACTTCGTCTTACGTTGTTAGTTTCA TCGCTCCGATCGGAGTGACAGACAAGAATGTCGTGTTTATTGCCACACTTCAAGTGCCATCCTCATCCCTCTCCTCCTAC GCATCATCATAACCATCACCATCTATTCATAAGTACTGTTAATTAAATCTCTCTCTCACGATTCCCATTTCCAAATGGAT ATGCTGTGAATTCATTCTATTCTATTTCTCCCTGACTTGTTATTTTTGTGTTGCAGCGAAAACAAGACCAAATTTGTGTT TCCAGCCTCAATGTGTTTTGTTAGCCACAACTTCAGTATCAAAATCATCAGCGGCACTCCTTAATCTGCCAACCGAGTTG GAATTAGATGCTCCAAACACGCCTTGGCCCTATCCCTCCACGCAGGTTACATGTTTGTCAATAATCAATCTAATCTTCCC CTTCCAATAATTCCACTTGGATATTCATAGTGTTCAAATGCAGGCCAGGTTATGATTAAGTACTCAACTTGTCTTGTTTA GGGTTGCATTTGGTATAGAGTTTACCAACATTCCTTTAGGCCCCGTTTGGGAAAACAGCTTAATTAAGCGCTTATTTATT CATAATCTATTTTTAAAAATTTATTGAAATAAATTGAAAATAAGCTATATATAAGCATAAGCTCTTTTTCATAAGCTATC CTGAGTAGCTTATGAAAATAAGCTCAAAACAGCTTATGGCCTACCATAAGTTGTTTGCATAAGCTCTCCCAAAAACTTAC ACAAGCGTTTATGCTATCAAATAAGCTCAAATAAGCTCTTCCAAACGGGGACTCTAGTAATTGAAATTTCACTTAAGATT GAACCACCTCACCCTTCATAAAAACAGGTCATGGGTTCATTCGTTCTGGTAGGCCTTCATTGGTAGCTCATCCGTGAGTG CTATTGTGAGCTCTTATTGCAGCTTGTGCCCTGCTCTGATATTGCAATACCCCCAAAACTTTCTTATACCAAAAGAATTA TTTAAAGTTAACTTTTTTTTTTCATGATATTTATGTACTGTAATCCCTCTTAAATAGTCATATTGTTTTCACTGTCAACC GAGTCACGAGTAAGAACTGTTTTAGACTTGTATTTGGCGGTTTTGAACTATTTTCTTAAGTTTATTCAAATGCAAATTTC AAGGGTGAATCGGCATTTTACTTTTGGATAATTTCTATAGCTGTTCAGCCATGCAGAGAGAGTTGATATATCAACCTTAC CCGTAAACTAATTTTATTTATTCCTTTCATCAGGCAAACTTTAAAGCAACGTCGTCTGCAGAATCACTGATCAGCAGTGA AGATGCTGTAATAGCTGCTGCTGCTTCTGAAGCTCTTGCTCTTGCTAAAGCGGCTGCGAAGGTTGCAAAGGATGCGGCTC TACTAGTAAAAAAGAGGCCCCCAGCCGAAGCAGGGTATAGACCACAAGTTCCTTCCAAATCTGATAATTTACTTCTCAAT TGGATTCAACATATGGAAGCAGAAGATGTTGTAGCAGGAGGATCCATGGGTGCTGGAGCAGAAGTAATGGAAGCTGTTGA CATAAGCCCCAGTGAAGAGGAGTTTGATGATGCGGAGCCTACCCTTGAGGAACTTGAGCGTGAGCAGGAAGAGCTTTCCA ATAGTATAACTGCAAGATCTAGCCGCCAAACAGAAAGAAAAGCTAAAAGAGTCAGAGCGACTGAGAAAGCTACAACAAAT ATTGTGTCTTTCAAGTCTGGCTCCACCAGCAGGAAAAAGCGTGTTCCCGTGCAAGAAGTAGACTATTCTGATCCACTTCG TTACTTAAGAACAACAACTAGAGCTACTAGGCTTCTGACCCCAACTGAAGAAATTGAGTTGTCTGAAGGAATACAGGTGG GGTTTGCATGTTAGTGATGTTGCATTAGTAGCAATCTTGTAGAGAATCAAACATGCTCTTCATGCCCTTCATAGTCCATA TCCTCCTAAATTACCTTATGCTAATAATCTATATTAAATCTTCATAGAGTGCATGCTAAGCTTATGATTATGTGAATCAG TATTCACAACAATAACAACAGCAAACAAGCCTTTTGCATTAAACAGTTACATGGATTATACAATACCATAATTCTCTGTT TTGTACTAAGTTCAAGGACAGAATGTGTATTTCTTAATCTCTCAGGTTGATTTGGCTCATAGTTTCCTTGGTCTGTCTCA ACCTCTGAGTATTTAAAGGTTAACCCTTCTTACCATCTAAAGTAACTCCCTCACTTCAGAGGAGCTAAATCCTTATTTAT TGGTTAGGGTGATCTTCAAGATACTTGCTACTGGCTAGTTGGGTGCTTCTGTAGTTGTGAACTATCCAGGAAGGGAACGG ATGTTACAAGGAACATAGTGTTCATTTAATTATTGTGAATCAGCTCATGCAGATTGTATTTATCATAAACTATTTATATT TTAGGAGATTGTAATACTTAAAGTTATAAATATTTGTAGTTTTTTTTTTCTGATTATGGTTTGGGTTTTAGTAAACTAAA TTATATTTTACTTAAAACTTTAGTATTTTGCTAGTGTTATCTAACTCATTTCACTCTTTTCATGTCAATATAATCCAGGA CCTAATAAAGCTTGAAAAACTCCAGGAGGATCTTGCAGAAAAGTGTGGTGATCAGCCCACATTTGCCCAATGGGCTGCAG TTGCAGGGGTAGATCAAAAGACCCTGAGAAAACGTTTAAATTATGGCATATTTTGTAAAGAAAAGATGATTAAAAGCAAT ATACGACTCGTCATATCAATTGCTAAGAATTATCAGGGAGCTGGGATGAATCTGCAAGATCTTGTCCAGGTATATTATCA CCTCTATAGTTTTTTGCTTAAATAAAATGCAGATTAATTCATATATAAGGATTGATATTCCCTCCCTTTTCCCTTTTCCC TTTCAATAATTATGGAAAACATGGTGACTTTTATGTTACCGGTAATTAACTATTTAACCCCTTTTCATTGGTTTACAGGA AGGATGCCGAGGTCTTGTAAGAGGTGCAGAGAAGTTTGATGCTTCCAAGGGTTTTAAGTTTTCGACCTATGCTCATTGGT GGATTAAACAGGCAGTTCGGAAATCACTCTCTGATCAGTCAAGAACTATTCGCCTGCCAGTGAGTATTTATCTTTGATTA GTTTCTTTATGACCATGCATCAAAGTATGTCCTTTAAAAACTGCAAAAACCAAATAGCTAATCTTGGTTATATGAGTTAA AATTGCTGTAATGTTTATAATCGACTAAATTGCAATATTTTTTTTGTTTGGCAGTTTCACATGGTGGAGGCGACTTACAG AGTGAAGGAGGCAAGAAAACAATTGTATAGTGAAAATGGAAGACACCCTGATGATGAAGAAGTTGCCGAAGCAACTGGGC TGTCAATGAAGAGGCTTAGTGCTGTACTTTTGACCCCAAAAGCTCCCAGATCTCTGGAACAGAAGATTGGGATCAACCAG AATCTTAAACCTTCGGTCTGTCCTAAACTAGTTCAAATTTATGCTTCAGAAAGAAAAACTTTTTCCCCTCATGTGAAGTT CAATTGGCTGATTATCATGTTTTTACCAGGAAGTAATTGCTGATCCTGAGGCTGAAACAGCTGAAGAACAGCTCATTAAG CAATTCATGAAGAAGGACTTGGAAAAGGTACTGGACAGTCTAAATCCAAGAGAGAAGCAGGTCATTAGATGGAGATTTGG TATGGATGATGGAAGGATGAAGACCCTGCAAGAGATAGGAGAAATGTTAGGTGTGAGTAGGGAGAGAATTAGGCAAATTG AGTCTTGTGCTTTTAGGAAACTAAAGAACAAGAAGAGAAACAAGCATTTGCAGCAGTATTTGGTTTCACAATCCTAGCAA ATATTGATATTGAAACGCTGGGGTGAGTTAGCTTATTTAATGCCTGTGAGGTCCTGATCCCTTTGTTCTTCTCTTCGTCT GAATATTCTTCCTCCATTTTTTCTTCATCCTCCTATAGAGAAAACAAAATGTCGTGCTTAGTATACTAGGAAATGGATAT ATACACAAAGGAGCAGCTTTTGACTATGAGTTCACCATTCTTTAATGTACGTGATTGAGTCGAACCAAATAAGAGTTAGT TTAGAATATGGCAAAAATATTTCAGGGAAGTACTCTACCTAGCACTTCTTTTCATGAAGATAACCAAGCTCAGATGATGA ACCTAACCAAGTGGCCTCAGTATCGTCATAATGTCCGCTTAATACTTTAAATTCAACAATGGCAGTGTATGAGCTTCTTA AACAGCAGTTAGCTGCGTATGTAAAACTTATCATATTTGGTTCAGTTTTTAGGAGAGGAGAAAGTCGAAACCCCTCAT
CDS sequence (LotjaGi1g1v0556700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTGTTTATTGCCACACTTCAAGTGCCATCCTCATCCCTCTCCTCCTACGCATCATCATAACCATCACCATCTATT CATAACGAAAACAAGACCAAATTTGTGTTTCCAGCCTCAATGTGTTTTGTTAGCCACAACTTCAGTATCAAAATCATCAG CGGCACTCCTTAATCTGCCAACCGAGTTGGAATTAGATGCTCCAAACACGCCTTGGCCCTATCCCTCCACGCAGGCAAAC TTTAAAGCAACGTCGTCTGCAGAATCACTGATCAGCAGTGAAGATGCTGTAATAGCTGCTGCTGCTTCTGAAGCTCTTGC TCTTGCTAAAGCGGCTGCGAAGGTTGCAAAGGATGCGGCTCTACTAGTAAAAAAGAGGCCCCCAGCCGAAGCAGGGTATA GACCACAAGTTCCTTCCAAATCTGATAATTTACTTCTCAATTGGATTCAACATATGGAAGCAGAAGATGTTGTAGCAGGA GGATCCATGGGTGCTGGAGCAGAAGTAATGGAAGCTGTTGACATAAGCCCCAGTGAAGAGGAGTTTGATGATGCGGAGCC TACCCTTGAGGAACTTGAGCGTGAGCAGGAAGAGCTTTCCAATAGTATAACTGCAAGATCTAGCCGCCAAACAGAAAGAA AAGCTAAAAGAGTCAGAGCGACTGAGAAAGCTACAACAAATATTGTGTCTTTCAAGTCTGGCTCCACCAGCAGGAAAAAG CGTGTTCCCGTGCAAGAAGTAGACTATTCTGATCCACTTCGTTACTTAAGAACAACAACTAGAGCTACTAGGCTTCTGAC CCCAACTGAAGAAATTGAGTTGTCTGAAGGAATACAGGACCTAATAAAGCTTGAAAAACTCCAGGAGGATCTTGCAGAAA AGTGTGGTGATCAGCCCACATTTGCCCAATGGGCTGCAGTTGCAGGGGTAGATCAAAAGACCCTGAGAAAACGTTTAAAT TATGGCATATTTTGTAAAGAAAAGATGATTAAAAGCAATATACGACTCGTCATATCAATTGCTAAGAATTATCAGGGAGC TGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGCCGAGGTCTTGTAAGAGGTGCAGAGAAGTTTGATGCTTCCAAGG GTTTTAAGTTTTCGACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTCTCTGATCAGTCAAGAACTATT CGCCTGCCATTTCACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCAAGAAAACAATTGTATAGTGAAAATGGAAGACA CCCTGATGATGAAGAAGTTGCCGAAGCAACTGGGCTGTCAATGAAGAGGCTTAGTGCTGTACTTTTGACCCCAAAAGCTC CCAGATCTCTGGAACAGAAGATTGGGATCAACCAGAATCTTAAACCTTCGGAAGTAATTGCTGATCCTGAGGCTGAAACA GCTGAAGAACAGCTCATTAAGCAATTCATGAAGAAGGACTTGGAAAAGGTACTGGACAGTCTAAATCCAAGAGAGAAGCA GGTCATTAGATGGAGATTTGGTATGGATGATGGAAGGATGAAGACCCTGCAAGAGATAGGAGAAATGTTAGGTGTGAGTA GGGAGAGAATTAGGCAAATTGAGTCTTGTGCTTTTAGGAAACTAAAGAACAAGAAGAGAAACAAGCATTTGCAGCAGTAT TTGGTTTCACAATCCTAG
Protein sequence (LotjaGi1g1v0556700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSCLLPHFKCHPHPSPPTHHHNHHHLFITKTRPNLCFQPQCVLLATTSVSKSSAALLNLPTELELDAPNTPWPYPSTQAN FKATSSAESLISSEDAVIAAAASEALALAKAAAKVAKDAALLVKKRPPAEAGYRPQVPSKSDNLLLNWIQHMEAEDVVAG GSMGAGAEVMEAVDISPSEEEFDDAEPTLEELEREQEELSNSITARSSRQTERKAKRVRATEKATTNIVSFKSGSTSRKK RVPVQEVDYSDPLRYLRTTTRATRLLTPTEEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLN YGIFCKEKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI RLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKNKKRNKHLQQY LVSQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 565 | 565 | 1.4E-180 | ||
| PANTHER | 66 | 561 | 496 | 3.3E-248 | – | |
| PANTHER | 66 | 561 | 496 | 3.3E-248 | – | |
| Gene3D | 149 | 401 | 253 | 1.7E-38 | – | |
| Coils | 182 | 209 | 28 | - | – | |
| MobiDBLite | 196 | 220 | 25 | - | – | |
| SUPERFAMILY | 250 | 399 | 150 | 1.08E-44 | ||
| Pfam | 251 | 280 | 30 | 7.8E-5 | ||
| TIGRFAM | 327 | 551 | 225 | 2.7E-33 | ||
| Pfam | 329 | 399 | 71 | 3.5E-18 | ||
| PRINTS | 353 | 366 | 14 | 3.3E-23 | ||
| PRINTS | 377 | 385 | 9 | 3.3E-23 | ||
| Gene3D | 402 | 477 | 76 | 1.2E-14 | ||
| SUPERFAMILY | 402 | 475 | 74 | 1.31E-11 | ||
| Pfam | 408 | 484 | 77 | 7.1E-18 | ||
| SUPERFAMILY | 461 | 560 | 100 | 7.48E-25 | ||
| Gene3D | 483 | 565 | 83 | 8.3E-29 | ||
| CDD | 491 | 542 | 52 | 3.58541E-12 | – | |
| Pfam | 497 | 549 | 53 | 2.1E-20 | ||
| PRINTS | 501 | 513 | 13 | 3.3E-23 | ||
| PRINTS | 522 | 537 | 16 | 3.3E-23 | ||
| ProSitePatterns | 522 | 548 | 27 | - | ||
| PRINTS | 537 | 548 | 12 | 3.3E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sigma factor activity | Sigma factors act as the promoter specificity subunit of eubacterial and plant plastid multisubunit RNA polymerases, whose core subunit composition is often described as alpha(2)-beta-beta-prime. Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, the sigma factor binds specifically to promoter elements. The sigma subunit is released once elongation begins. |
Expression pattern of LotjaGi1g1v0556700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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