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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0558100 |
| Transcript ID | LotjaGi1g1v0558100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | phospholipase-like protein (PEARLI 4) family protein; TAIR: AT2G16900.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|Q9HK21|SMC_THEAC Chromosome partition protein Smc; TrEMBL-Plants: tr|A0A1J7G6Z8|A0A1J7G6Z8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0558100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109042404..109045558) extracted from Lotus japonicus Gifu genome v1.2.
AAACATTGTCATTATGGAATTTCATCTGGTCAAACGAAACAGTACCGGATGGAGAAGTCAATAAATGGACATTTCTCTTC CTCTCTTTCTCATTCGTTCATATTCAATCCTTTGCTTGCTGCCTCCTTTGCTCTATATATCTTGCATTCCCTTCTGCATT GAACCTATATAAATACCACACACTTCAACCTCATATATATTGGATTTTTAGTTTTGTTGTTGATGATGGCGGCTTCCAAC GGAACAGCAAGTAACCCCAACTGTCCTCATGCTTCTAATCCGTACCATCAATGCACCCAAGCTTGCTCCAAAAAGACCAG CCACCGAACCAAACCACACGCTAAGAACACTTCTTCATCAGGTTAGCTATATAGTTAGTTACTTGTTCTTTCTTCTGTTT CTGTCCATAGATAGATATAAATATATACTAATCTGTGATACATATATTTCCTTGATTTAAGGTTATCAACGGAGCGCAAC AGATGGTGAGCCCGGCAGCAAAAACACAAACAGAACACACTCAGGTTGTCCTAAAGCATCTAATCCTTACCATCACTGTG ATCACAATTGTTTAACCGCTTCAGGTTCACTTAATCACCTCCACCTTTAATTAATATGATCTAGATCTGTAACAATTTTC TTCTTTTTTATTTGTCTTGTTAGCATCTAATCCTTTATATGATCTCATCTATTTTCACATAAACAGAATCATCTAAAATA TAGTTGGTGAGTTTTTGAAGAATGAGATCCAGAAATTTTATAATATACTGTTTAATTTCAATCTCAGTGCTTTGTCAATG CTTTCATTTAAAACATGTCGTATATACACCAACAATATAATTCTGTTTTAAATTATACCAGTATGGAATTTTTTAGTACA ACTATTGGTTTTTGAAATGGGAACGAGAAGAATAAAGTTGGGAATCTTCGGATATTAGTCAACCATTTGGGTTCATTCAT AGGATAGCCATTTTGTTGACCATTTCTTGTAATGGGTTAGTTTAATTTATTTGACAAAACTTCTCACTGCGTTTTCTGTG CATCAATACATTCATACTAATTCTATTACTATCAGAGAAAAATATTGTAAATGGTTTAATCAGTTCATGATTCTCCTGCG TGCATCTGTTTAAAATTTTGATTGATATTACTTGTCCTCTATTTTCCTCACTTCCTTGATCTCTTCTGTATTGTTCCATG TTCCTTCAGTGAAATATATGTAGTTTTTTACCATGAGACAAATTGATAGCGAGCCTTTTTGTTAAGTATTCTTACCATTT GTCGTTAATATAACTGATGAACGGGTCAGTGATAAAGATCTTTTGCACTCCATGAATAAATATATATGTTTCTGAGTCAA ATCCATTCTTATTGCAGGTGCCGCGCCTCCTCCTTCAAATTTTGACAGGAGAAAGAAGCCAGGTTCTAGGCCAGAACCCC CTGTTGTTGCCGGCGCTGTTCCAGCCGCAAAAGTTGAAGCGATTCAGAAGTCTAATGCTTCATCACCAATATCAAATCAT TCTGAGATAAAAAAGGTGGAGTCAAGAAACGATGATCACAATCATTCTGTACCAGTTTCTGGACAAATACATGTCCCACT CCCAGTCCCTGATGTTAAGGTAGTGGCCTCTTCTACTCTCAAGCTCTAGTTTCTACAGCCCTTTTAGTGGGTGTTTGGAT CACAATTGATAAATTGACTTTAGTAAAATTGATTATGGTAAAAGTGAATTGAAGATAGTTGAAGTGAAGTGAAATGATTT ATATTTGGATACAATTATTGAAAATAGTGATTTGTGTAGGGTAATGTTGTAAAATCTAGAGGCAAACTATCACAATCGAT TATATTCAATTCAAAAACTACTCTCCAAAATGACTCTAAGACATCTATATTTCTGTTGCAATCTATAATTAACTTTACCC TTTCAGAATTGATTTTGTGGTCCTCCAATGAGGAGCCAAACACACGCCAAAATCCTTGGCTTTATACAAAACTAATGTTA AGCACATATGTAATTATTTGTGTATCTTTTTGTAGCATGTCCATGAAGAAGACCAACAAAAAAATGGTGTAGAGCACCTT GCCAATCCAATTCAAACAAAACAAGAGGACAAAACTGCTTCTGATGTCCACCCTGGAGAAGGTCTTGCTACTACTTTCAA AGGTGGATCCATAGATTTTAGTTTCTCTGGTATTATTCCACAGGGCAATGAAGATAATGATGATAAAGGAGATACAGAGT CTGTGGTATCCGAGTCCCGTGTTCCGGTAGGAAAGTACCATGTAAAAGAAAGTTTTGCTTCCATCTTGGAATCTATCCTT GACAAGTATGGAGACATAGGAGCGAGCTGTCATTTGGAATCACTTGTCTTGCGCTCATACTACATTGAGTGTGTTTGCTT TGTGGTCCAAGAGTTACAATCAGACTCAATAATGCACTTAACTAAGTCCAAAATCAATGAACTAGTGGCCATTCTGAAGG ATGTTGAGTCTGCTCAACTTCGCGTGGCGTGGTTGCGTAGCGCACTGGATGAAATAGCTGAAAATGTTGAAGTGATTAAC CAGCACCAGGAGGTGGATGCTGCAAAGGCCAACACTGATCGCGAAATGGAATCACTGAGGGAACAGCTAGAATCAGAAAT GGAAAGTTTGGCTGAGAAAGAACAAGAGGTTGCTGATATTAAAAAACGAATTCCAGAGATAAGCGATCGGTTGAAGGAGC TAGAGCTAAAGTCTGCTGAACTGGAGCAAAGCATGCTGTCTAGCAAGTCTGAGGTTGAAAATTTGCATCGCAAATCCTTG ATAGATGAGCTGTTGTAATATTGTTAATGTATCTGCTTATATAGCAAATTTGACTCTAAACTGCACACATATATGTTACT TTCTTAGCTAGGTCTCAGAAAGTAGAATAGGTTACTGAATAAATGGATGCGAGTAATATTTATTTGTAATAGATTACTAA ATCAGATGGAATTTTCTATCTCAGTATACAAATTATACACATACATGATACATGTGAGTTTTATGCATAATTTTTTGGTT TATTCAGAAATGGGAATGCATAGCGTTTCACAAGTAGTCATGTGACCATTTATTAACGTTTAATTTTAGCTATTTTTGTA TGAATGTAAGAACAATATTTTATGCTATAATTTTT
CDS sequence (LotjaGi1g1v0558100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCGGCTTCCAACGGAACAGCAAGTAACCCCAACTGTCCTCATGCTTCTAATCCGTACCATCAATGCACCCAAGC TTGCTCCAAAAAGACCAGCCACCGAACCAAACCACACGCTAAGAACACTTCTTCATCAGGTTATCAACGGAGCGCAACAG ATGGTGAGCCCGGCAGCAAAAACACAAACAGAACACACTCAGGTGCCGCGCCTCCTCCTTCAAATTTTGACAGGAGAAAG AAGCCAGGTTCTAGGCCAGAACCCCCTGTTGTTGCCGGCGCTGTTCCAGCCGCAAAAGTTGAAGCGATTCAGAAGTCTAA TGCTTCATCACCAATATCAAATCATTCTGAGATAAAAAAGGTGGAGTCAAGAAACGATGATCACAATCATTCTGTACCAG TTTCTGGACAAATACATGTCCCACTCCCAGTCCCTGATGTTAAGCATGTCCATGAAGAAGACCAACAAAAAAATGGTGTA GAGCACCTTGCCAATCCAATTCAAACAAAACAAGAGGACAAAACTGCTTCTGATGTCCACCCTGGAGAAGGTCTTGCTAC TACTTTCAAAGGTGGATCCATAGATTTTAGTTTCTCTGGTATTATTCCACAGGGCAATGAAGATAATGATGATAAAGGAG ATACAGAGTCTGTGGTATCCGAGTCCCGTGTTCCGGTAGGAAAGTACCATGTAAAAGAAAGTTTTGCTTCCATCTTGGAA TCTATCCTTGACAAGTATGGAGACATAGGAGCGAGCTGTCATTTGGAATCACTTGTCTTGCGCTCATACTACATTGAGTG TGTTTGCTTTGTGGTCCAAGAGTTACAATCAGACTCAATAATGCACTTAACTAAGTCCAAAATCAATGAACTAGTGGCCA TTCTGAAGGATGTTGAGTCTGCTCAACTTCGCGTGGCGTGGTTGCGTAGCGCACTGGATGAAATAGCTGAAAATGTTGAA GTGATTAACCAGCACCAGGAGGTGGATGCTGCAAAGGCCAACACTGATCGCGAAATGGAATCACTGAGGGAACAGCTAGA ATCAGAAATGGAAAGTTTGGCTGAGAAAGAACAAGAGGTTGCTGATATTAAAAAACGAATTCCAGAGATAAGCGATCGGT TGAAGGAGCTAGAGCTAAAGTCTGCTGAACTGGAGCAAAGCATGCTGTCTAGCAAGTCTGAGGTTGAAAATTTGCATCGC AAATCCTTGATAGATGAGCTGTTGTAA
Protein sequence (LotjaGi1g1v0558100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMAASNGTASNPNCPHASNPYHQCTQACSKKTSHRTKPHAKNTSSSGYQRSATDGEPGSKNTNRTHSGAAPPPSNFDRRK KPGSRPEPPVVAGAVPAAKVEAIQKSNASSPISNHSEIKKVESRNDDHNHSVPVSGQIHVPLPVPDVKHVHEEDQQKNGV EHLANPIQTKQEDKTASDVHPGEGLATTFKGGSIDFSFSGIIPQGNEDNDDKGDTESVVSESRVPVGKYHVKESFASILE SILDKYGDIGASCHLESLVLRSYYIECVCFVVQELQSDSIMHLTKSKINELVAILKDVESAQLRVAWLRSALDEIAENVE VINQHQEVDAAKANTDREMESLREQLESEMESLAEKEQEVADIKKRIPEISDRLKELELKSAELEQSMLSSKSEVENLHR KSLIDELL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 92 | 92 | - | – | |
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 10 | 408 | 399 | 2.9E-120 | – | |
| PANTHER | 10 | 408 | 399 | 2.9E-120 | – | |
| MobiDBLite | 39 | 70 | 32 | - | – | |
| Pfam | 204 | 405 | 202 | 5.4E-58 | ||
| Coils | 325 | 394 | 70 | - | – | |
| MobiDBLite | 388 | 408 | 21 | - | – | |
| MobiDBLite | 394 | 408 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0558100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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