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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0558500 |
| Transcript ID | LotjaGi1g1v0558500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SBP (S-ribonuclease binding protein) family protein; TAIR: AT4G35070.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A151SFE1|A0A151SFE1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0558500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109069623..109071458) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTCAATTACTCATATTCACAGATCACTTACGTGAGTTTGTGTCTCACACATACACATTGAAATCTGAATTGAATTC ATTGTTTAATTGAGAAGCAAACAAACAAACAACACCTCTGACCCGATAGTTGAGTCACAAAATCAGCATGTTGCTTAACG CGTCCCACACTCCTCTATCTTTAATGCATGCTTTGACGATGAAAAACTGAGAAAAAAGAGGAAGAAAAGTTAAAGGAACA GACACTGAGAGAAACCCTGCAGTATCCTAGGCCTTTCTTTATTTCCTTTTCAACTTTGTCAGTTACTATTTTTCACTCAT TCAAATATCAAAACCAATCCATTCATTTATTTTTTAATATTCTCTTTTCCCATTCTAACTAGTATAAATATATTTCCACA CCCCTCACTCACTGCCACCACCTTAAACAACTCTCATTCTTGCTTGCCCTCATCTTCCTAGAAGTGACAAGAAGACACCT TTTCATAATACTATGTGCAAGCAAAGAAATTCTGGGTGAAGGAGATTTTATTAGAGGAAAAGTTGTTCACTCTTCTGATT GTAGATCTGATCTTGAAAAACATGGCAATTGAAACTCAGTTGTATCCCAGCAATACAGGATTTCCATTTTGTGGATCACA ACAGCAATTGGATCCTGCTCTTGTTTTTCTTTCTACTCCCAATGCCACCGATAGATATAACAACAATCAACCTTTATCAA ATTCTTCTCAAAGAATGACTATTGATTTTGATGGACAGAGGGACCAGATTGATCAGTATATCAGATCACAGGTTAGTTTT CATTTTTACTACTTAAGGATTGAGTGAGTTTTATGTTTGTGTTGAATCTAATGTACCTTCTTTTTTATTTTGTTTGTGAC AGAATGAGAAATTGAGAATTTTGTTGCAAGAACAGAGAAATCAACAAGTGTTCACGTTGCTGAAAACGATGGAGTCAGAT GTGTCTTATGTACTGAGCCAGAAGGATGAACAAATAGCTCAAGCAGCTAAGAAAAAGACTGAATTAGAAGAGTTTTTGAT AAGATTAGAGGCAGAGAATCAATTATGGCGGAGAGTGGCTCAGGAAAACGAAGCAGTAGTCTTGTCACTGCACAACACCT TAGAACAAGTAAAAGAAAGAAATCGGGGGCTGGTAGCAGAAGATGCAGAGTCCTACTGTTGTGATGAGAACAGAGGAAAC AGGGTGATGCAAGAAGGAACAGGGGAAACAGAGGAAATAGGAAAAGAGACTACTGAACAGATTACTATGGTTTGCAAATG CTGTCATTCTCGAAGCTCGTGCTTTATGTTCCTTCCTTGCAGGCATCTTTGTTCATGCAAAGCTTGTGAGCCTTTTCTCC AAGCCTGTCCTGTGTGCAAAATGCCCAAGAAAACTAGCATAGAAACTTTGATTTTCTAGTCTCATATATTGAGACAAGTA GATAGAAAATCTGTTGATAAGATAGCTATAGGTCATGAGCACGTTCAATTTCAATGGTTGTTAGCTAGGTTTTATGCATT TCATTTTGCAAAAATATTTATTCCCTTAGGTATTTTATCAGACGTTAATTATTGTTACAATTTTTTTTATCTCCAGCTTC ATTCGGTAGTAGTATATTTGATGAAGATGTGATTACAATCAATGATAAGAAGACAACAATGCTGCCCAGCAATACTTATT TTAAAATTTTCAGATTAAACACTTCTTCCGTTATTTTACTGGGATTTGAGGTGGATCTGTCCAACTTAGACATTGTATCT AAATAACCTAAGAGAGGAAGTATATTATTAACCTTTTGGAGGATATTGTTCTTCTGAATTCCAAACTTGTTGACAC
CDS sequence (LotjaGi1g1v0558500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTGAAACTCAGTTGTATCCCAGCAATACAGGATTTCCATTTTGTGGATCACAACAGCAATTGGATCCTGCTCT TGTTTTTCTTTCTACTCCCAATGCCACCGATAGATATAACAACAATCAACCTTTATCAAATTCTTCTCAAAGAATGACTA TTGATTTTGATGGACAGAGGGACCAGATTGATCAGTATATCAGATCACAGAATGAGAAATTGAGAATTTTGTTGCAAGAA CAGAGAAATCAACAAGTGTTCACGTTGCTGAAAACGATGGAGTCAGATGTGTCTTATGTACTGAGCCAGAAGGATGAACA AATAGCTCAAGCAGCTAAGAAAAAGACTGAATTAGAAGAGTTTTTGATAAGATTAGAGGCAGAGAATCAATTATGGCGGA GAGTGGCTCAGGAAAACGAAGCAGTAGTCTTGTCACTGCACAACACCTTAGAACAAGTAAAAGAAAGAAATCGGGGGCTG GTAGCAGAAGATGCAGAGTCCTACTGTTGTGATGAGAACAGAGGAAACAGGGTGATGCAAGAAGGAACAGGGGAAACAGA GGAAATAGGAAAAGAGACTACTGAACAGATTACTATGGTTTGCAAATGCTGTCATTCTCGAAGCTCGTGCTTTATGTTCC TTCCTTGCAGGCATCTTTGTTCATGCAAAGCTTGTGAGCCTTTTCTCCAAGCCTGTCCTGTGTGCAAAATGCCCAAGAAA ACTAGCATAGAAACTTTGATTTTCTAG
Protein sequence (LotjaGi1g1v0558500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIETQLYPSNTGFPFCGSQQQLDPALVFLSTPNATDRYNNNQPLSNSSQRMTIDFDGQRDQIDQYIRSQNEKLRILLQE QRNQQVFTLLKTMESDVSYVLSQKDEQIAQAAKKKTELEEFLIRLEAENQLWRRVAQENEAVVLSLHNTLEQVKERNRGL VAEDAESYCCDENRGNRVMQEGTGETEEIGKETTEQITMVCKCCHSRSSCFMFLPCRHLCSCKACEPFLQACPVCKMPKK TSIETLIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 27 | 248 | 222 | 3.9E-53 | – | |
| PANTHER | 37 | 247 | 211 | 6.7E-87 | – | |
| PANTHER | 37 | 247 | 211 | 6.7E-87 | ||
| Coils | 108 | 128 | 21 | - | – | |
| Gene3D | 173 | 247 | 75 | 3.6E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0558500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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