Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0559800 |
| Transcript ID | LotjaGi1g1v0559800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endo-1,4-beta-xylanase; TAIR: AT4G38650.1 Glycosyl hydrolase family 10 protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|A0A0B2QJS4|A0A0B2QJS4_GLYSO Endo-1,4-beta-xylanase A; Found in the gene: LotjaGi1g1v0559800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109230870..109235816) extracted from Lotus japonicus Gifu genome v1.2.
TAACAGTCACATGAATCCCTCTTTCACAATTTGAATTAGCAGAGCATGTGAATGAAGCAGGACACTCACACAAGTCCTCT GTTCCCTTGTGATATAGTATCATATATCACCTCCCTCCACATTCATTTCTTGTCGTTTCTTTCTCCTTCCCTCTCGACTC TCGTGTTTTCTGGGAGACTGCAGACAGAACTACTAACACGGGCATATTTGTATTTATTTATGTATTATTTATATATGCTC AACTTAACACCCCCTTTCACACTCTAAGTCCAATGGTGCAAGATATTCCATCCTGTTGTCACATATTTTTCTTCCTTCTT CTTCTACTTCGCCCTTCTTCCGTTTCTCCTCTCTATGGTAAGTTAATTATAATTGCTATACTCCTTAACTTCCCTGACCA ACTAGTTTGAGAATCAAATTTGAAATCAATAATATTATTCATCAACTAGTTTTTTTTATTTCTGTGTTGCAGATGGGCCC CTATATGATTTTACTGCTTACACTGAGGTAATTAAAATACAAGCATTTCATGTTCATTCTTTGATGGAAAATTTAAAGGA CTACTTGTGCTGTGTCATTGTGTGTGTTGACACTTGACAGTGTAAAGAACATCCTGAGAAGCCACTTTACGGAGGAGGAA TCTTCAAAAGAGAGTCTCAGTACTCTCAAAGTGGTGCTGTTGTTGAAGATAGATTTGCCTCCAAAGCTGTCAATGGCTAC ATGCCTTCACTGCTTCTCAACAATCTCACTCAGGCCACCATCTACTCTTTTTCCAGTTAGCTCATGTTCTTTACACTCTT TCCATTACTTCATTTTTTAGCTTAAAAAACAGTCATTTTTTAATTAAAAAAATTAAATATTTATTTAAAAAAGAAAATTC CGTTGCCGGGACTTGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAACTAGACTACAACGGAATGTTGATGA TTAGCAAAAATATAAGTAATTATTTCTAAACATCATTTTTTCACAGTATGGGTGAGGGTTCAAGGTTCAAATTCAGCTAT GATAAGGGCCAGCCTGCAAGGGGAAAAAGATGCATTTGTTTGCATTGGGACAGTTTCGGCTAAGAGTGGATGCTGGTCGT TTCTGAAAGGTGGATTTGTTCTGGATTCACCTTCTAATTTATCTACAATCTTCATTCAGGTACCTTGCTTTTTTTCATCA TTTCATTCAGTGTTATAACTTTTCACCTTCATTAGTGATTTGCTTTAAGATATTTGGTAATTTATGCAGAATGCTGGTGG TAATGATGTCAATATAGATATAGCAAGCCCCTCACTCCAGCCATTTACCAAGCAGCAATGGAGAATCAATCAAGAATATA TAATTAATCATGTGAGGACAAGAAATTTCACTTCATTATTTGAGCAAAACAATGGAATGCATAGTTGTTGCTTCTTTTTA CTCACCATGTTCAAACAACCAAACTAATAGCGCTAATGGGTTTAGCTTTAACTAACCAATTTAGGTTCCAAAATTATTTC TAGCATTTGTATCTTTTTAACCTATGTATTGGCTTTTGTACATACAATGTAACCAAACAAATACTAACTAGATGTTTGGT TTCACGATTTGCACATAGTCCAATACACGTTTACTCAAAAACTAAGACCTGAATCCTCTAACCAGAAATGATTCTAAAGC AGTTCACTGTGGAACTAAACATGCTATGAACTGATCAAAAAGTGATTTTGTTGCGAAGACTCTCTCAATGAAGTAGGAAA AAAACAACAAAGTTATGTGCTTATAGAGCAAACAGCTGAAGGAAGAAGAATTTAATCTTGTTTCCCTCTTGCATTTGATA GCAAAGAAAGCGTGCCGTCACTATTCATGTCTCAGATGCTAAAGGAATGAAATTGCAAGGAGCTGCTATCTCTATAGAAC AAATCTCAAAAGACTTTCCTATTGGATCTGCCATAGCAAAGACCATTCTTGGAAACTTACCCTATCAGGTTTGCAATTGA ATATTTTACATGTACCCCATCATCCACAACATAGTAACAAAATAAGCCTCATTCATCTGTTTGTACAGAATTGGTTTGTG AAGCGGTTCAATGCTGCAGTCTTTGAAAATGAGCTCAAATGGTATGCCACTGAGCCTCATCAAGGCCAGGTCAATTACAC AATTTCAGACCAGATGCTGCAGTTCTTGAGAGCCAACAAAATCATAGCTAGAGGGCACAATATATTCTGGGAAGACCCTA AATACACTCCAGCATGGGTTCTCAACCTTACTGGTATTCAGTTACGATCTGCGGTGAACTCCCGAATACACAGTCTCATG AACCAATACAAAGAAGAGTTCATACACTGGGATGTCAGCAATGAAATGCTTCATTTTGATTTCTACGAGCAAAAGCTTGG ACCTGATGCCACATTGCACTTCTTTGAGACTGCACATAAGTCAGATCCTTTAGCAACCCTATTTATGAATGACTTCAATG TTGTGGAAACATGCAGTGATGTAAATTCCACTGTTGACGCTTTTATCTCAAAGATAAGAGAACTTCAACAAAATGGTGTC TTCATGGATGGAATTGGCTTGGAGGGTCACTTTACAACACCAAATCCTCCCCTTATCAGAGCTATCTTAGACAAGTTGGC AACACTAGATCTTCCTATTTGGCTTACTGAGGTTGATATAAGCAAGACACTTGATCAAGATACACAGGTGAGCAAGAGAA ATTCAAATTCTCATATATATAAATGAACAAAATTAAAATGGAATTGCCTTTTTTTTGCCTTATTGAATTAATCTCTTTGT TGTTGCTTAGGCAATTTATTTGGAACAAGTGTTGAGGGAAGGCTTCTCTTATCCTTCTGTGAATGGGATAATGCTTTGGA CTGCACTTCATCCAAATGGGTGCTACCAAATGTGCCTCACAGACAATGATTTCAGAAACCTCCCATCAGGTGATGTGGTA GACAAACTTCTTGAAGAGTGGCATACTGGTCTTGTAGAGGGAGTTGCAGATAAACAAGGTTCCCACAGCTTTTATGGGTT CTTGGGAGAGTATAGAATTAGTGTCAAGTATGGCAACAGGACTACAAGTTCAACATTCTCGCTCAGTGGAGGTGATGAAA CTAGACATTTCACTGTTACATTGTGAAACTTTTCTTTTATGTAAGAGACTGCTAACTTAACTAGAAACTCTAGTTTCAAA TTCAAATGCTATCATAGATTAATACATCTTTGTGACGTTTGTTACATTTTTGTTCTTCATGCACACTAAAATTTGTATCC CTTTGTAATTTGTATTACTGTATTAGTATCCACACTTGCTGTTCAGCTTGGTTATGATACTAGAGCAAATGTCATAGCCA TTGTGGTGGAATTGATTTGAATGAAATTCAAACATAGTTGTGTCTACCCTCTGATATTCTATGGTATCTAACAATTAAAC AAAAGCAAGAACCATTTCAAAAGCCACATAGGCACATACAATATAACATGTTGTATTCTGATATAATTACATAATTTACA ATCAAATTCACCCACATTTCCCAACCAACAAATAAAATATACAGTACAGGAGCACGGAGCACCATATCAGCTATGATCTA CAGATAATACAGAAAACATCAGAAAGAAACAATGATAATTTAAGAGGTGAAGTGGAAGCACAAGACATGGCAGAACAAAT TTGAGTTTTTAGAGAATTTTCAGACTTTTCCTTCAATTCTTGCATGGGTGAGTCCAACACAAGCATCAACAAAATCCTCA TCAATGAAATCAGTGGACAAAACCTGAAGCTTATCAGCGCAGCCGTTAGCGAAGCACTGAGCAATGAAGAGCCTAGCATA CCCATGAATGCGTCTGGTGACAGGTTTCACACACAGAACAGGGTTATCCGCCACCGGAGTCACCGTGTTCTCCACCCTGT AGAAGTATTTCCTCGCCGAAACCGGTGGATGCTCGCCCAAATGCTTCAAATTTCCATCGAACTTGGTTGATGGCAGATCA GTGTTGATCCAATTATCCTTCAGATACCCTGCACTCCACAGGGGATCCCCTGTTTTAGGCTGTGGAGATTTTCTCGGCTT CCAAACGCATATAACTCTCTTGGGTAACACCTCAGTGATGGTCTTGCCAAAAACATGATCATCCTGGGAAATCAAGTACT CACCCAAATTTTCCTCCAAGTACTTGGAGAATTCAGGTGGATCCTCATGGCCAAACTCTGTTCTGATCTCAAGGATTATG ATCTCATGCTCTGTTTCTGACAGAAACTTCTTGACATCATTGATCACAACATCAACACTGTAAGTAACGAGGATACCGTG GCACACACGGCGATTCTCCTCCACCCGAATGTCGAGAACACGGGTACCCTTCACAAGCTGGTTGTAGATGGAGAGTGATT GACATTGAGCAAAAGGGCGAGTGACGAGTGGGATACCAATCTTGTTTGTTGCAGAATCATGTGTTCCAGGCCAAACAATC TGGTTGATGTGAAGTTTCTCTGGGTTGAGACCACTCATCCAGTTTTTCCTGTCGGTGGGGTGGTATTCAGAGCCAGGGTA GTCTTCCCCTGAGCTTTTGAGATCATATAGAGTTTTCTTCTGGGTATGGATTGTCTTTCTTCTTTCAACCTGTTTAGAGA CTTGAGATCCCATCCTCAGTGTCAAAGATATCAGATGATGATGAAAAGTAGTTGTTCTTGATTCCTTGTTCTTCCTCTTC TGTAGTTTTGCTTTTTGTTCCAGCTAGAATTTGCTGTTGAACATAAAAGTCTCATCTCAATTGATTGGTTAACAATAATA ATAATAATTAAGGGGTTTGGTATGGTAGAGACTAATGAGATTTGGTAGAAATTAATGAGATTTGGATTTATAATTTCATC CAAATTATTCAATTATATTATTATTATTATTATTATTGACTTAAAGTATATAATGAGAGGATTGATG
CDS sequence (LotjaGi1g1v0559800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCACTGCTTCTCAACAATCTCACTCAGGCCACCATCTACTCTTTTTCCATATGGGTGAGGGTTCAAGGTTCAAA TTCAGCTATGATAAGGGCCAGCCTGCAAGGGGAAAAAGATGCATTTGTTTGCATTGGGACAGTTTCGGCTAAGAGTGGAT GCTGGTCGTTTCTGAAAGGTGGATTTGTTCTGGATTCACCTTCTAATTTATCTACAATCTTCATTCAGAATGCTGGTGGT AATGATGTCAATATAGATATAGCAAGCCCCTCACTCCAGCCATTTACCAAGCAGCAATGGAGAATCAATCAAGAATATAT AATTAATCATCAAAGAAAGCGTGCCGTCACTATTCATGTCTCAGATGCTAAAGGAATGAAATTGCAAGGAGCTGCTATCT CTATAGAACAAATCTCAAAAGACTTTCCTATTGGATCTGCCATAGCAAAGACCATTCTTGGAAACTTACCCTATCAGAAT TGGTTTGTGAAGCGGTTCAATGCTGCAGTCTTTGAAAATGAGCTCAAATGGTATGCCACTGAGCCTCATCAAGGCCAGGT CAATTACACAATTTCAGACCAGATGCTGCAGTTCTTGAGAGCCAACAAAATCATAGCTAGAGGGCACAATATATTCTGGG AAGACCCTAAATACACTCCAGCATGGGTTCTCAACCTTACTGGTATTCAGTTACGATCTGCGGTGAACTCCCGAATACAC AGTCTCATGAACCAATACAAAGAAGAGTTCATACACTGGGATGTCAGCAATGAAATGCTTCATTTTGATTTCTACGAGCA AAAGCTTGGACCTGATGCCACATTGCACTTCTTTGAGACTGCACATAAGTCAGATCCTTTAGCAACCCTATTTATGAATG ACTTCAATGTTGTGGAAACATGCAGTGATGTAAATTCCACTGTTGACGCTTTTATCTCAAAGATAAGAGAACTTCAACAA AATGGTGTCTTCATGGATGGAATTGGCTTGGAGGGTCACTTTACAACACCAAATCCTCCCCTTATCAGAGCTATCTTAGA CAAGTTGGCAACACTAGATCTTCCTATTTGGCTTACTGAGGTTGATATAAGCAAGACACTTGATCAAGATACACAGGCAA TTTATTTGGAACAAGTGTTGAGGGAAGGCTTCTCTTATCCTTCTGTGAATGGGATAATGCTTTGGACTGCACTTCATCCA AATGGGTGCTACCAAATGTGCCTCACAGACAATGATTTCAGAAACCTCCCATCAGGTGATGTGGTAGACAAACTTCTTGA AGAGTGGCATACTGGTCTTGTAGAGGGAGTTGCAGATAAACAAGGTTCCCACAGCTTTTATGGGTTCTTGGGAGAGTATA GAATTAGTGTCAAGTATGGCAACAGGACTACAAGTTCAACATTCTCGCTCAGTGGAGGTGATGAAACTAGACATTTCACT GTTACATTGTGA
Protein sequence (LotjaGi1g1v0559800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSLLLNNLTQATIYSFSIWVRVQGSNSAMIRASLQGEKDAFVCIGTVSAKSGCWSFLKGGFVLDSPSNLSTIFIQNAGG NDVNIDIASPSLQPFTKQQWRINQEYIINHQRKRAVTIHVSDAKGMKLQGAAISIEQISKDFPIGSAIAKTILGNLPYQN WFVKRFNAAVFENELKWYATEPHQGQVNYTISDQMLQFLRANKIIARGHNIFWEDPKYTPAWVLNLTGIQLRSAVNSRIH SLMNQYKEEFIHWDVSNEMLHFDFYEQKLGPDATLHFFETAHKSDPLATLFMNDFNVVETCSDVNSTVDAFISKIRELQQ NGVFMDGIGLEGHFTTPNPPLIRAILDKLATLDLPIWLTEVDISKTLDQDTQAIYLEQVLREGFSYPSVNGIMLWTALHP NGCYQMCLTDNDFRNLPSGDVVDKLLEEWHTGLVEGVADKQGSHSFYGFLGEYRISVKYGNRTTSSTFSLSGGDETRHFT VTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 482 | 481 | 8.2E-261 | – | |
| PANTHER | 2 | 482 | 481 | 8.2E-261 | – | |
| Gene3D | 3 | 89 | 87 | 4.5E-7 | ||
| SUPERFAMILY | 129 | 431 | 303 | 7.04E-91 | ||
| ProSiteProfiles | 129 | 425 | 297 | 34.671 | ||
| Gene3D | 131 | 433 | 303 | 2.8E-70 | – | |
| Pfam | 137 | 396 | 260 | 2.1E-46 | ||
| SMART | 175 | 426 | 252 | 2.6E-10 | ||
| PRINTS | 206 | 218 | 13 | 2.9E-6 | ||
| PRINTS | 250 | 261 | 12 | 2.9E-6 | ||
| PRINTS | 288 | 299 | 12 | 2.9E-6 | ||
| PRINTS | 321 | 333 | 13 | 2.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0559800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…