Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0559900 |
| Transcript ID | LotjaGi1g1v0559900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-phosphatidylinositol phosphodiesterase-like protein; TAIR: AT4G38690.1 PLC-like phosphodiesterases superfamily protein; Swiss-Prot: sp|P34024|PLC_LISMO 1-phosphatidylinositol phosphodiesterase; TrEMBL-Plants: tr|I3T950|I3T950_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0559900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109234569..109235522) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGATCTCAAGTCTCTAAACAGGTTGAAAGAAGAAAGACAATCCATACCCAGAAGAAAACTCTATATGATCTCAAAAG CTCAGGGGAAGACTACCCTGGCTCTGAATACCACCCCACCGACAGGAAAAACTGGATGAGTGGTCTCAACCCAGAGAAAC TTCACATCAACCAGATTGTTTGGCCTGGAACACATGATTCTGCAACAAACAAGATTGGTATCCCACTCGTCACTCGCCCT TTTGCTCAATGTCAATCACTCTCCATCTACAACCAGCTTGTGAAGGGTACCCGTGTTCTCGACATTCGGGTGGAGGAGAA TCGCCGTGTGTGCCACGGTATCCTCGTTACTTACAGTGTTGATGTTGTGATCAATGATGTCAAGAAGTTTCTGTCAGAAA CAGAGCATGAGATCATAATCCTTGAGATCAGAACAGAGTTTGGCCATGAGGATCCACCTGAATTCTCCAAGTACTTGGAG GAAAATTTGGGTGAGTACTTGATTTCCCAGGATGATCATGTTTTTGGCAAGACCATCACTGAGGTGTTACCCAAGAGAGT TATATGCGTTTGGAAGCCGAGAAAATCTCCACAGCCTAAAACAGGGGATCCCCTGTGGAGTGCAGGGTATCTGAAGGATA ATTGGATCAACACTGATCTGCCATCAACCAAGTTCGATGGAAATTTGAAGCATTTGGGCGAGCATCCACCGGTTTCGGCG AGGAAATACTTCTACAGGGTGGAGAACACGGTGACTCCGGTGGCGGATAACCCTGTTCTGTGTGTGAAACCTGTCACCAG ACGCATTCATGGGTATGCTAGGCTCTTCATTGCTCAGTGCTTCGCTAACGGCTGCGCTGATAAGCTTCAGGTTTTGTCCA CTGATTTCATTGATGAGGATTTTGTTGATGCTTGTGTTGGACTCACCCATGCAAGAATTGAAGGAAAAGTCTGA
CDS sequence (LotjaGi1g1v0559900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATCTCAAGTCTCTAAACAGGTTGAAAGAAGAAAGACAATCCATACCCAGAAGAAAACTCTATATGATCTCAAAAG CTCAGGGGAAGACTACCCTGGCTCTGAATACCACCCCACCGACAGGAAAAACTGGATGAGTGGTCTCAACCCAGAGAAAC TTCACATCAACCAGATTGTTTGGCCTGGAACACATGATTCTGCAACAAACAAGATTGGTATCCCACTCGTCACTCGCCCT TTTGCTCAATGTCAATCACTCTCCATCTACAACCAGCTTGTGAAGGGTACCCGTGTTCTCGACATTCGGGTGGAGGAGAA TCGCCGTGTGTGCCACGGTATCCTCGTTACTTACAGTGTTGATGTTGTGATCAATGATGTCAAGAAGTTTCTGTCAGAAA CAGAGCATGAGATCATAATCCTTGAGATCAGAACAGAGTTTGGCCATGAGGATCCACCTGAATTCTCCAAGTACTTGGAG GAAAATTTGGGTGAGTACTTGATTTCCCAGGATGATCATGTTTTTGGCAAGACCATCACTGAGGTGTTACCCAAGAGAGT TATATGCGTTTGGAAGCCGAGAAAATCTCCACAGCCTAAAACAGGGGATCCCCTGTGGAGTGCAGGGTATCTGAAGGATA ATTGGATCAACACTGATCTGCCATCAACCAAGTTCGATGGAAATTTGAAGCATTTGGGCGAGCATCCACCGGTTTCGGCG AGGAAATACTTCTACAGGGTGGAGAACACGGTGACTCCGGTGGCGGATAACCCTGTTCTGTGTGTGAAACCTGTCACCAG ACGCATTCATGGGTATGCTAGGCTCTTCATTGCTCAGTGCTTCGCTAACGGCTGCGCTGATAAGCTTCAGGTTTTGTCCA CTGATTTCATTGATGAGGATTTTGTTGATGCTTGTGTTGGACTCACCCATGCAAGAATTGAAGGAAAAGTCTGA
Protein sequence (LotjaGi1g1v0559900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSQVSKQVERRKTIHTQKKTLYDLKSSGEDYPGSEYHPTDRKNWMSGLNPEKLHINQIVWPGTHDSATNKIGIPLVTRP FAQCQSLSIYNQLVKGTRVLDIRVEENRRVCHGILVTYSVDVVINDVKKFLSETEHEIIILEIRTEFGHEDPPEFSKYLE ENLGEYLISQDDHVFGKTITEVLPKRVICVWKPRKSPQPKTGDPLWSAGYLKDNWINTDLPSTKFDGNLKHLGEHPPVSA RKYFYRVENTVTPVADNPVLCVKPVTRRIHGYARLFIAQCFANGCADKLQVLSTDFIDEDFVDACVGLTHARIEGKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 12 | 314 | 303 | 2.7E-180 | – | |
| PANTHER | 12 | 314 | 303 | 2.7E-180 | – | |
| CDD | 32 | 312 | 281 | 1.80434E-171 | – | |
| SUPERFAMILY | 41 | 308 | 268 | 1.15E-55 | ||
| Gene3D | 41 | 309 | 269 | 3.3E-32 | ||
| SMART | 50 | 192 | 143 | 1.1E-5 | ||
| ProSiteProfiles | 56 | 184 | 129 | 13.091 | – | |
| Pfam | 74 | 173 | 100 | 3.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Molecular function | Phosphoric diester hydrolase activity | Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. |
Expression pattern of LotjaGi1g1v0559900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…