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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000909
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 31 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.524s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0063279.1
n.a. PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X2 [Cicer arietinum] gi|502152866|ref|XP_004509132.1| chr0 21428213 21432976 +
2 domain predictions
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Lj0g3v0130579.1
n.a. PREDICTED: phosphoinositide phospholipase C 6-like [Cicer arietinum] gi|502097439|ref|XP_004490993.1| chr0 59257145 59261182 +
4 domain predictions
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Lj1g3v3041520.1
n.a. PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max] gi|356567107|ref|XP_003551764.1| chr1 34737895 34740428 +
2 domain predictions
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Lj1g3v3343840.1
n.a. PLC-like phosphodiesterases superfamily protein [Theobroma cacao] gi|508705833|gb|EOX97729.1| chr1 38286117 38287431 -
4 domain predictions
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Lj2g3v1880850.1
n.a. PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Cicer arietinum] gi|502160829|ref|XP_004511918.1| chr2 28053430 28061790 +
2 domain predictions
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Lj2g3v1890930.1
n.a. PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max] gi|356540674|ref|XP_003538811.1| chr2 28103010 28107234 -
2 domain predictions
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Lj2g3v2256390.1
n.a. PREDICTED: phosphoinositide phospholipase C 4-like [Cicer arietinum] gi|502096021|ref|XP_004490600.1| chr2 33184565 33193608 +
4 domain predictions
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Lj2g3v2256400.1
n.a. PREDICTED: phosphoinositide phospholipase C 2-like [Cicer arietinum] gi|502096024|ref|XP_004490601.1| chr2 33194152 33208074 +
4 domain predictions
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Lj2g3v2748690.1
n.a. PREDICTED: phosphoinositide phospholipase C 2-like [Cicer arietinum] gi|502097443|ref|XP_004490994.1| chr2 36378390 36382554 +
4 domain predictions
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Lj3g3v3500050.1
n.a. PREDICTED: 1-phosphatidylinositol phosphodiesterase-like [Glycine max] gi|356516666|ref|XP_003527014.1| chr3 42496841 42498927 -
4 domain predictions
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Lj4g3v0620030.1
n.a. PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max] gi|356502503|ref|XP_003520058.1| chr4 9416319 9420986 +
3 domain predictions
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Lj4g3v0620060.2
n.a. PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max] gi|356502505|ref|XP_003520059.1| chr4 9429492 9434178 +
2 domain predictions
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Lj4g3v1535110.1
n.a. PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum] gi|502152277|ref|XP_004508850.1| chr4 23029802 23034710 -
2 domain predictions
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Lj6g3v0521600.2
n.a. PREDICTED: phosphoinositide phospholipase C 2-like isoform X1 [Cicer arietinum] gi|502129981|ref|XP_004500490.1| chr6 5082797 5087998 -
4 domain predictions
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Lj6g3v0521600.3
n.a. PREDICTED: phosphoinositide phospholipase C 2-like isoform X2 [Cicer arietinum] gi|502129984|ref|XP_004500491.1| chr6 5082797 5087998 -
4 domain predictions
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Lj6g3v0521670.1
n.a. PREDICTED: phosphoinositide phospholipase C 6-like [Glycine max] gi|356539975|ref|XP_003538468.1| chr6 5110938 5116642 -
4 domain predictions
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LotjaGi1g1v0077600.1
n.a. Phosphoinositide phospholipase C; TAIR: AT3G08510.1 phospholipase C 2; Swiss-Prot: sp|Q39033|PLCD2_ARATH Phosphoinositide phospholipase C 2; TrEMBL-Plants: tr|Q43443|Q43443_SOYBN Phosphoinositide phospholipase C; Found in the gene: LotjaGi1g1v0077600 LjG1.1_chr1 11210093 11214949 -
3 domain predictions
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LotjaGi1g1v0077700.1
n.a. Phosphoinositide phospholipase C; TAIR: AT2G40116.1 Phosphoinositide-specific phospholipase C family protein; Swiss-Prot: sp|Q8GV43|PLCD6_ARATH Phosphoinositide phospholipase C 6; TrEMBL-Plants: tr|G7KH09|G7KH09_MEDTR Phosphoinositide phospholipase C; Found in the gene: LotjaGi1g1v0077700 LjG1.1_chr1 11219104 11223311 -
3 domain predictions
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LotjaGi1g1v0077700.2
n.a. Phosphoinositide phospholipase C; TAIR: AT2G40116.1 Phosphoinositide-specific phospholipase C family protein; Swiss-Prot: sp|Q8GV43|PLCD6_ARATH Phosphoinositide phospholipase C 6; TrEMBL-Plants: tr|G7KH09|G7KH09_MEDTR Phosphoinositide phospholipase C; Found in the gene: LotjaGi1g1v0077700 LjG1.1_chr1 11219256 11223138 -
3 domain predictions
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LotjaGi1g1v0077700.3
n.a. Phosphoinositide phospholipase C; TAIR: AT2G40116.1 Phosphoinositide-specific phospholipase C family protein; Swiss-Prot: sp|Q8GV43|PLCD6_ARATH Phosphoinositide phospholipase C 6; TrEMBL-Plants: tr|G7KH09|G7KH09_MEDTR Phosphoinositide phospholipase C; Found in the gene: LotjaGi1g1v0077700 LjG1.1_chr1 11219356 11221865 -
3 domain predictions
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LotjaGi1g1v0077800.1
n.a. Phosphoinositide phospholipase C; TAIR: AT2G40116.1 Phosphoinositide-specific phospholipase C family protein; Swiss-Prot: sp|Q8GV43|PLCD6_ARATH Phosphoinositide phospholipase C 6; TrEMBL-Plants: tr|A0A151R1A5|A0A151R1A5_CAJCA Phosphoinositide phospholipase C; Found in the gene: LotjaGi1g1v0077800 LjG1.1_chr1 11256904 11261952 -
3 domain predictions
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LotjaGi1g1v0120100.1
n.a. Phosphoinositide phospholipase C; TAIR: AT3G08510.1 phospholipase C 2; Swiss-Prot: sp|Q39033|PLCD2_ARATH Phosphoinositide phospholipase C 2; TrEMBL-Plants: tr|G7JZH5|G7JZH5_MEDTR Phosphoinositide phospholipase C; Found in the gene: LotjaGi1g1v0120100 LjG1.1_chr1 18981931 18994721 -
3 domain predictions
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LotjaGi1g1v0120200.1
n.a. Phosphoinositide phospholipase C; TAIR: AT5G58700.1 phosphatidylinositol-speciwc phospholipase C4; Swiss-Prot: sp|Q944C1|PLCD4_ARATH Phosphoinositide phospholipase C 4; TrEMBL-Plants: tr|G7KE98|G7KE98_MEDTR Phosphoinositide phospholipase C; Found in the gene: LotjaGi1g1v0120200 LjG1.1_chr1 18995173 19004188 -
3 domain predictions
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LotjaGi1g1v0559900.1
n.a. 1-phosphatidylinositol phosphodiesterase-like protein; TAIR: AT4G38690.1 PLC-like phosphodiesterases superfamily protein; Swiss-Prot: sp|P34024|PLC_LISMO 1-phosphatidylinositol phosphodiesterase; TrEMBL-Plants: tr|I3T950|I3T950_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0559900 LjG1.1_chr1 109234569 109235522 -
3 domain predictions
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LotjaGi4g1v0075700.1
n.a. PI-PLC X domain-containing protein; TAIR: AT1G49740.1 PLC-like phosphodiesterases superfamily protein; Swiss-Prot: sp|Q93XX5|Y5713_ARATH PI-PLC X domain-containing protein At5g67130; TrEMBL-Plants: tr|Q75PK4|Q75PK4_LOTJA Putative uncharacterized protein LjNUF; Found in the gene: LotjaGi4g1v0075700 LjG1.1_chr4 9695933 9704621 +
2 domain predictions
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LotjaGi4g1v0075700.2
n.a. PI-PLC X domain-containing protein; TAIR: AT1G49740.1 PLC-like phosphodiesterases superfamily protein; Swiss-Prot: sp|Q93XX5|Y5713_ARATH PI-PLC X domain-containing protein At5g67130; TrEMBL-Plants: tr|Q75PK4|Q75PK4_LOTJA Putative uncharacterized protein LjNUF; Found in the gene: LotjaGi4g1v0075700 LjG1.1_chr4 9695933 9704621 +
2 domain predictions
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LotjaGi4g1v0075700.3
n.a. PI-PLC X domain-containing protein; TAIR: AT1G49740.1 PLC-like phosphodiesterases superfamily protein; Swiss-Prot: sp|Q93XX5|Y5713_ARATH PI-PLC X domain-containing protein At5g67130; TrEMBL-Plants: tr|Q75PK4|Q75PK4_LOTJA Putative uncharacterized protein LjNUF; Found in the gene: LotjaGi4g1v0075700 LjG1.1_chr4 9696038 9700956 +
2 domain predictions
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LotjaGi6g1v0074900_LC.1
n.a. Phosphoinositide phospholipase C; TAIR: AT5G58690.1 phosphatidylinositol-speciwc phospholipase C5; Swiss-Prot: sp|Q944C2|PLCD5_ARATH Phosphoinositide phospholipase C 5; TrEMBL-Plants: tr|G7JBA2|G7JBA2_MEDTR Phosphoinositide phospholipase C; Found in the gene: LotjaGi6g1v0074900_LC LjG1.1_chr6 14207932 14226716 +
3 domain predictions
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LotjaGi6g1v0075400.1
n.a. Phosphoinositide phospholipase C; TAIR: AT2G40116.1 Phosphoinositide-specific phospholipase C family protein; Swiss-Prot: sp|Q8GV43|PLCD6_ARATH Phosphoinositide phospholipase C 6; TrEMBL-Plants: tr|K7LRR0|K7LRR0_SOYBN Phosphoinositide phospholipase C; Found in the gene: LotjaGi6g1v0075400 LjG1.1_chr6 14248616 14254581 +
3 domain predictions
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LotjaGi6g1v0075500.1
n.a. Phosphoinositide phospholipase C; TAIR: AT3G08510.1 phospholipase C 2; Swiss-Prot: sp|Q39033|PLCD2_ARATH Phosphoinositide phospholipase C 2; TrEMBL-Plants: tr|A0A0S3S0S5|A0A0S3S0S5_PHAAN Phosphoinositide phospholipase C; Found in the gene: LotjaGi6g1v0075500 LjG1.1_chr6 14287116 14293406 +
3 domain predictions
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LotjaGi6g1v0075500.2
n.a. Phosphoinositide phospholipase C; TAIR: AT3G08510.1 phospholipase C 2; Swiss-Prot: sp|Q39033|PLCD2_ARATH Phosphoinositide phospholipase C 2; TrEMBL-Plants: tr|A0A0S3S0S5|A0A0S3S0S5_PHAAN Phosphoinositide phospholipase C; Found in the gene: LotjaGi6g1v0075500 LjG1.1_chr6 14287116 14293406 +
3 domain predictions
 –