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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0560600 |
| Transcript ID | LotjaGi1g1v0560600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER lumen protein retaining receptor; TAIR: AT2G21190.1 ER lumen protein retaining receptor family protein; Swiss-Prot: sp|Q09473|ERD22_CAEEL Putative ER lumen protein-retaining receptor C28H8.4; TrEMBL-Plants: tr|A0A1J7HPK1|A0A1J7HPK1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0560600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109281522..109284220) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCGAACGCCACAATCAATCGTTAATTAAGGCGGAGGGAAGCAGAGGAAGAAGAAGAAGAAGAAATAGAAAGATGATG ACGGGTGACAAGAAAAAGCCGATCCACGCCATCACCACATGGGTGCGGCGGCAGCCACCGAAGGTCAAGGCCTTTCTCGC CGTCGTTTCTGGCATGGCGGCTTTGGTGGTTCTCCGCTTCATTGTTCACGACCACGACAACCTCTTCGTAGCCGCTGAGG CTGTCCACTCCCTTGGAATTTCTCTTCTCATCTACAAGCTCATCAAAGAGAAGACATGTGCCGGTACGTAAAATTCATCA TTCAATTCGCTTCATGCATATTTCAGATGGAATATGATATATATATCCCTGCAATTTCACCTATAATTGATATGGTGAAA ATGTTGAATTGTGTGGAGATTGTTTCTTTCTTGCATGCATGTAGAAAATGTTGAAACACTGTTTTGCACTTTCACCTATA ATTGATCTATTATTATTATTATTATTATTATTATTATTATTATTATTAATAATGTGCTTGTTTCATGATGAATTTGTTGA ACTATGTATGGCATTGTTTGGCTGGTTTTGATTTCCTCTTTTTCCTTGACAATTGTTGGTGAATTAAAAAAGAGGCATAG AATATGATATATCTTAAATAGAGACAATTGAAGGGTGTGATACCAAATTTCTGAATCATTATTATCTAAAAAAAATTATT ATGTGCAGGATTGTCCCTAAAATCCCAGGAATTAACAGCTATGTTTCTAGCTGTCAGGCTGTACTGCAGTTTTGTCATGG AATATGATATACACACTTTGCTTGATTTGTCTACTTTGGCAACAACATTGTGGGTTATATACATGATTCGTTTTAATTTG AAGTCTAGTTACATGGAGGAGAAGGACAACTTTGCAATATACTATGTGGTAAGCACCCTATCATCTCATTCTAAAATTTA AGCTCCAATTTTCAAACGAAGCCGACATTTATCAAGACTGTTGTACTAGAGCTGTCAATTTTTATCCTTGCTACATCATT TGTGCAAAGAAAAAAGCCCTGGCATCTTATAGAAGCTACTGTAGAGTGTAGGTGATATTTGAATGTGGTTTTTCTTTAAC TTAACTTTAAGGATTTTTATTTATTCCTCTTTTGAATGAATTTGCATTGCCACTTACTGACAATTACTTGTGTATTGACC TACTCTATTTATGAAATTGAATGCAGGTGGCACCCTGTGCTGTCTTAGCCTTGTTTATTCATCCATCAACTTCTCATCAT TTATTGAACAGAATTTTTTGGGCGTTCTGTGTTTATCTGGAAGCCGTGTCAGTGCTACCCCAATTGCGAGTCATGCAGAA CACCCAAGTAAATAAAATTCCTATGTACAAATTACATACAGGATCAAATTCTACACCATTCCTTCCTAATTCATTTCAAT TTATAATTTCAGATTGTTGAGCCATTCACAGCACATTATGTATTTGCATTGGGTGTTGCAAGATTCCTGAGCTGTGCTCA TTGGGTTCTTCAGGTATGATCCTTTCACCCAAACTCGTATTTCATTAGTCAGCTCATTGGTATTTTGCGTCTGTCTGAGT TTTCTTTTGAATTTTTATATGTTGATTTTTAAATTTACATCCAGTTACATAGTCAGGGAGAGGGTTCCGAGTTTGATGTT CATAGCACATTTCTATAGTAGCGCAATTTTATTGGATACATAAAATGCTGGTCTCCTACTAAATTAACATTTCCTGCAAC AGGTGTTAGATAGTCGTGGACATTTGTTGGTTGCCTTGGGGTATGGTTTATGGCCTTCAATGGTTCTTATCTCAGAAATT GTACAGACTTTTATATTAGCAGATTTCTGTTACTATTATGTCAAAAGGTTAGTTTATAATTCTTTCGCCTTTTGGCTCTT TCTTGCTTTCCTGATGGTATCTCAAGAACTTTCCAGCATGATTCTTACCCTTATGATACTTAATTTGTTGCAGTGTTTTC GGGGGACAGCTTGTTCTCCGTCTTCCCTCTGGAGTGGTGTGATTGAAGATTCAGTTCAGTCATTTAAATTAACTTAATCA AGCAATTTGGTCAACGTTGCAGTCAATCTTGTGATGACAAAGTTTGGCTCCTTGGAAGATGCTGGTTCTCTGTAAATTTT GGGATGAAGGAAAGACTATATATTTTTGTTTTAAGTTATAGTATTTGTAGTTGGAGATGCTGTCTCTTTTACAAAGACTC TCTTAATTCAGTTCTTCAAATAACTATTCCACGTGCTCAAGTTCTAACCAAAAAATTATCCGTGTAGTCGTATGTAAAGT AGCATTGCTTGAGCCTCTGTGGGACTCATCCGCAAGTTGTTTGAAAGGATTATGTCTAACATAACATTTATTTTATGGTT TTGTTTTGCCAAAGTCCAAAATCAGCATTTGAGTTTTATATCACGAATATGGCACCATGGACCATGGTAATAATGCACAT TGCATTCAAATTTGATTCAAAGTAGGAGAAACATACAATTTTAGTCAGGCACCTAGGTTCCTGGCAAGAAATAGAATTCT TAAAAGTAATCTAAGGTCACAAGGCCCATCAGAGAATTGGCGTATCCAATCGAGAGCTCCTCTGGTTGCAGCTTGTTAAT CCCTTGTTCTGGAATTCAACTAGAGCCTTTAACTTGTAACCGAACCCTTTAGTGTTGCG
CDS sequence (LotjaGi1g1v0560600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGACGGGTGACAAGAAAAAGCCGATCCACGCCATCACCACATGGGTGCGGCGGCAGCCACCGAAGGTCAAGGCCTT TCTCGCCGTCGTTTCTGGCATGGCGGCTTTGGTGGTTCTCCGCTTCATTGTTCACGACCACGACAACCTCTTCGTAGCCG CTGAGGCTGTCCACTCCCTTGGAATTTCTCTTCTCATCTACAAGCTCATCAAAGAGAAGACATGTGCCGGATTGTCCCTA AAATCCCAGGAATTAACAGCTATGTTTCTAGCTGTCAGGCTGTACTGCAGTTTTGTCATGGAATATGATATACACACTTT GCTTGATTTGTCTACTTTGGCAACAACATTGTGGGTTATATACATGATTCGTTTTAATTTGAAGTCTAGTTACATGGAGG AGAAGGACAACTTTGCAATATACTATGTGGTGGCACCCTGTGCTGTCTTAGCCTTGTTTATTCATCCATCAACTTCTCAT CATTTATTGAACAGAATTTTTTGGGCGTTCTGTGTTTATCTGGAAGCCGTGTCAGTGCTACCCCAATTGCGAGTCATGCA GAACACCCAAATTGTTGAGCCATTCACAGCACATTATGTATTTGCATTGGGTGTTGCAAGATTCCTGAGCTGTGCTCATT GGGTTCTTCAGGTGTTAGATAGTCGTGGACATTTGTTGGTTGCCTTGGGGTATGGTTTATGGCCTTCAATGGTTCTTATC TCAGAAATTGTACAGACTTTTATATTAGCAGATTTCTGTTACTATTATGTCAAAAGTGTTTTCGGGGGACAGCTTGTTCT CCGTCTTCCCTCTGGAGTGGTGTGA
Protein sequence (LotjaGi1g1v0560600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMTGDKKKPIHAITTWVRRQPPKVKAFLAVVSGMAALVVLRFIVHDHDNLFVAAEAVHSLGISLLIYKLIKEKTCAGLSL KSQELTAMFLAVRLYCSFVMEYDIHTLLDLSTLATTLWVIYMIRFNLKSSYMEEKDNFAIYYVVAPCAVLALFIHPSTSH HLLNRIFWAFCVYLEAVSVLPQLRVMQNTQIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLI SEIVQTFILADFCYYYVKSVFGGQLVLRLPSGVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 6 | 274 | 269 | 1.3E-168 | – | |
| PANTHER | 6 | 274 | 269 | 1.3E-168 | ||
| Phobius | 26 | 44 | 19 | - | – | |
| TMHMM | 26 | 45 | 20 | - | – | |
| Phobius | 45 | 49 | 5 | - | – | |
| Phobius | 50 | 70 | 21 | - | – | |
| PRINTS | 50 | 69 | 20 | 2.8E-15 | ||
| Phobius | 71 | 81 | 11 | - | – | |
| Pfam | 74 | 216 | 143 | 2.4E-39 | ||
| PRINTS | 77 | 97 | 21 | 2.8E-15 | ||
| Phobius | 82 | 100 | 19 | - | – | |
| Phobius | 101 | 105 | 5 | - | – | |
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 106 | 127 | 22 | - | – | |
| Phobius | 128 | 138 | 11 | - | – | |
| TMHMM | 138 | 156 | 19 | - | – | |
| Phobius | 139 | 156 | 18 | - | – | |
| Phobius | 157 | 161 | 5 | - | – | |
| Phobius | 162 | 183 | 22 | - | – | |
| TMHMM | 166 | 183 | 18 | - | – | |
| PRINTS | 168 | 188 | 21 | 2.8E-15 | ||
| Phobius | 184 | 194 | 11 | - | – | |
| PRINTS | 190 | 204 | 15 | 2.8E-15 | ||
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 195 | 216 | 22 | - | – | |
| PRINTS | 204 | 222 | 19 | 2.8E-15 | ||
| Phobius | 217 | 235 | 19 | - | – | |
| TMHMM | 227 | 249 | 23 | - | – | |
| Phobius | 236 | 257 | 22 | - | – | |
| Phobius | 258 | 274 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein retention in ER lumen | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ER retention sequence binding | Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. |
Expression pattern of LotjaGi1g1v0560600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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