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LotjaGi1g1v0567800.3

Overview

Field Value
Gene ID LotjaGi1g1v0567800
Transcript ID LotjaGi1g1v0567800.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G42970.1 glyceraldehyde-3-phosphate dehydrogenase B subunit; Swiss-Prot: sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic; TrEMBL-Plants: tr|I1K7A9|I1K7A9_SOYBN Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi1g1v0567800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:110107166..110110302) extracted from Lotus japonicus Gifu genome v1.2.

ATATATACTACTAGTTTCATCAGCTTAAAAGTGATCATTTCCTTACTTCACTTAATTTTGCTTTTGCAGAGGCTTGAGGT GACAGAATTCTCTGGCCTAAGATCAAGTTCATGCGTCACCTATGCCAATAATGCTAGAGAGTCTTCCTTTTTTGATGTTG TAGCTGCCCAACTCACTCCCAAGGTTAATTTCTTATTTATTTTGTGTTCTTTCAATCAACTTAATTAATATATTATGACA TGTTTGATACTCTGCAAACCATGATAAATGCAGTAGTTTAATGGTTCCTTGTAAAGCTGTATATATATAATATAATCAGT CATGAAGTGAATATCAATATTATAACACATAATAATTGACATCTTTGATAGATGGAGCTAAATAGGTTCAGTTTCTCAAT GTAATCATTTTTTGGTTTGCTTGTACATAATTTGTAATTTGTAATTTGTGAGTTAACATCAGGCAATTGGTTCAACTGCT GTGAGGGGAGAAACTGTGGCTAAGTTGAAGGTAGCGATCAATGGTTTTGGACGTATTGGTAGAAATTTCCTGCGCTGCTG GCACGGCCGAAAGGACTCACCCCTTGAGGTGATTGTTGTCAATGACAGTGGTGGTGTGAAGAATGTAAGTTTCTTAAATG GCATTGCCCTTCAATTAGCTTGGCTGAGTTTGTTTTGTTATTAGTACAGATTCATGGCATTTTTTGGAAATCTTTCTACA ATTGATTCTATATCCTGAATTAATTCTGGTGAGAAGCTGCTGCTATGAGTAGCTTCTGGGTGTCAGAATTGATTCTGAGA AAAAAGTTGATCCAAACGTGCTATCATTAGTTTCACTGAATAATGCGAATGCTAGTTAATGACTTGTTTCTTCACATATC CAGGCTTCGCATCTGTTGAAATATGATTCTATGCTGGGAACTTTTAAAGCAGATGTGAAAATACTAAATGAGAACACCAT TACAGTTGATGGTAAGCCCATCAAGGTTGTCGCAAACAGGGACCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGATA TTGTTATTGAGGTAAGTCCCCACTACTTCATTTTATTCATATGCCATTCACCTAAGTCCTGAGAAGAGAATGAAAGTAAT ACAAGAAGCACTTGCTACCAATATTGAAGAAATATATGGATTTGGTAAGTCTTTTTTTTTTTTTGCATAACTTTATATGT CCTGATATCCAAGAACAACAACAAAAGCCTTATCCAACTAAGTGAGGCCTGCGTGTTTGATTCATATTATAATTGACAGC TAGTTATACGTTAGCTGCGGCAGGCCTAACACAACCTTCCTCGTATACCCTGATATCCAATCCAGTGAAAATTTCATGGT ATTGTTTATAACTTCAGAGCTTTTGAAAAGATTGAATGAATTTTTGTTCAGGGAACAGGAGTGTTTGTGGATGGCCCTGG TGCTGGAAAACACATCCAAGCAGGTGCCAAGAAAGTTATCATCACTGCTCCTGCAAAGGGTGCTGATATTCCAACTTATG TTGTTGGAGTAAATGAAGGGGACTACGGTCATAATGTCGCCGACATTATAAGGTCCGTGACCACTAAATCTGTGCTTTGT TTGGTTTTTTTCTTTTTCAAACAAGATATCAATGTTGAGATTGAAAAGAAAGGTTATTAACAGCTGAAAATGTCAATGCA GCATTGTGTTCTGTGTTGATTGTTCATTTTCCATCCCTGAAATATACATGTATTGAGTGATTGACTTTATTCTTTCTTTT GTTTCTTTAATTTACAGCAATGCTTCTTGCACCACAAACTGTCTTGCTCCCTTCGTGAAGATCCTGGATGAAGAGTTTGG TAAGCAAACACTCATCATATTCATAATGGCAGTTAATATTTAAGAGTCACATTCCAGACTTGAAGTCACTACCCTTTGGT CTGTATTTCCAGGAATTGTGAAGGGAACCATGACAACCACACATTCCTACACAGGAGATCAGGTACAAGATCATACATTG GAAACTTATGAATTAACCATAGTTTTACTGCTTATGTTATTTCAAATATGAAATATCTGAAAAAGTGTTTACCAAGTCAT CTATTTAATTTTCCAATTGCAAAATGGATAAAATAATGAGATATTAATGAGATTTTATGACATTATTGAGATACTGTTGC AGATATTATGAGATTTTGTGACATTACAGAGATATTGGTGCAGTTGTGATCTTATTGGATATTATATATATCAGATATAT TGTCATCCCATAATATCAAGATATCAGTATATGAAGTTATGGTATGAATTGTTCTTGTGCAGAGGCTTTTGGATGCTTCT CACAGGGACTTGAGAAGAGCTAGGGCTGCAGCTCTGAACATTGTCCCCACCAGCACCGGAGCGGCCAAGGCCGTGTCTCT GGTGCTGCCACAGCTCAAGGGAAAGCTCAATGGGATTGCCCTCCGCGTGCCGACACCCAATGTTTCGGTGGTTGACCTTG TGGTGAATGTTGAGAAGAAGGGTATCTCAGCTGAAGATGTCAATGCAGCATTCAGAAAGGCAGCTGAAGGGCCACTGAAA GGTGTGTTGGATGTGTGTGATGTTCCACTGGTGTCTGTGGACTTCAGGTGCACTGATGTTTCTTCTACTATTGACTCCTC ATTGACCATGGTCATGGGAGATGATATGGTCAAAGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGGTGAGGTTCCT GTCAATATACTATAAGCGTGTGTTTGGATTAGCATTGTCACAATTGATTTTGGATAAAATTGAATTTGGCAAAATTGATT ATAGTAAAAGTATGTTGAAAGTGAAGTTATTTATGTTTTAATTACATTTATGAAAAAAGTGATTTTGGTAGGATAATGTG AAATTCAGTTGTAAAAAATGAATTCAGTTAGTCATTGCACATAGCAGAGAAAATGAATTTTTATATCCTTGTAATAGATC ATGTCATTGAACATTGATAGTTACAATATTGGTAATTGCAGCCAAAGAGTGGTGGATTTGGCACATTTGGTTGCAAGCAA ATGGCCAGGCGCAGCTGCTGCACCAGGGAGTGGAGACCCATTGGAGGAGTTCTGCGAGACAAACCCAGCTGATGAGGAAT GCAAACTTTATGAATAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0567800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGGGAACTTTTAAAGCAGATGTGAAAATACTAAATGAGAACACCATTACAGTTGATGGTAAGCCCATCAAGGTTGT CGCAAACAGGGACCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGATATTGTTATTGAGGGAACAGGAGTGTTTGTGG ATGGCCCTGGTGCTGGAAAACACATCCAAGCAGGTGCCAAGAAAGTTATCATCACTGCTCCTGCAAAGGGAATTGTGAAG GGAACCATGACAACCACACATTCCTACACAGGAGATCAGAGGCTTTTGGATGCTTCTCACAGGGACTTGAGAAGAGCTAG GGCTGCAGCTCTGAACATTGTCCCCACCAGCACCGGAGCGGCCAAGGCCGTGTCTCTGGTGCTGCCACAGCTCAAGGGAA AGCTCAATGGGATTGCCCTCCGCGTGCCGACACCCAATGTTTCGGTGGTTGACCTTGTGGTGAATGTTGAGAAGAAGGGT ATCTCAGCTGAAGATGTCAATGCAGCATTCAGAAAGGCAGCTGAAGGGCCACTGAAAGGTGTGTTGGATGTGTGTGATGT TCCACTGGTGTCTGTGGACTTCAGGTGCACTGATGTTTCTTCTACTATTGACTCCTCATTGACCATGGTCATGGGAGATG ATATGGTCAAAGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGCCAAAGAGTGGTGGATTTGGCACATTTGGTTGCA AGCAAATGGCCAGGCGCAGCTGCTGCACCAGGGAGTGGAGACCCATTGGAGGAGTTCTGCGAGACAAACCCAGCTGATGA GGAATGCAAACTTTATGAATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0567800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLGTFKADVKILNENTITVDGKPIKVVANRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGIVK GTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKG ISAEDVNAAFRKAAEGPLKGVLDVCDVPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA SKWPGAAAAPGSGDPLEEFCETNPADEECKLYE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43148:SF5
1 77 77 2.9E-160 –
SMART
SM00846
1 100 100 2.0E-16
IPR020828
PANTHER
PTHR43148
1 77 77 2.9E-160 –
SUPERFAMILY
SSF51735
2 79 78 1.68E-23
IPR036291
Gene3D
G3DSA:3.40.50.720
2 76 75 3.6E-23 –
Pfam
PF00044
2 54 53 7.1E-12
IPR020828
SUPERFAMILY
SSF55347
75 223 149 3.74E-59 –
Pfam
PF02800
76 222 147 1.2E-60
IPR020829
PANTHER
PTHR43148
77 254 178 2.9E-160 –
Gene3D
G3DSA:3.30.360.10
77 224 148 9.4E-71 –
PANTHER
PTHR43148:SF5
77 254 178 2.9E-160 –
Gene3D
G3DSA:3.40.50.720
225 235 11 9.4E-71 –
Pfam
PF02672
253 273 21 1.1E-4
IPR003823

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016620
Molecular function Oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0567800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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