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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0568500 |
| Transcript ID | LotjaGi1g1v0568500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1; TAIR: AT1G76400.1 Ribophorin I; Swiss-Prot: sp|Q9SFX3|OST1A_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A; TrEMBL-Plants: tr|I1K7A1|I1K7A1_SOYBN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1; Found in the gene: LotjaGi1g1v0568500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110162913..110166980) extracted from Lotus japonicus Gifu genome v1.2.
TGAGATTCTTGGCCCTTCTCCTAGAAATCTCCAATGAGCTAGAAGTTTGGTTCTAGAATCTTCCATAGAAATATCCATTC CTTCATTGTGGAATATGATTCAGGTTGCGGACTCAAATCAAGTCGTCCTAGGTAGTCTCCATCCATCTAGATCAAGTGAT CATCATACCCTATGGACTATGGTGGCCAACTAACGATGACCAAACCACAAAGGCTCAAAGTCAGAATAAAATGTTGCCAT ACTATTAATTCTATTTTCTACGAAAAATACCTTGATAGTTTTAGTTAATTATACTTAAAAATGTAAAGTTGTAAACCTAT CGTGAATAGTTTTCAAATTTAATTTTTTTTTTCCAAAATACATATTTTTACGAAGCCACTATTATTTTACTACAAGGGTG AAAATGGTAAATGACCCGCTGGTAAACATTTGAGCAGGAACCCGCAGTGGCACTGACTAGCTTGGTCCGAGTGAAAGGGC GAATTGCTTTCAATTGCAGTGAATGAGCTGAAGCTGATGAAAGGAGGAAGAGGCATGTCGATGTTGAATCTGTTTCCGTT TCTTCTCACATTTACCATTCTATCCTCCCCTGCACTCTCCCTCTCCGATCTCATCCTCACCAAGGTTGACCGTCGTGTAA GTCTTCTCCACCTTTCTAGGGTTTCGATCTCACATCTCTCACTCTTTCCGTTTCGATTCCAGAACCTACAATACCAATTC CATTTCCTCCGATCCACACAATGTTCATATCTATATGTATGATTCTTCTGACAATCTTTTCCCCATCGCTTGCAGATTGA TCTAACATCACAAATCGCGCGCATCTCTACTTCATTGAAGGTACTCAAAATTTCATTCAATTCTCCTATGATTCAGATAT TTAGCTTGAATTTTCTTGATGTCATGCTTTGTATCCAATTTTTCTTTTGCAGGTGGAGAATGCAGGATCTGATCTGGTAT CAGAAATCTTGTTGTCCTTTCCTGAAAATCAAGCAAATCACTTGGCGCATTTGACTGCTAAACTTAGTGAAGGGAAGGGA AAAGGGAAAACATCTGGTGTTGGTTTACCTGTTGAAGTTGTGCATCCTGAGGGTGTGCCTTCTTCATTGACAATTTATTC TGTAACTTTGCCTAAGGGCATTGGGAAAGGCGATAGTTTGACGTTGGATGTATTGGCGGTTTTTACGCACACGTTGGAAC CGTTTCCGGAAAAAATTACTCAAGCTGATATCCAGCTTCTATTGTTTCAAGAGAGTGCACACTATCTTTCTCCTTATGCA GTCAAGTTCCAATCACTCACTGTTAAGTTGCCTGATGCGAGAATTGAGTCGTATACGAAACTGGATAGCGCGAAGCTTCA GGGATCTGAATTGAAATATGGTCCTTATGAGAATCTTCCTCCGTTCTCGTACTTGCCGATAGTCGTTCACTTTGAGAATA ATCGACCATTTGCTGTCGCAAAAGAGTTAGTGCGGGAGATTGAGATTTCACACTGGGGCAATGTGCAGGTCACTGAGCAT TACAATCTCGTTCACGGTGGTGCTCAGATCAAAGGAGAATTTTCCAGGTTAACTGTGTTTCTGTGATTCTGAATGATTTG AATTTTGTTATGTTAACTTGACATGAAAATAACAGTTCATTTCCTGCTGCAGACTTGATTATCAGTCCAGGCCACATGTG AGAGGTGCATCTTCCTTTAGGCGTCTTCTCGCCAAGCTTCCACCTAGAGCTCATTCAGTGTACTACAGGGATGAAATTGG CAACATTTCCACTTCTAGCTTATGGGGTGACTCAAAAAAGGTGAATATTGTCTCATTTGATAACCTTTTACTTTGGAATA CTTTTGGTAACATTTGCTAAAATGTTATCTTTGAAAATTACAGACGGAACTGGAGATCGAACCTAGGTACCCATTGTTTG GTGGCTGGAATAGTGCCTTTACCATTGGATATGGCTTACCACTTAAGGACTTCTTATTTGGATTGGATGGAAAGCGCTTC CTTAATATTACTTTCAGTACCCCTATCAATGATTTGGTGATTGACACTCTCTTTGTAAAGGTGAGAGATTATTTTATCTT GATAATTCGCACTTCGCTTCTTTTTACTTTTTGTTTTTCCATTATTGTTTGTTGCAAACTTGGATGTAATCTTAGAGTAG AGAATTTATCAATGTGCCTTGTACAACGTCATATTTAACTTAAACTTTTCAGCGGAAGAAATATATTAGGGCAGTGCATT TCTTTATATATAGATGAACTTTTCATTCGTCCTTGATTAAATTATGAGAATATAAATATGAATGTTCAATTAATTAATTG GCATTGGATTGTAACAGGTAAACACTTTTTTGCATGTGAATGGTATCTGTTAATAGAAGGAAATATATTTTACAGGAACC AATTTGAAGTTTTCCTTTCTCTCCTTTTTAGCTGTTATTTGCGTTATATATTAGTTCAAATATGAATTCCAATTGCATCT GGCTGGTGTTTGCAAATTTCAGGTTGTTTTGCCAGAGGGTTCTAAAGATATCTCAGTATCTGTTCCATATCCTGTGAAGC AAAGCCAGGAGGTATTGTTACATTGATATCTTCTTCCCAACCGTGTCTGACAAACTTTCTGTTCCCTATTATAGGTTTTA TAGCCCTTCTGTCTGTAATTGTTGCAGACAAAGTTTTCCCACTTGGATATTGCTGGTAGACCTGTCGTTGTGCTCGAGAA GAACAATGTTGTGCCTGAGCATAATGTGCATTTTCAGGTATTACTATTGCATCTTTTCAGGAAGCCAAAAGTGCTAAATT GGAGCAAGCCTGCCACCAATATAGTAGAATGCATTATTAAATGGGTGCTTTTCTTGATATTTTTTTACAGAAAAAAATGA GTATCCTGAATTTCATGGACTGAGTCTTATTGAATGGGTGCTTTTTCAGTCACTTTTATATGGTTTCCATAGTTTCAAGT GTACCCATCAGAAAACAAAACATGGATTTGTAGATTGCTAATTATGAGAACCTGGGAAAAGAGAAATTATGATTTGATTA CTTAGTGTACAATGTGTGTTTTTTTTTCCTTTAGATACATAGTATTGCTTACTGATTACACAAAGCTTGTATTGCAGGTC TATTACAAGTTTAACAGTCTTTCTATGCTCAGGGAGCCTTTGATGTTGATTTCTGGTTTTTTCTTTCTGTTTGTTGCCTG CATTGCCTACGTACATGCAGATTTCTCAATCTCCAAGTCTTCTGCATCTTATTTGGCAAAGCTCCAGTGGGAAGAGGTAA TCAACTTGTTGTATCATTTACAAAATCTAGTATTTGCAACTGAATAAAGCAACTGTGTCGTAATTGTTCACTTGCACTTC ACCTTTCAGGTACAAGCAACTGTTCGGCAGATTCATAATATCATTAGCCGTTGCTTAATCACACATGACAAGCTGGAAGC TTCTTTGCGTGATCTTTCTAGGACAGGTGATGTTCAAGCCTGCAAAGCAACTCGGAAATCTGTTGATAGCTCATTGAAAG AGCTCTCCAAAGAGTTGAAGTCACTGGTGGCATTCTTGCAGTCTTCTCCACAAGCCACTCCAGTATTATCCAAGGTCATT TTAGACATGCCTTCCTTTCATGAAGATAAAAAGAAATAAATGTTTATTCTACGTCAAATTCCCTTTCTATATTCTAGTAC CATAATTATGTTTTCATTTTCAGGTGGAGGAAATTATTACGAAGGAGAGAGATTTGCAGGAAAAACTTATGGCAAAACAC TCTACAGTTGTGGACTGTTATGAGAAGAAGTTGGGAGGAAGGGAAATTGAGAATCGGATTGCTTCACATCAGCAGAAAAT CACAGCTTTGAGGCAGGAAATTGATGATCTTATGGACGTGATTGATGAGATATGATAGGTGATATGCTCGACATGATAAT GTACTCTGGTTTTGACCTTGTTTTACTTTATTTAGATCAGAATTTTGTTAGATGATTGCAAAGGGATTAGTGATACTTCT GTGGATCAGAATTTTGTTGCGGTCTATTATTATCTACAAGTAATAATATTATGATATCTAGAGCTTAA
CDS sequence (LotjaGi1g1v0568500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGAGGAAGAGGCATGTCGATGTTGAATCTGTTTCCGTTTCTTCTCACATTTACCATTCTATCCTCCCCTGCACT CTCCCTCTCCGATCTCATCCTCACCAAGGTTGACCGTCGTATTGATCTAACATCACAAATCGCGCGCATCTCTACTTCAT TGAAGGTGGAGAATGCAGGATCTGATCTGGTATCAGAAATCTTGTTGTCCTTTCCTGAAAATCAAGCAAATCACTTGGCG CATTTGACTGCTAAACTTAGTGAAGGGAAGGGAAAAGGGAAAACATCTGGTGTTGGTTTACCTGTTGAAGTTGTGCATCC TGAGGGTGTGCCTTCTTCATTGACAATTTATTCTGTAACTTTGCCTAAGGGCATTGGGAAAGGCGATAGTTTGACGTTGG ATGTATTGGCGGTTTTTACGCACACGTTGGAACCGTTTCCGGAAAAAATTACTCAAGCTGATATCCAGCTTCTATTGTTT CAAGAGAGTGCACACTATCTTTCTCCTTATGCAGTCAAGTTCCAATCACTCACTGTTAAGTTGCCTGATGCGAGAATTGA GTCGTATACGAAACTGGATAGCGCGAAGCTTCAGGGATCTGAATTGAAATATGGTCCTTATGAGAATCTTCCTCCGTTCT CGTACTTGCCGATAGTCGTTCACTTTGAGAATAATCGACCATTTGCTGTCGCAAAAGAGTTAGTGCGGGAGATTGAGATT TCACACTGGGGCAATGTGCAGGTCACTGAGCATTACAATCTCGTTCACGGTGGTGCTCAGATCAAAGGAGAATTTTCCAG ACTTGATTATCAGTCCAGGCCACATGTGAGAGGTGCATCTTCCTTTAGGCGTCTTCTCGCCAAGCTTCCACCTAGAGCTC ATTCAGTGTACTACAGGGATGAAATTGGCAACATTTCCACTTCTAGCTTATGGGGTGACTCAAAAAAGACGGAACTGGAG ATCGAACCTAGGTACCCATTGTTTGGTGGCTGGAATAGTGCCTTTACCATTGGATATGGCTTACCACTTAAGGACTTCTT ATTTGGATTGGATGGAAAGCGCTTCCTTAATATTACTTTCAGTACCCCTATCAATGATTTGGTGATTGACACTCTCTTTG TAAAGGTTGTTTTGCCAGAGGGTTCTAAAGATATCTCAGTATCTGTTCCATATCCTGTGAAGCAAAGCCAGGAGACAAAG TTTTCCCACTTGGATATTGCTGGTAGACCTGTCGTTGTGCTCGAGAAGAACAATGTTGTGCCTGAGCATAATGTGCATTT TCAGGTCTATTACAAGTTTAACAGTCTTTCTATGCTCAGGGAGCCTTTGATGTTGATTTCTGGTTTTTTCTTTCTGTTTG TTGCCTGCATTGCCTACGTACATGCAGATTTCTCAATCTCCAAGTCTTCTGCATCTTATTTGGCAAAGCTCCAGTGGGAA GAGGTACAAGCAACTGTTCGGCAGATTCATAATATCATTAGCCGTTGCTTAATCACACATGACAAGCTGGAAGCTTCTTT GCGTGATCTTTCTAGGACAGGTGATGTTCAAGCCTGCAAAGCAACTCGGAAATCTGTTGATAGCTCATTGAAAGAGCTCT CCAAAGAGTTGAAGTCACTGGTGGCATTCTTGCAGTCTTCTCCACAAGCCACTCCAGTATTATCCAAGGTGGAGGAAATT ATTACGAAGGAGAGAGATTTGCAGGAAAAACTTATGGCAAAACACTCTACAGTTGTGGACTGTTATGAGAAGAAGTTGGG AGGAAGGGAAATTGAGAATCGGATTGCTTCACATCAGCAGAAAATCACAGCTTTGAGGCAGGAAATTGATGATCTTATGG ACGTGATTGATGAGATATGA
Protein sequence (LotjaGi1g1v0568500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGGRGMSMLNLFPFLLTFTILSSPALSLSDLILTKVDRRIDLTSQIARISTSLKVENAGSDLVSEILLSFPENQANHLA HLTAKLSEGKGKGKTSGVGLPVEVVHPEGVPSSLTIYSVTLPKGIGKGDSLTLDVLAVFTHTLEPFPEKITQADIQLLLF QESAHYLSPYAVKFQSLTVKLPDARIESYTKLDSAKLQGSELKYGPYENLPPFSYLPIVVHFENNRPFAVAKELVREIEI SHWGNVQVTEHYNLVHGGAQIKGEFSRLDYQSRPHVRGASSFRRLLAKLPPRAHSVYYRDEIGNISTSSLWGDSKKTELE IEPRYPLFGGWNSAFTIGYGLPLKDFLFGLDGKRFLNITFSTPINDLVIDTLFVKVVLPEGSKDISVSVPYPVKQSQETK FSHLDIAGRPVVVLEKNNVVPEHNVHFQVYYKFNSLSMLREPLMLISGFFFLFVACIAYVHADFSISKSSASYLAKLQWE EVQATVRQIHNIISRCLITHDKLEASLRDLSRTGDVQACKATRKSVDSSLKELSKELKSLVAFLQSSPQATPVLSKVEEI ITKERDLQEKLMAKHSTVVDCYEKKLGGREIENRIASHQQKITALRQEIDDLMDVIDEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 12 | 22 | 11 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| PANTHER | 14 | 589 | 576 | 2.4E-246 | – | |
| PANTHER | 14 | 589 | 576 | 2.4E-246 | ||
| Phobius | 23 | 30 | 8 | - | – | |
| Phobius | 31 | 442 | 412 | - | – | |
| Pfam | 34 | 459 | 426 | 3.0E-147 | ||
| TMHMM | 443 | 462 | 20 | - | – | |
| Phobius | 443 | 462 | 20 | - | – | |
| Phobius | 463 | 619 | 157 | - | – | |
| Coils | 588 | 615 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Biological process | Protein glycosylation | A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0568500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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