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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0568500 |
Transcript ID | LotjaGi1g1v0568500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1; TAIR: AT1G76400.1 Ribophorin I; Swiss-Prot: sp|Q9SFX3|OST1A_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A; TrEMBL-Plants: tr|I1K7A1|I1K7A1_SOYBN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1; Found in the gene: LotjaGi1g1v0568500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110162966..110167312) extracted from Lotus japonicus Gifu genome v1.2.
TAGAATCTTCCATAGAAATATCCATTCCTTCATTGTGGAATATGATTCAGGTTGCGGACTCAAATCAAGTCGTCCTAGGT AGTCTCCATCCATCTAGATCAAGTGATCATCATACCCTATGGACTATGGTGGCCAACTAACGATGACCAAACCACAAAGG CTCAAAGTCAGAATAAAATGTTGCCATACTATTAATTCTATTTTCTACGAAAAATACCTTGATAGTTTTAGTTAATTATA CTTAAAAATGTAAAGTTGTAAACCTATCGTGAATAGTTTTCAAATTTAATTTTTTTTTTCCAAAATACATATTTTTACGA AGCCACTATTATTTTACTACAAGGGTGAAAATGGTAAATGACCCGCTGGTAAACATTTGAGCAGGAACCCGCAGTGGCAC TGACTAGCTTGGTCCGAGTGAAAGGGCGAATTGCTTTCAATTGCAGTGAATGAGCTGAAGCTGATGAAAGGAGGAAGAGG CATGTCGATGTTGAATCTGTTTCCGTTTCTTCTCACATTTACCATTCTATCCTCCCCTGCACTCTCCCTCTCCGATCTCA TCCTCACCAAGGTTGACCGTCGTGTAAGTCTTCTCCACCTTTCTAGGGTTTCGATCTCACATCTCTCACTCTTTCCGTTT CGATTCCAGAACCTACAATACCAATTCCATTTCCTCCGATCCACACAATGTTCATATCTATATGTATGATTCTTCTGACA ATCTTTTCCCCATCGCTTGCAGATTGATCTAACATCACAAATCGCGCGCATCTCTACTTCATTGAAGGTACTCAAAATTT CATTCAATTCTCCTATGATTCAGATATTTAGCTTGAATTTTCTTGATGTCATGCTTTGTATCCAATTTTTCTTTTGCAGG TGGAGAATGCAGGATCTGATCTGGTATCAGAAATCTTGTTGTCCTTTCCTGAAAATCAAGCAAATCACTTGGCGCATTTG ACTGCTAAACTTAGTGAAGGGAAGGGAAAAGGGAAAACATCTGGTGTTGGTTTACCTGTTGAAGTTGTGCATCCTGAGGG TGTGCCTTCTTCATTGACAATTTATTCTGTAACTTTGCCTAAGGGCATTGGGAAAGGCGATAGTTTGACGTTGGATGTAT TGGCGGTTTTTACGCACACGTTGGAACCGTTTCCGGAAAAAATTACTCAAGCTGATATCCAGCTTCTATTGTTTCAAGAG AGTGCACACTATCTTTCTCCTTATGCAGTCAAGTTCCAATCACTCACTGTTAAGTTGCCTGATGCGAGAATTGAGTCGTA TACGAAACTGGATAGCGCGAAGCTTCAGGGATCTGAATTGAAATATGGTCCTTATGAGAATCTTCCTCCGTTCTCGTACT TGCCGATAGTCGTTCACTTTGAGAATAATCGACCATTTGCTGTCGCAAAAGAGTTAGTGCGGGAGATTGAGATTTCACAC TGGGGCAATGTGCAGGTCACTGAGCATTACAATCTCGTTCACGGTGGTGCTCAGATCAAAGGAGAATTTTCCAGGTTAAC TGTGTTTCTGTGATTCTGAATGATTTGAATTTTGTTATGTTAACTTGACATGAAAATAACAGTTCATTTCCTGCTGCAGA CTTGATTATCAGTCCAGGCCACATGTGAGAGGTGCATCTTCCTTTAGGCGTCTTCTCGCCAAGCTTCCACCTAGAGCTCA TTCAGTGTACTACAGGGATGAAATTGGCAACATTTCCACTTCTAGCTTATGGGGTGACTCAAAAAAGGTGAATATTGTCT CATTTGATAACCTTTTACTTTGGAATACTTTTGGTAACATTTGCTAAAATGTTATCTTTGAAAATTACAGACGGAACTGG AGATCGAACCTAGGTACCCATTGTTTGGTGGCTGGAATAGTGCCTTTACCATTGGATATGGCTTACCACTTAAGGACTTC TTATTTGGATTGGATGGAAAGCGCTTCCTTAATATTACTTTCAGTACCCCTATCAATGATTTGGTGATTGACACTCTCTT TGTAAAGGTGAGAGATTATTTTATCTTGATAATTCGCACTTCGCTTCTTTTTACTTTTTGTTTTTCCATTATTGTTTGTT GCAAACTTGGATGTAATCTTAGAGTAGAGAATTTATCAATGTGCCTTGTACAACGTCATATTTAACTTAAACTTTTCAGC GGAAGAAATATATTAGGGCAGTGCATTTCTTTATATATAGATGAACTTTTCATTCGTCCTTGATTAAATTATGAGAATAT AAATATGAATGTTCAATTAATTAATTGGCATTGGATTGTAACAGGTAAACACTTTTTTGCATGTGAATGGTATCTGTTAA TAGAAGGAAATATATTTTACAGGAACCAATTTGAAGTTTTCCTTTCTCTCCTTTTTAGCTGTTATTTGCGTTATATATTA GTTCAAATATGAATTCCAATTGCATCTGGCTGGTGTTTGCAAATTTCAGGTTGTTTTGCCAGAGGGTTCTAAAGATATCT CAGTATCTGTTCCATATCCTGTGAAGCAAAGCCAGGAGGTATTGTTACATTGATATCTTCTTCCCAACCGTGTCTGACAA ACTTTCTGTTCCCTATTATAGGTTTTATAGCCCTTCTGTCTGTAATTGTTGCAGACAAAGTTTTCCCACTTGGATATTGC TGGTAGACCTGTCGTTGTGCTCGAGAAGAACAATGTTGTGCCTGAGCATAATGTGCATTTTCAGGTATTACTATTGCATC TTTTCAGGAAGCCAAAAGTGCTAAATTGGAGCAAGCCTGCCACCAATATAGTAGAATGCATTATTAAATGGGTGCTTTTC TTGATATTTTTTTACAGAAAAAAATGAGTATCCTGAATTTCATGGACTGAGTCTTATTGAATGGGTGCTTTTTCAGTCAC TTTTATATGGTTTCCATAGTTTCAAGTGTACCCATCAGAAAACAAAACATGGATTTGTAGATTGCTAATTATGAGAACCT GGGAAAAGAGAAATTATGATTTGATTACTTAGTGTACAATGTGTGTTTTTTTTTCCTTTAGATACATAGTATTGCTTACT GATTACACAAAGCTTGTATTGCAGGTCTATTACAAGTTTAACAGTCTTTCTATGCTCAGGGAGCCTTTGATGTTGATTTC TGGTTTTTTCTTTCTGTTTGTTGCCTGCATTGCCTACGTACATGCAGATTTCTCAATCTCCAAGTCTTCTGCATCTTATT TGGCAAAGCTCCAGTGGGAAGAGGTAATCAACTTGTTGTATCATTTACAAAATCTAGTATTTGCAACTGAATAAAGCAAC TGTGTCGTAATTGTTCACTTGCACTTCACCTTTCAGGTACAAGCAACTGTTCGGCAGATTCATAATATCATTAGCCGTTG CTTAATCACACATGACAAGCTGGAAGCTTCTTTGCGTGATCTTTCTAGGACAGGTGATGTTCAAGCCTGCAAAGCAACTC GGAAATCTGTTGATAGCTCATTGAAAGAGCTCTCCAAAGAGTTGAAGTCACTGGTGGCATTCTTGCAGTCTTCTCCACAA GCCACTCCAGTATTATCCAAGGTCATTTTAGACATGCCTTCCTTTCATGAAGATAAAAAGAAATAAATGTTTATTCTACG TCAAATTCCCTTTCTATATTCTAGTACCATAATTATGTTTTCATTTTCAGGTGGAGGAAATTATTACGAAGGAGAGAGAT TTGCAGGAAAAACTTATGGCAAAACACTCTACAGTTGTGGACTGTTATGAGAAGAAGTTGGGAGGAAGGGAAATTGAGAA TCGGATTGCTTCACATCAGCAGAAAATCACAGCTTTGAGGCAGGAAATTGATGATCTTATGGACGTGATTGATGAGATAT GATAGGTGATATGCTCGACATGATAATGTACTCTGGTTTTGACCTTGTTTTACTTTATTTAGATCAGAATTTTGTTAGAT GATTGCAAAGGGATTAGTGATACTTCTGTGGATCAGAATTTTGTTGCGGTCTATTATTATCTACAAGTAATAATATTATG ATATCTAGAGCTTAAGTAATAAGTATGCTAGAATAAGAATAACGATCGCCTAGAATAAGTATGCTAGAATAAGAATCACG ATCACTTAAGTAATAACTAGAGCTTATGATCACCAATTTTATATCCATGTTTATGAAAAAATAGATTGCGAACAATCCGA AATCATCAGTGATAGCCGTGTACTGCAGCACTTTGCTTCGAGTTGTAACTCTTGATACGTTTGACAATGGCGAGTCATTG ATTCACCGCCATCTCTCACCATCACCTCTGTCCTTCTCTGTCTTCGTTCTAAATGGAAGCCACCTAACCATATTTCCTCC TTTGTCTTTCCACCATGTCATTTCCCC
CDS sequence (LotjaGi1g1v0568500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGAGGAAGAGGCATGTCGATGTTGAATCTGTTTCCGTTTCTTCTCACATTTACCATTCTATCCTCCCCTGCACT CTCCCTCTCCGATCTCATCCTCACCAAGGTTGACCGTCGTATTGATCTAACATCACAAATCGCGCGCATCTCTACTTCAT TGAAGGTGGAGAATGCAGGATCTGATCTGGTATCAGAAATCTTGTTGTCCTTTCCTGAAAATCAAGCAAATCACTTGGCG CATTTGACTGCTAAACTTAGTGAAGGGAAGGGAAAAGGGAAAACATCTGGTGTTGGTTTACCTGTTGAAGTTGTGCATCC TGAGGGTGTGCCTTCTTCATTGACAATTTATTCTGTAACTTTGCCTAAGGGCATTGGGAAAGGCGATAGTTTGACGTTGG ATGTATTGGCGGTTTTTACGCACACGTTGGAACCGTTTCCGGAAAAAATTACTCAAGCTGATATCCAGCTTCTATTGTTT CAAGAGAGTGCACACTATCTTTCTCCTTATGCAGTCAAGTTCCAATCACTCACTGTTAAGTTGCCTGATGCGAGAATTGA GTCGTATACGAAACTGGATAGCGCGAAGCTTCAGGGATCTGAATTGAAATATGGTCCTTATGAGAATCTTCCTCCGTTCT CGTACTTGCCGATAGTCGTTCACTTTGAGAATAATCGACCATTTGCTGTCGCAAAAGAGTTAGTGCGGGAGATTGAGATT TCACACTGGGGCAATGTGCAGGTCACTGAGCATTACAATCTCGTTCACGGTGGTGCTCAGATCAAAGGAGAATTTTCCAG ACTTGATTATCAGTCCAGGCCACATGTGAGAGGTGCATCTTCCTTTAGGCGTCTTCTCGCCAAGCTTCCACCTAGAGCTC ATTCAGTGTACTACAGGGATGAAATTGGCAACATTTCCACTTCTAGCTTATGGGGTGACTCAAAAAAGACGGAACTGGAG ATCGAACCTAGGTACCCATTGTTTGGTGGCTGGAATAGTGCCTTTACCATTGGATATGGCTTACCACTTAAGGACTTCTT ATTTGGATTGGATGGAAAGCGCTTCCTTAATATTACTTTCAGTACCCCTATCAATGATTTGGTGATTGACACTCTCTTTG TAAAGGTTGTTTTGCCAGAGGGTTCTAAAGATATCTCAGTATCTGTTCCATATCCTGTGAAGCAAAGCCAGGAGACAAAG TTTTCCCACTTGGATATTGCTGGTAGACCTGTCGTTGTGCTCGAGAAGAACAATGTTGTGCCTGAGCATAATGTGCATTT TCAGGTCTATTACAAGTTTAACAGTCTTTCTATGCTCAGGGAGCCTTTGATGTTGATTTCTGGTTTTTTCTTTCTGTTTG TTGCCTGCATTGCCTACGTACATGCAGATTTCTCAATCTCCAAGTCTTCTGCATCTTATTTGGCAAAGCTCCAGTGGGAA GAGGTACAAGCAACTGTTCGGCAGATTCATAATATCATTAGCCGTTGCTTAATCACACATGACAAGCTGGAAGCTTCTTT GCGTGATCTTTCTAGGACAGGTGATGTTCAAGCCTGCAAAGCAACTCGGAAATCTGTTGATAGCTCATTGAAAGAGCTCT CCAAAGAGTTGAAGTCACTGGTGGCATTCTTGCAGTCTTCTCCACAAGCCACTCCAGTATTATCCAAGGTGGAGGAAATT ATTACGAAGGAGAGAGATTTGCAGGAAAAACTTATGGCAAAACACTCTACAGTTGTGGACTGTTATGAGAAGAAGTTGGG AGGAAGGGAAATTGAGAATCGGATTGCTTCACATCAGCAGAAAATCACAGCTTTGAGGCAGGAAATTGATGATCTTATGG ACGTGATTGATGAGATATGA
Protein sequence (LotjaGi1g1v0568500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGGRGMSMLNLFPFLLTFTILSSPALSLSDLILTKVDRRIDLTSQIARISTSLKVENAGSDLVSEILLSFPENQANHLA HLTAKLSEGKGKGKTSGVGLPVEVVHPEGVPSSLTIYSVTLPKGIGKGDSLTLDVLAVFTHTLEPFPEKITQADIQLLLF QESAHYLSPYAVKFQSLTVKLPDARIESYTKLDSAKLQGSELKYGPYENLPPFSYLPIVVHFENNRPFAVAKELVREIEI SHWGNVQVTEHYNLVHGGAQIKGEFSRLDYQSRPHVRGASSFRRLLAKLPPRAHSVYYRDEIGNISTSSLWGDSKKTELE IEPRYPLFGGWNSAFTIGYGLPLKDFLFGLDGKRFLNITFSTPINDLVIDTLFVKVVLPEGSKDISVSVPYPVKQSQETK FSHLDIAGRPVVVLEKNNVVPEHNVHFQVYYKFNSLSMLREPLMLISGFFFLFVACIAYVHADFSISKSSASYLAKLQWE EVQATVRQIHNIISRCLITHDKLEASLRDLSRTGDVQACKATRKSVDSSLKELSKELKSLVAFLQSSPQATPVLSKVEEI ITKERDLQEKLMAKHSTVVDCYEKKLGGREIENRIASHQQKITALRQEIDDLMDVIDEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 30 | 30 | - | – | |
Phobius | 1 | 11 | 11 | - | – | |
SignalP_EUK | 1 | 28 | 28 | - | – | |
Phobius | 12 | 22 | 11 | - | – | |
TMHMM | 12 | 34 | 23 | - | – | |
PANTHER | 14 | 589 | 576 | 2.4E-246 | – | |
PANTHER | 14 | 589 | 576 | 2.4E-246 | ||
Phobius | 23 | 30 | 8 | - | – | |
Phobius | 31 | 442 | 412 | - | – | |
Pfam | 34 | 459 | 426 | 3.0E-147 | ||
TMHMM | 443 | 462 | 20 | - | – | |
Phobius | 443 | 462 | 20 | - | – | |
Phobius | 463 | 619 | 157 | - | – | |
Coils | 588 | 615 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
Biological process | Protein glycosylation | A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. | ||
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0568500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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