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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0570400 |
| Transcript ID | LotjaGi1g1v0570400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BURP domain protein RD22; TAIR: AT1G49320.1 unknown seed protein like 1; Swiss-Prot: sp|O65009|BNM2A_BRANA BURP domain-containing protein BNM2A; TrEMBL-Plants: tr|C6TE67|C6TE67_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0570400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110398919..110401863) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGAAATAAAAAGTCTGTGAAAATTGGATGGAAGATAAGTTGGATTGTGAATAAATTAAAATCCTCCCATTAAATAAG AGTAATGTTTCATCCATACCTCTCTTTTGAGGTGGAGAGGTGGAATGATGAGAGAGATAGGAAGAAAAGAAAAAGTAAGA GAGAGAAAATATGAGATGTGATAGATGATAAGATGAGAGAGATAGAAATAAAAAGAGGTGGAAATTGAGTGTTTAAAAAA TGAGGTGTGTATATATCATTACTCATTAAATAATGACAGCAAGAGATTCTCACTCCTGAGTTTCCTATTTTCCTACAAAA CAAGACCTGCGAACCCTTTTATTCAGTTCCTACTCCTTTTGGTTATTCTCTGAAGTTTCAACTTTCAAGAGAAACAGAGA AATGAGACTTGGAATTGCTTCATGGAGTTTCATCCTATGCACCCTACTTGTCTTTTTGGTAAGATCTTGCTCTGCTATTC AATTATATAAAATCATATATCTTTGTTGAGCTAGTGAATTTTTATACAGTTTCTAATGTAACATTCCAGCAGAAGCAGAT CTTTCAACTTAGATCTTCCTTAACTGGTTTTGAAAAAAAATAAAAAATTTATAGTCATCTCAAAGCAAAACTTTGTTTGA ATTGGTTTTGGTTCATTTGTTTTAATGAAACTGTTGATATGAGTGCATGTTTGGAAGTGTTTCCACAATCAACTCTGAAG CCTAAATCAATTATGAAAAGAAGCTTTTGTGAGTAATTTTAGGTAACAGAATTGATTCCGAGAAAAGTGAAGTTGATAGT AACATGCTATTAGAATTGTTGCTTTTATGAGACTTTTGTCCAAGATCCTTCCAATTAACTTTTCAACTTTGTTGATGTTA CAGATTGTACAAGACAGTGGTGCTAGAAGGATAGGTATCACAACTGGGAGAGAGATTCAGCTGAAGGAAATATCCTATGA TTTGCAACAGCTCCCAACAGAGGGTCCTGGACTTTCTGATATTCTGCAGGTTGAAGGAAATGGTGTAGAATTGAATAAGA AGCCTGTTCAAAAAGATGATGATGATGGTGCTGATGATGAAGATGAACATAAAAAGATGATTGGAAATGAAGTGCATACT CATGAGTCATCTCATATGGATCACAACCACATGGATCCAGAATTGCATGTGTTTTTCATCCCAAAAGATTTAAAGGTTGG GAAAAAAATGCCAATTTATTTTTCCATGAAGGATTCTTCAACCTCTCCAAAATTTCTACCCAGAGAAGAAGCTAATCAGA TTCCTTTCTCATCAAAACAACTACCCTCCCTCCTCAATTTCTTCTCTATCCCAAAAAACTCTCCTCAAGCCAAGGCCATG AAATACACACTTGAACAATGTGAGTTTGAGCCCATGGAAGGAGAAACCAAGTTTTGTGCTACTTCCCTAGAGTCCTTGCT TGATTCGGCACGCCACCTGTTTGGGTTAAGTCCCCAATTCAAAGTTTTGACCACTACCCATCTCACAAAATCCCATGTCC TTTTACAGAACTACACAATCTTAGAAGTGAAGGAGAATAGAGTTCCAAACGTTATAGGATGTCACCCAATGCCTTATCCT TTTGCAGTCTTTTACTGCCATAGCCAACAGAGTGATACTAGTCTCTATGAGGTGCTGGTGGAAGGTGAGAATGGAGGAAG AGTTCAAGCTGCAGCTATCTGTCACATGAACACCTCTAAGTGGGACCCGGATCACGCCGCGTTTCGTGTGCTCAAGGTTG AACCTGGAACCTCCCCTGTGTGCCATTTCTTCCCTCATGATAATCTTGTCTTGATGCCATTGCCATAAGCCCATAACAAG TTCCATGTTCTTGATCAAGTGTTTTCTGTTTCTGTATATGAAGCTATGCTAGATATGATATTAAATCTAGACCTTGTGGA CTAGGAACTGCCTCTTGATGCAAAAAAATGTATCTATGTTGATCAAGAACCTAATAAGATGGTATTTTGTTGTGCTTGAG AGCCTTAGAGTAATCATTGTCTTGTGCAAAAATTAGAAGGTAGAGTGTAAGATTTGTATTAATTATGAGGCAGAGAATAC ATCCATTCCAAAAAAAAATGTTGCCTTTGGGTATTCATTAGCACAATTCGAGACAAAAGGTGAATGATGCTATTCTTATT AATTGAGATGAAGGTTTATTTACGTTGCACTTAATCGATATCCAAACAAACACCATCTCACTGGGCTGCCTAATACCAAC ATTCCTACTCAAGTCATTTCTTACAATGTGAGCTATTGAGGTGAGCTCAAAGGTGATAGAAACTCATAGTTTGTTATAAA ATCCCAGCTACTTGAAATTGACATCAAGTGCTAGAGACGTGGATGCTTCAACTTTCAAGAAATTAGAGCTTTGTGTTTTT GGTAGAACTTGGGAATATGTTAGTACAAAAAGGGCTTAAGATTGTTTGTGGCAAAAGTTTTTGGCCTACACGTGGTATTC TAAATAATTGCCACTTCTGCTTGAAGTTTTTCTGGGCACTACTGAATGAATCTGTTGGTTTCAGTGTACAAAGTACAAAC ACTAATTTCTTGGCTTCTAGTACCTTTGCTGTGATTGCAACAGAATCTGGATAAGCATCAGTTATGTTATCAACTCAGTT TTCCATTATTTATGTTTATGATTAAAAGAAAAGATGATATTCTTGAAATTGCATATCAGATACATTGTAAGACATTGTTG GTTTGCACCGCTGAGGCTGAAGCTATACAAAAACATATTGGCTTAATTGCACTTTACGTCCTGATGTTAGGCCTATGTGC AATTTGAGTCCCCTTTGTTTAAAATGAGCAATTTTGGTCCCCTAAAAATCAATTTGTGCAAATTGAGTCTGGCCGTCCAA TTGCTAACAGAAATTGTTAAGCTGCATATTCATTTAAATTTTATTAATATTATTGCCATATAAGC
CDS sequence (LotjaGi1g1v0570400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACTTGGAATTGCTTCATGGAGTTTCATCCTATGCACCCTACTTGTCTTTTTGATTGTACAAGACAGTGGTGCTAG AAGGATAGGTATCACAACTGGGAGAGAGATTCAGCTGAAGGAAATATCCTATGATTTGCAACAGCTCCCAACAGAGGGTC CTGGACTTTCTGATATTCTGCAGGTTGAAGGAAATGGTGTAGAATTGAATAAGAAGCCTGTTCAAAAAGATGATGATGAT GGTGCTGATGATGAAGATGAACATAAAAAGATGATTGGAAATGAAGTGCATACTCATGAGTCATCTCATATGGATCACAA CCACATGGATCCAGAATTGCATGTGTTTTTCATCCCAAAAGATTTAAAGGTTGGGAAAAAAATGCCAATTTATTTTTCCA TGAAGGATTCTTCAACCTCTCCAAAATTTCTACCCAGAGAAGAAGCTAATCAGATTCCTTTCTCATCAAAACAACTACCC TCCCTCCTCAATTTCTTCTCTATCCCAAAAAACTCTCCTCAAGCCAAGGCCATGAAATACACACTTGAACAATGTGAGTT TGAGCCCATGGAAGGAGAAACCAAGTTTTGTGCTACTTCCCTAGAGTCCTTGCTTGATTCGGCACGCCACCTGTTTGGGT TAAGTCCCCAATTCAAAGTTTTGACCACTACCCATCTCACAAAATCCCATGTCCTTTTACAGAACTACACAATCTTAGAA GTGAAGGAGAATAGAGTTCCAAACGTTATAGGATGTCACCCAATGCCTTATCCTTTTGCAGTCTTTTACTGCCATAGCCA ACAGAGTGATACTAGTCTCTATGAGGTGCTGGTGGAAGGTGAGAATGGAGGAAGAGTTCAAGCTGCAGCTATCTGTCACA TGAACACCTCTAAGTGGGACCCGGATCACGCCGCGTTTCGTGTGCTCAAGGTTGAACCTGGAACCTCCCCTGTGTGCCAT TTCTTCCCTCATGATAATCTTGTCTTGATGCCATTGCCATAA
Protein sequence (LotjaGi1g1v0570400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLGIASWSFILCTLLVFLIVQDSGARRIGITTGREIQLKEISYDLQQLPTEGPGLSDILQVEGNGVELNKKPVQKDDDD GADDEDEHKKMIGNEVHTHESSHMDHNHMDPELHVFFIPKDLKVGKKMPIYFSMKDSSTSPKFLPREEANQIPFSSKQLP SLLNFFSIPKNSPQAKAMKYTLEQCEFEPMEGETKFCATSLESLLDSARHLFGLSPQFKVLTTTHLTKSHVLLQNYTILE VKENRVPNVIGCHPMPYPFAVFYCHSQQSDTSLYEVLVEGENGGRVQAAAICHMNTSKWDPDHAAFRVLKVEPGTSPVCH FFPHDNLVLMPLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| PANTHER | 4 | 330 | 327 | 8.6E-133 | – | |
| PANTHER | 4 | 330 | 327 | 8.6E-133 | – | |
| TMHMM | 5 | 22 | 18 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 333 | 307 | - | – | |
| MobiDBLite | 67 | 87 | 21 | - | – | |
| MobiDBLite | 70 | 87 | 18 | - | – | |
| SMART | 114 | 332 | 219 | 1.9E-77 | ||
| Pfam | 115 | 330 | 216 | 1.2E-75 | ||
| ProSiteProfiles | 116 | 332 | 217 | 77.311 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0570400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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